mRNA_P-wetherbeei_contig680.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig680.2.1
Unique NamemRNA_P-wetherbeei_contig680.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig680.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig680contigP-wetherbeei_contig680:1817..3592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1776
Hectar predicted targeting categoryother localisation
Exons1
Cds size1056
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186938.5799105-UTR-P-wetherbeei_contig680:1816..24291683186938.5799105-UTR-P-wetherbeei_contig680:1816..2429Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig680 1817..2429 -
1683186938.6016665-UTR-P-wetherbeei_contig680:3485..35921683186938.6016665-UTR-P-wetherbeei_contig680:3485..3592Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig680 3486..3592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186938.590316-CDS-P-wetherbeei_contig680:2429..34851683186938.590316-CDS-P-wetherbeei_contig680:2429..3485Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig680 2430..3485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig680.2.1prot_P-wetherbeei_contig680.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig680 2430..3485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig680.2.1

>prot_P-wetherbeei_contig680.2.1 ID=prot_P-wetherbeei_contig680.2.1|Name=mRNA_P-wetherbeei_contig680.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=352bp
MALAGSLASAAGAGSAASGLMQSSTQQWRLEEPPAAPHASGLSQLAFDPF
SAAEAQRWPLSPFNPDTVPNPFGVQSAGASFLWDSERGRGSAGAGSSDAH
RVGAAGAESGSFGGGDGGGGGFGFFGADDAGNGSGGGRFSDFVGDAPRET
LLSPQYAPTLQQRAVPSSAAQMIAAMATAMPRTASVAYAPFGAGQGRGRG
TLWPEAWQPAAWSPPQPPQPPPPQALASLDGGVQWGGAQSLQAPSEAAPA
ATVAAAMAAAARTAMEENLMWFGLADLLTEDGPAASSARSAGAAKTGSFG
RNDGGGGGGFGHGSSSGFGSGCSGGFGSDDGSGGSGIGGGTTGDIGDGGK
G*
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mRNA from alignment at P-wetherbeei_contig680:1817..3592-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig680.2.1 ID=mRNA_P-wetherbeei_contig680.2.1|Name=mRNA_P-wetherbeei_contig680.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1776bp|location=Sequence derived from alignment at P-wetherbeei_contig680:1817..3592- (Phaeothamnion wetherbeei SAG_119_79)
GGGAGCAGGAGCAGGAGCGGGAGCGGGAGCGGCAGCTGTCGTCGTCGCCG
CGGTCGTCGCTGCCGCTGCCACCGCTGCAGCCTTTACAAGGCTGGGAAGA
GCCAAGCATGGCGCTTGCCGGCTCCCTCGCTTCCGCCGCTGGCGCCGGGT
CGGCCGCGAGCGGCCTCATGCAGTCGTCGACCCAGCAATGGCGGCTCGAG
GAGCCTCCCGCTGCACCGCATGCCAGCGGCCTCAGTCAACTCGCTTTCGA
CCCGTTTTCCGCGGCCGAGGCACAGAGATGGCCGCTGTCTCCATTCAACC
CGGACACAGTCCCCAACCCATTTGGCGTCCAATCCGCTGGAGCGAGCTTT
CTGTGGGACAGCGAAAGGGGCAGGGGCAGCGCCGGTGCCGGCAGCAGCGA
TGCCCACCGAGTTGGCGCTGCCGGCGCTGAAAGTGGCAGTTTTGGCGGCG
GCGACGGCGGCGGTGGCGGCTTCGGCTTCTTTGGTGCGGACGACGCCGGC
AACGGCAGTGGTGGCGGCAGGTTCAGTGACTTTGTCGGAGATGCCCCGCG
TGAGACGCTGCTCAGCCCTCAGTACGCCCCGACGCTGCAGCAGCGGGCAG
TACCGTCGTCTGCCGCACAAATGATCGCCGCGATGGCGACAGCGATGCCA
AGGACGGCGTCGGTGGCATATGCGCCCTTCGGTGCCGGTCAAGGCAGAGG
TAGAGGAACCCTTTGGCCCGAAGCATGGCAGCCTGCGGCATGGTCGCCGC
CGCAACCGCCGCAGCCGCCGCCACCACAGGCGCTCGCCTCGCTCGACGGC
GGAGTACAGTGGGGCGGCGCGCAGTCGCTGCAGGCCCCCTCAGAGGCGGC
ACCGGCCGCAACAGTGGCGGCAGCGATGGCGGCGGCGGCGCGGACGGCAA
TGGAGGAGAACCTCATGTGGTTCGGCCTTGCAGACCTGTTGACGGAGGAC
GGCCCGGCTGCCAGCAGCGCGCGAAGCGCTGGCGCCGCCAAGACCGGCAG
CTTCGGACGCAATGACGGTGGCGGTGGTGGTGGTTTTGGCCACGGCAGCA
GCAGCGGTTTTGGCAGCGGCTGCAGCGGCGGATTTGGCAGCGACGATGGC
AGTGGCGGCAGCGGCATTGGCGGTGGCACTACTGGTGACATCGGCGATGG
CGGAAAGGGGTGATGAGGACTGTATCCTTACTGGCTTAGGGGTTGTACTG
CAGTACTGCAGAGTTCAGGTTTAAGAGAAGATGCGCAATGCGGTCCTTCG
GCTTGGCGGCGGCCGCAGGCGCGGCATGCGCGGCGGGCAGCGGACTCTTT
TTGAAACACAGGTCCTATTCGAGCAGCTGCTGCTTGTACTGCTGCGATAG
ATAAAACAATTGCTCAGGGGTATGCAGGAGAGAGAGCGCGAGCGGAAGGG
AGGGCAAGCATTCACATCGCGAGATGAGGTGAGACGGGGCCACGAATTGT
TAGTATGCGGAAGGGTGGTCGTAAAGATTCCCGGCGGGAGGCAGCGCACC
TGTTCTCCTGTCTGCACCCAGAGGGAGCAACCAGCAAAATAGAAGGCGCA
GCGCGCTGAGAGGTGCACCTACCACTGTTAGTAATAACAGGCTTCTCCCG
CCGATGGAAGGCAGGTGGCCGCTGGGGAAAGCGGTACCAATGGGATAGGC
AAGCCGTTAGCTGGAACCAGCAGTAGGTGGAAGCAATTATAGGCAGTTCC
TAACTGCTGTGGAAGGCCAGTTGGCGAGGCCATGTTTCTTCTCACTTCTC
AACTCAGCAAGGGAGCATAATGCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig680:1817..3592-

>mRNA_P-wetherbeei_contig680.2.1 ID=mRNA_P-wetherbeei_contig680.2.1|Name=mRNA_P-wetherbeei_contig680.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1056bp|location=Sequence derived from alignment at P-wetherbeei_contig680:1817..3592- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCTTGCCGGCTCCCTCGCTTCCGCCGCTGGCGCCGGGTCGGCCGC
GAGCGGCCTCATGCAGTCGTCGACCCAGCAATGGCGGCTCGAGGAGCCTC
CCGCTGCACCGCATGCCAGCGGCCTCAGTCAACTCGCTTTCGACCCGTTT
TCCGCGGCCGAGGCACAGAGATGGCCGCTGTCTCCATTCAACCCGGACAC
AGTCCCCAACCCATTTGGCGTCCAATCCGCTGGAGCGAGCTTTCTGTGGG
ACAGCGAAAGGGGCAGGGGCAGCGCCGGTGCCGGCAGCAGCGATGCCCAC
CGAGTTGGCGCTGCCGGCGCTGAAAGTGGCAGTTTTGGCGGCGGCGACGG
CGGCGGTGGCGGCTTCGGCTTCTTTGGTGCGGACGACGCCGGCAACGGCA
GTGGTGGCGGCAGGTTCAGTGACTTTGTCGGAGATGCCCCGCGTGAGACG
CTGCTCAGCCCTCAGTACGCCCCGACGCTGCAGCAGCGGGCAGTACCGTC
GTCTGCCGCACAAATGATCGCCGCGATGGCGACAGCGATGCCAAGGACGG
CGTCGGTGGCATATGCGCCCTTCGGTGCCGGTCAAGGCAGAGGTAGAGGA
ACCCTTTGGCCCGAAGCATGGCAGCCTGCGGCATGGTCGCCGCCGCAACC
GCCGCAGCCGCCGCCACCACAGGCGCTCGCCTCGCTCGACGGCGGAGTAC
AGTGGGGCGGCGCGCAGTCGCTGCAGGCCCCCTCAGAGGCGGCACCGGCC
GCAACAGTGGCGGCAGCGATGGCGGCGGCGGCGCGGACGGCAATGGAGGA
GAACCTCATGTGGTTCGGCCTTGCAGACCTGTTGACGGAGGACGGCCCGG
CTGCCAGCAGCGCGCGAAGCGCTGGCGCCGCCAAGACCGGCAGCTTCGGA
CGCAATGACGGTGGCGGTGGTGGTGGTTTTGGCCACGGCAGCAGCAGCGG
TTTTGGCAGCGGCTGCAGCGGCGGATTTGGCAGCGACGATGGCAGTGGCG
GCAGCGGCATTGGCGGTGGCACTACTGGTGACATCGGCGATGGCGGAAAG
GGGTGA
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