mRNA_P-wetherbeei_contig6806.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6806.1.1
Unique NamemRNA_P-wetherbeei_contig6806.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6806.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6806contigP-wetherbeei_contig6806:611..2784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2174
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1809
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.09018-UTR-P-wetherbeei_contig6806:610..8781683186939.09018-UTR-P-wetherbeei_contig6806:610..878Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6806 611..878 +
1683186939.1137486-UTR-P-wetherbeei_contig6806:2687..27841683186939.1137486-UTR-P-wetherbeei_contig6806:2687..2784Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6806 2688..2784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186939.1033547-CDS-P-wetherbeei_contig6806:878..26871683186939.1033547-CDS-P-wetherbeei_contig6806:878..2687Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6806 879..2687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6806.1.1prot_P-wetherbeei_contig6806.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6806 879..2687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6806.1.1

>prot_P-wetherbeei_contig6806.1.1 ID=prot_P-wetherbeei_contig6806.1.1|Name=mRNA_P-wetherbeei_contig6806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=603bp
MGRVMLAALLLMLPIVRVRGLVDLNEIPHWPKALATALKRLPAGAAKSEI
LEEVNLEDFEGFDAIFDKISASQKDDSKNTVYATSIVLAETFTVPDTGSL
IVRGVVVHGSAVCRDSFCAVVEAVDLTGFRVSGYGELRKVSALGTVPPTP
AGGYFVATTAPEDAWGGCYNPTLQNSFLVVDCDDPSGDIYSTLRVESRDE
LGERIVLSGFGRADMKLANGEYDEDATVGEIIASGFVGMSSGSGSGTQSI
DLPWWLEWAVDSSSLDLPSLGSLVAGSVPRIFDAMAEILRPPDFSAAMPA
SAATVDELLRILWSFAAARLLQPYGAEEEAAASTAAAAGSSSSSGSSGID
GATAATTNTVLDSSALMARATVGVPSEPTVTSACAIGTLLVITAYFVGRD
IASGSRWARYHISQRRGGAAAPADGDAPPADAAVAAAAPAAPPADVADAP
AAAGQPEKPNWSLFAVALVGLCLESYGFHLAWADAKDFNAYETTFGIVRV
VSADLVGGVAFLRIGQDMDPKVIETTLVRVETNDIDTRAFVVSAVFAALF
GLLGLVDETAAWKTAWRFNGPLGRVKQKAYFAAHGTVIIITRAVERARAP
WM*
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mRNA from alignment at P-wetherbeei_contig6806:611..2784+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6806.1.1 ID=mRNA_P-wetherbeei_contig6806.1.1|Name=mRNA_P-wetherbeei_contig6806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2174bp|location=Sequence derived from alignment at P-wetherbeei_contig6806:611..2784+ (Phaeothamnion wetherbeei SAG_119_79)
CTATAGACGGAGAAAAGGCGAAAGGCAGACCGCCGCACAGTGAAATGGCC
GGGCTGTTTGTTCTGTGCCTTGGTAACTTTACACCCCCCCGGGCTGTGTA
GAATATCAGGTCAACACATTTTCTTACTGGAATGGCAGATATTTTTGCTC
CGAGTGCATCCATCAGCCTTTTCTTGTCATTTTCCAGCGGCCACTCAGAA
AAAGATTGAAAGACGAGGAAGAGCGTAAGGAGAAACGATCAACCCCTCTC
AAAAAGAACAGCGCAAGAATGGGACGAGTCATGCTTGCCGCGCTTCTTCT
TATGCTGCCCATAGTAAGGGTGAGAGGTCTTGTGGACCTCAACGAGATTC
CGCATTGGCCAAAGGCCCTCGCCACGGCGCTCAAGCGTCTCCCTGCAGGG
GCGGCGAAGAGCGAAATCCTCGAGGAGGTCAACCTGGAGGACTTCGAAGG
ATTCGACGCCATTTTCGACAAGATCAGCGCCTCTCAGAAAGACGACAGCA
AGAACACGGTTTACGCCACGAGCATCGTTCTCGCGGAGACGTTCACCGTC
CCAGACACGGGAAGCCTGATTGTGCGCGGCGTCGTGGTGCATGGCAGCGC
CGTCTGCCGCGATTCCTTCTGCGCCGTCGTCGAGGCCGTCGATCTCACGG
GCTTCCGCGTCTCCGGCTATGGGGAGCTGCGCAAGGTCTCGGCGCTTGGG
ACAGTGCCGCCGACGCCAGCTGGCGGCTACTTCGTGGCGACGACCGCCCC
CGAGGACGCGTGGGGTGGCTGCTACAACCCGACGCTTCAAAACAGCTTTC
TCGTGGTAGACTGTGACGACCCGTCCGGCGACATCTACAGTACGCTTCGC
GTCGAGTCACGTGACGAGTTGGGGGAACGTATCGTCCTCAGCGGCTTCGG
CCGCGCCGACATGAAGCTCGCCAACGGCGAGTATGACGAAGACGCTACGG
TCGGAGAGATTATCGCGAGCGGCTTTGTCGGGATGTCGTCTGGTAGTGGC
AGTGGCACTCAGTCAATCGACTTGCCATGGTGGCTGGAATGGGCTGTCGA
TTCCTCATCCCTCGACCTGCCGAGCCTGGGAAGCCTCGTCGCGGGCTCCG
TTCCACGCATCTTCGACGCCATGGCCGAGATCCTCCGGCCACCGGACTTC
TCGGCGGCTATGCCGGCGTCGGCTGCGACTGTCGATGAGCTGCTTCGCAT
TCTCTGGTCCTTCGCCGCCGCCCGGCTGTTGCAGCCATACGGGGCCGAGG
AGGAAGCTGCCGCTTCCACCGCCGCCGCGGCCGGCAGCAGCAGCAGCAGC
GGCAGCAGCGGGATCGATGGCGCCACCGCCGCGACGACAAACACGGTGCT
GGACAGCAGCGCGCTCATGGCGCGCGCGACGGTCGGCGTCCCGTCGGAGC
CCACCGTCACGAGCGCTTGCGCCATCGGCACGCTCCTCGTCATCACTGCC
TACTTTGTGGGTCGTGACATTGCAAGTGGGTCGCGCTGGGCCCGTTACCA
CATTTCCCAGCGGCGGGGTGGTGCCGCCGCCCCCGCTGACGGCGATGCCC
CTCCCGCCGACGCCGCCGTCGCCGCCGCTGCCCCCGCTGCCCCTCCCGCC
GACGTCGCCGACGCCCCCGCTGCAGCCGGTCAGCCCGAGAAGCCCAACTG
GAGCCTTTTCGCCGTAGCGCTCGTCGGCCTGTGCCTGGAGTCCTACGGTT
TTCACCTCGCCTGGGCAGATGCTAAGGACTTCAATGCCTACGAGACGACC
TTCGGCATCGTCCGCGTCGTCTCGGCTGACCTGGTGGGCGGCGTCGCTTT
CCTGCGCATCGGCCAGGACATGGACCCGAAGGTCATTGAGACCACTCTAG
TCCGTGTGGAGACGAACGACATCGACACGAGGGCGTTTGTCGTGAGCGCT
GTCTTCGCCGCGCTTTTTGGGCTGCTGGGGCTCGTCGACGAGACGGCCGC
GTGGAAGACGGCGTGGCGGTTCAATGGGCCGCTCGGGCGCGTTAAGCAGA
AGGCCTACTTCGCCGCCCATGGCACCGTGATCATCATCACGCGGGCTGTG
GAGCGCGCCCGCGCGCCGTGGATGTAGGTGTTTTAAAGCCGCATACCGGC
ATCCACATGAGCCCCACCCGCTCTCCGCTGTGGACCCGGCGGCGGCGGGC
GGTGTTGGCGGGTGGACGGACGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6806:611..2784+

>mRNA_P-wetherbeei_contig6806.1.1 ID=mRNA_P-wetherbeei_contig6806.1.1|Name=mRNA_P-wetherbeei_contig6806.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1809bp|location=Sequence derived from alignment at P-wetherbeei_contig6806:611..2784+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGACGAGTCATGCTTGCCGCGCTTCTTCTTATGCTGCCCATAGTAAG
GGTGAGAGGTCTTGTGGACCTCAACGAGATTCCGCATTGGCCAAAGGCCC
TCGCCACGGCGCTCAAGCGTCTCCCTGCAGGGGCGGCGAAGAGCGAAATC
CTCGAGGAGGTCAACCTGGAGGACTTCGAAGGATTCGACGCCATTTTCGA
CAAGATCAGCGCCTCTCAGAAAGACGACAGCAAGAACACGGTTTACGCCA
CGAGCATCGTTCTCGCGGAGACGTTCACCGTCCCAGACACGGGAAGCCTG
ATTGTGCGCGGCGTCGTGGTGCATGGCAGCGCCGTCTGCCGCGATTCCTT
CTGCGCCGTCGTCGAGGCCGTCGATCTCACGGGCTTCCGCGTCTCCGGCT
ATGGGGAGCTGCGCAAGGTCTCGGCGCTTGGGACAGTGCCGCCGACGCCA
GCTGGCGGCTACTTCGTGGCGACGACCGCCCCCGAGGACGCGTGGGGTGG
CTGCTACAACCCGACGCTTCAAAACAGCTTTCTCGTGGTAGACTGTGACG
ACCCGTCCGGCGACATCTACAGTACGCTTCGCGTCGAGTCACGTGACGAG
TTGGGGGAACGTATCGTCCTCAGCGGCTTCGGCCGCGCCGACATGAAGCT
CGCCAACGGCGAGTATGACGAAGACGCTACGGTCGGAGAGATTATCGCGA
GCGGCTTTGTCGGGATGTCGTCTGGTAGTGGCAGTGGCACTCAGTCAATC
GACTTGCCATGGTGGCTGGAATGGGCTGTCGATTCCTCATCCCTCGACCT
GCCGAGCCTGGGAAGCCTCGTCGCGGGCTCCGTTCCACGCATCTTCGACG
CCATGGCCGAGATCCTCCGGCCACCGGACTTCTCGGCGGCTATGCCGGCG
TCGGCTGCGACTGTCGATGAGCTGCTTCGCATTCTCTGGTCCTTCGCCGC
CGCCCGGCTGTTGCAGCCATACGGGGCCGAGGAGGAAGCTGCCGCTTCCA
CCGCCGCCGCGGCCGGCAGCAGCAGCAGCAGCGGCAGCAGCGGGATCGAT
GGCGCCACCGCCGCGACGACAAACACGGTGCTGGACAGCAGCGCGCTCAT
GGCGCGCGCGACGGTCGGCGTCCCGTCGGAGCCCACCGTCACGAGCGCTT
GCGCCATCGGCACGCTCCTCGTCATCACTGCCTACTTTGTGGGTCGTGAC
ATTGCAAGTGGGTCGCGCTGGGCCCGTTACCACATTTCCCAGCGGCGGGG
TGGTGCCGCCGCCCCCGCTGACGGCGATGCCCCTCCCGCCGACGCCGCCG
TCGCCGCCGCTGCCCCCGCTGCCCCTCCCGCCGACGTCGCCGACGCCCCC
GCTGCAGCCGGTCAGCCCGAGAAGCCCAACTGGAGCCTTTTCGCCGTAGC
GCTCGTCGGCCTGTGCCTGGAGTCCTACGGTTTTCACCTCGCCTGGGCAG
ATGCTAAGGACTTCAATGCCTACGAGACGACCTTCGGCATCGTCCGCGTC
GTCTCGGCTGACCTGGTGGGCGGCGTCGCTTTCCTGCGCATCGGCCAGGA
CATGGACCCGAAGGTCATTGAGACCACTCTAGTCCGTGTGGAGACGAACG
ACATCGACACGAGGGCGTTTGTCGTGAGCGCTGTCTTCGCCGCGCTTTTT
GGGCTGCTGGGGCTCGTCGACGAGACGGCCGCGTGGAAGACGGCGTGGCG
GTTCAATGGGCCGCTCGGGCGCGTTAAGCAGAAGGCCTACTTCGCCGCCC
ATGGCACCGTGATCATCATCACGCGGGCTGTGGAGCGCGCCCGCGCGCCG
TGGATGTAG
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