mRNA_P-wetherbeei_contig6791.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6791.3.1
Unique NamemRNA_P-wetherbeei_contig6791.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6791.3.1 vs. uniprot
Match: A0A482ZNW2_9GAMM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=uncultured SUP05 cluster bacterium TaxID=655186 RepID=A0A482ZNW2_9GAMM)

HSP 1 Score: 102 bits (253), Expect = 3.930e-22
Identity = 58/124 (46.77%), Postives = 79/124 (63.71%), Query Frame = 2 
Query:  110 NTASQWGFMWEGALVLFW*PSTESEYMAVCSAAQEAVYLRSLFSDPGFPQVDATVILEDNQSAIALANAAVEQWHARARHMDVCYKFIMERVRSGEIKLHYIKTTEQLADMLTKTLGPMLFRKL 481
             TA  W    + ++ L    + ESEYMA+ SAAQEAV++R L SD G PQ   T+I EDNQSAIA+A     Q+H R++H+ + Y FI E+V + +I L Y  T + +AD+LTK +GP  F KL
Sbjct:  217 GTAVTWKCKKQSSVAL---STAESEYMALSSAAQEAVWIRELNSDLGNPQSQPTLIYEDNQSAIAMAKNP--QFHGRSKHIGIKYHFIREQVSNDKICLQYCPTEDMIADILTKGIGPEKFEKL 335
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BLAST of mRNA_P-wetherbeei_contig6791.3.1 vs. uniprot
Match: A0A6A3S6J5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3S6J5_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.880e-20
Identity = 49/104 (47.12%), Postives = 65/104 (62.50%), Query Frame = 2 
Query:  170 STESEYMAVCSAAQEAVYLRSLFSDPGFPQVDATVILEDNQSAIALANAAVEQWHARARHMDVCYKFIMERVRSGEIKLHYIKTTEQLADMLTKTLGPMLFRKL 481
            STE+EYMA+    +E +++R L  D G  QV ATVI EDNQ A+ALAN     + A  +H+D+ Y FI E+V S E++L Y+ T  QLAD +TK L     R L
Sbjct:  102 STEAEYMALSDCVKECIWMRRLLKDIGADQVGATVIYEDNQGAMALANNV--DYQAHTKHIDIRYHFIREKVVSNEVELEYMDTKNQLADFMTKGLSSKTLRYL 203
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BLAST of mRNA_P-wetherbeei_contig6791.3.1 vs. uniprot
Match: A0A6G0SFH2_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SFH2_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.640e-20
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 2 
Query:  170 STESEYMAVCSAAQEAVYLRSLFSDPGFPQVDATVILEDNQSAIALANAAVEQWHARARHMDVCYKFIMERVRSGEIKLHYIKTTEQLADMLTKTLG 460
            STE+EYMA+    +E +++R L  D G  QV ATVI EDNQ A+ALAN     + A  +H+D+ Y FI E+V S E++L Y+ T  QLAD +TK L 
Sbjct:   49 STEAEYMALSDCVKECIWMRRLLKDIGADQVGATVIYEDNQGAMALANNV--DYQAHTKHIDIRYHFIREKVVSNEVELEYMDTKNQLADFMTKGLS 143
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BLAST of mRNA_P-wetherbeei_contig6791.3.1 vs. uniprot
Match: A0A329T4J8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T4J8_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.350e-19
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 2 
Query:  170 STESEYMAVCSAAQEAVYLRSLFSDPGFPQVDATVILEDNQSAIALANAAVEQWHARARHMDVCYKFIMERVRSGEIKLHYIKTTEQLADMLTKTLG 460
            S E+EYMA+    QE ++ R++  D G  QV AT + EDNQ AIALA+ A   +HAR +H+D+ + FI E V    +K+ YI T  QLADMLTKTLG
Sbjct:  127 SAEAEYMALTLCTQEVLWTRAMLKDMGHEQVGATRVWEDNQGAIALASNA--GYHARTKHVDIRHHFIRENVERRTLKVDYIDTKRQLADMLTKTLG 221
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BLAST of mRNA_P-wetherbeei_contig6791.3.1 vs. uniprot
Match: UPI001C093D0F (LOW QUALITY PROTEIN: secreted RxLR effector protein 161-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C093D0F)

HSP 1 Score: 93.2 bits (230), Expect = 1.510e-19
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 2 
Query:  170 STESEYMAVCSAAQEAVYLRSLFSDPGFPQVDATVILEDNQSAIALANAAVEQWHARARHMDVCYKFIMERVRSGEIKLHYIKTTEQLADMLTKTLGPMLFRKL 481
            + E+EYMA+ SAAQEAV++R L SD       ATVI EDNQSAI +A     Q+H RA+H+D+ + FI ++V SG + L   KT + +ADMLTK L  + F KL
Sbjct:  136 TAEAEYMALASAAQEAVWMRQLLSDLKNCPAGATVIYEDNQSAICMARNP--QFHGRAKHIDIKHHFIRDQVASGAVDLKDCKTDDMIADMLTKGLTQVKFIKL 237
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BLAST of mRNA_P-wetherbeei_contig6791.3.1 vs. uniprot
Match: A0A2P4Y1U4_9STRA (Polyprotein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y1U4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.670e-19
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 2 
Query:  170 STESEYMAVCSAAQEAVYLRSLFSDPGFPQVDATVILEDNQSAIALANAAVEQWHARARHMDVCYKFIMERVRSGEIKLHYIKTTEQLADMLTKTLGPMLFRKL 481
            STE+EYMA+    +E V++R L  D G  Q  +T+I EDNQ A+ALAN+   Q  AR +H+D+ Y FI E+V SGE++L Y ++  QLAD LTK L   +   L
Sbjct:    6 STEAEYMALNDCIKEVVWMRRLLKDIGAEQHGSTMIYEDNQGAMALANSVGYQ--ARTKHIDIRYHFIREKVASGEVELTYEESKNQLADFLTKGLSMKMLHYL 107
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BLAST of mRNA_P-wetherbeei_contig6791.3.1 vs. uniprot
Match: A0A7D9HZJ0_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZJ0_PARCT)

HSP 1 Score: 94.7 bits (234), Expect = 3.290e-19
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 2 
Query:  170 STESEYMAVCSAAQEAVYLRSLFSDPGFPQVDATVILEDNQSAIALANAAVEQWHARARHMDVCYKFIMERVRSGEIKLHYIKTTEQLADMLTKTL 457
            + E+EY A+ +AAQEA+YLR+L  D GFP   AT I EDNQS I + +  V   H R++H+D    FI ERV + EIK+HY+ T E  AD+LTK+L
Sbjct:  297 TAEAEYQAMAAAAQEAIYLRALLKDFGFPMEKATDIGEDNQSCIKMCHNPV--MHKRSKHIDTKLHFIRERVENKEIKIHYVPTEEMTADILTKSL 390
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BLAST of mRNA_P-wetherbeei_contig6791.3.1 vs. uniprot
Match: A0A6S7HE32_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HE32_PARCT)

HSP 1 Score: 94.7 bits (234), Expect = 4.500e-19
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 2 
Query:  170 STESEYMAVCSAAQEAVYLRSLFSDPGFPQVDATVILEDNQSAIALANAAVEQWHARARHMDVCYKFIMERVRSGEIKLHYIKTTEQLADMLTKTL 457
            + E+EY A+ +AAQEA+YLR+L  D GFP   AT I EDNQS I + +  V   H R++H+D    FI ERV + EIK+HY+ T E  AD+LTK+L
Sbjct:  346 TAEAEYQAMAAAAQEAIYLRALLKDFGFPMEKATDIGEDNQSCIKMCHNPV--MHKRSKHIDTKLHFIRERVENKEIKIHYVPTEEMTADILTKSL 439
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BLAST of mRNA_P-wetherbeei_contig6791.3.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 95.1 bits (235), Expect = 5.160e-19
Identity = 50/104 (48.08%), Postives = 67/104 (64.42%), Query Frame = 2 
Query:  170 STESEYMAVCSAAQEAVYLRSLFSDPGFPQVDATVILEDNQSAIALANAAVEQWHARARHMDVCYKFIMERVRSGEIKLHYIKTTEQLADMLTKTLGPMLFRKL 481
            + E+EYMA+ SAAQEAV++R L +D    Q   TV+ EDNQSAI +A  +  Q+H RA+H+D+ Y FI E++  G I L Y  T + +ADM TK L    F KL
Sbjct:  639 TAEAEYMALASAAQEAVWMRQLMTDLKVNQAGPTVMFEDNQSAICMAKNS--QFHGRAKHIDIKYHFIREKIAGGVIDLQYCNTDDMVADMFTKGLSQEKFVKL 740
[Close]
BLAST of mRNA_P-wetherbeei_contig6791.3.1 vs. uniprot
Match: A0A7D9J3T8_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J3T8_PARCT)

HSP 1 Score: 94.7 bits (234), Expect = 6.510e-19
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 2 
Query:  170 STESEYMAVCSAAQEAVYLRSLFSDPGFPQVDATVILEDNQSAIALANAAVEQWHARARHMDVCYKFIMERVRSGEIKLHYIKTTEQLADMLTKTL 457
            + E+EY A+ +AAQEA+YLR+L  D GFP   AT I EDNQS I + +  V   H R++H+D    FI ERV + EIK+HY+ T E  AD+LTK+L
Sbjct:  495 TVEAEYQAMAAAAQEAIYLRALLKDFGFPMEKATDIGEDNQSCIKMCHNPV--MHKRSKHIDTKLHFIRERVENKEIKIHYVPTEEMTADILTKSL 588
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6791.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482ZNW2_9GAMM3.930e-2246.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3S6J5_9STRA5.880e-2047.12Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6G0SFH2_9STRA6.640e-2048.45Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]
A0A329T4J8_9STRA1.350e-1950.52Uncharacterized protein n=2 Tax=Phytophthora cacto... [more]
UPI001C093D0F1.510e-1950.00LOW QUALITY PROTEIN: secreted RxLR effector protei... [more]
A0A2P4Y1U4_9STRA1.670e-1947.12Polyprotein n=1 Tax=Phytophthora palmivora var. pa... [more]
A0A7D9HZJ0_PARCT3.290e-1951.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HE32_PARCT4.500e-1951.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A498M2F0_LABRO5.160e-1948.08Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9J3T8_PARCT6.510e-1951.04Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6791contigP-wetherbeei_contig6791:2587..3233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo131909
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size647
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.53e-16
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size324
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186938.0979116-UTR-P-wetherbeei_contig6791:2586..27221683186938.0979116-UTR-P-wetherbeei_contig6791:2586..2722Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6791 2587..2722 -
1683186938.1239545-UTR-P-wetherbeei_contig6791:3046..32331683186938.1239545-UTR-P-wetherbeei_contig6791:3046..3233Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6791 3047..3233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186938.1110616-CDS-P-wetherbeei_contig6791:2722..30461683186938.1110616-CDS-P-wetherbeei_contig6791:2722..3046Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6791 2723..3046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6791.3.1prot_P-wetherbeei_contig6791.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6791 2723..3046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6791.3.1

>prot_P-wetherbeei_contig6791.3.1 ID=prot_P-wetherbeei_contig6791.3.1|Name=mRNA_P-wetherbeei_contig6791.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MAVCSAAQEAVYLRSLFSDPGFPQVDATVILEDNQSAIALANAAVEQWHA
RARHMDVCYKFIMERVRSGEIKLHYIKTTEQLADMLTKTLGPMLFRKLSA
FIMRIRA*
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mRNA from alignment at P-wetherbeei_contig6791:2587..3233-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6791.3.1 ID=mRNA_P-wetherbeei_contig6791.3.1|Name=mRNA_P-wetherbeei_contig6791.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=647bp|location=Sequence derived from alignment at P-wetherbeei_contig6791:2587..3233- (Phaeothamnion wetherbeei SAG_119_79)
CGCGGTTGTAGAGGACACACCGCCCCGCAGACACCTCAATCATGACATGA
AACCTGACAAGGTATGTGCCATTTTCATTTCCTACATCAATTCCTCAAAG
GTCTTACCGAACACCGCCTCACAGTGGGGTTTCATGTGGGAAGGAGCTCT
TGTTCTTTTTTGGTGACCTTCCACCGAGAGTGAGTACATGGCCGTATGCA
GCGCCGCACAGGAGGCAGTCTACCTCCGCTCCCTGTTCTCTGACCCCGGT
TTCCCTCAGGTGGACGCCACAGTCATCCTGGAGGACAACCAGTCGGCCAT
CGCTCTTGCCAACGCGGCAGTCGAGCAATGGCACGCCCGCGCGCGCCACA
TGGACGTATGCTACAAGTTTATCATGGAGCGCGTGCGCAGCGGCGAGATC
AAACTGCACTATATCAAGACGACGGAGCAACTCGCCGACATGTTGACCAA
AACCCTCGGCCCCATGCTTTTCCGTAAGCTGAGTGCGTTCATCATGAGGA
TCCGGGCGTGAGGGGGCGTTTACTCCGCCACGGAGCGCCCCTGGCATTTT
TCTTTCCTTCCCCGTTTTCTCGTCGCCGCTTAGGCTCGACCGAGGGGGCG
TGTTAGAGATTGAGCACACGCGCCGCCGCAAGGATTGCGTCTGCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6791:2587..3233-

>mRNA_P-wetherbeei_contig6791.3.1 ID=mRNA_P-wetherbeei_contig6791.3.1|Name=mRNA_P-wetherbeei_contig6791.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig6791:2587..3233- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGTATGCAGCGCCGCACAGGAGGCAGTCTACCTCCGCTCCCTGTT
CTCTGACCCCGGTTTCCCTCAGGTGGACGCCACAGTCATCCTGGAGGACA
ACCAGTCGGCCATCGCTCTTGCCAACGCGGCAGTCGAGCAATGGCACGCC
CGCGCGCGCCACATGGACGTATGCTACAAGTTTATCATGGAGCGCGTGCG
CAGCGGCGAGATCAAACTGCACTATATCAAGACGACGGAGCAACTCGCCG
ACATGTTGACCAAAACCCTCGGCCCCATGCTTTTCCGTAAGCTGAGTGCG
TTCATCATGAGGATCCGGGCGTGA
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