prot_P-wetherbeei_contig6789.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig6789.2.1
Unique Nameprot_P-wetherbeei_contig6789.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length111
Homology
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A7S0PIB0_CAFRO (DNA-directed RNA polymerase subunit n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PIB0_CAFRO)

HSP 1 Score: 143 bits (360), Expect = 4.920e-42
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 0
Query:    2 VFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 110
            + FCPTCGN+L+ +G   G G +F C TCPY+  +    KIT    L+RKT DD+LGG AAW NVD+T+A+CPAC H++AYFMQ Q+RSADEPMTTFY+C +C   W++
Sbjct:   16 MLFCPTCGNMLLIEG---GAGTKFFCTTCPYIQRVTT--KITKSITLERKTVDDVLGGAAAWENVDQTDALCPACGHRRAYFMQLQIRSADEPMTTFYKCVACSGRWND 119          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: C1DZH6_MICCC (DNA-directed RNA polymerase subunit n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZH6_MICCC)

HSP 1 Score: 140 bits (353), Expect = 4.220e-41
Identity = 64/112 (57.14%), Postives = 75/112 (66.96%), Query Frame = 0
Query:    1 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLK--RKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 110
            M+ FCP C N+L+ D    GGG +  CQTCPY H I      T+  P+K  RK  DD+LGG+ AW NVDKT A CP C H QAYFMQ Q+RSADEPM+TFY+CC C N W E
Sbjct:    1 MLSFCPHCANMLLVDHCPEGGGLKLYCQTCPYEHAITE----TIRDPIKIARKQVDDVLGGDDAWKNVDKTSATCPKCDHGQAYFMQIQIRSADEPMSTFYKCCKCANQWRE 108          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A7SWZ1_NEMVE (DNA-directed RNA polymerase subunit n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SWZ1_NEMVE)

HSP 1 Score: 139 bits (350), Expect = 1.170e-40
Identity = 62/110 (56.36%), Postives = 74/110 (67.27%), Query Frame = 0
Query:    1 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 110
            M+ FCP+C N+L+ +        RF CQTCPYVH I   KK++     K K  DD+LGG++AW NVD TE  CP C H +AYFMQ Q RSADEPMTTFY+CCSC N W E
Sbjct:    1 MLLFCPSCANVLVVEEGTGPSAYRFACQTCPYVHNIA--KKVSSKKYPKLKEVDDVLGGKSAWENVDSTEERCPKCDHNRAYFMQIQTRSADEPMTTFYKCCSCGNRWKE 108          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A336L2C6_CULSO (DNA-directed RNA polymerase subunit n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336L2C6_CULSO)

HSP 1 Score: 139 bits (350), Expect = 1.210e-40
Identity = 64/112 (57.14%), Postives = 79/112 (70.54%), Query Frame = 0
Query:    1 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCS--CKNMWSE 110
            M+FFCPTCGNLL+ +   +GG  RF C TCPY+   ++ KKI+  T  K K  D ++GG AAW NVD T+A CP C HK+AYFMQ Q RSADEPMTTFYRCC+  C + W +
Sbjct:    1 MLFFCPTCGNLLLIEEDTTGG-NRFSCNTCPYI--CRINKKISYRTYPKLKEVDHVMGGSAAWENVDSTDAECPNCSHKRAYFMQMQTRSADEPMTTFYRCCNEKCAHNWRD 109          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A024UTD8_9STRA (DNA-directed RNA polymerase subunit n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UTD8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.220e-40
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 0
Query:    2 VFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 110
            + FCPTCGNLLM +    G   RF CQTCPY++  K+ +K+    PL+RK  DD+LGG+ AW NVD+T+  CP C H +AYFMQ Q+RSADEP TTFY+C  CK  W++
Sbjct:    1 MHFCPTCGNLLMVEPDSDG--MRFCCQTCPYIY--KINQKVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHTKAYFMQIQIRSADEPSTTFYKCTGCKKQWND 105          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A836CB68_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB68_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.540e-39
Identity = 63/113 (55.75%), Postives = 74/113 (65.49%), Query Frame = 0
Query:    2 VFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMH----KQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 110
            + FCPTCGNLLM + +  GG QRF CQTCPYVH +  G K+T    L+RK  DD+LGG  AW+NVDK    C  C      K+AYF Q QLRSADEPMT FY+C  C   W+E
Sbjct:    1 MLFCPTCGNLLMVEAATRGG-QRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A1Y1IMC9_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMC9_KLENI)

HSP 1 Score: 136 bits (342), Expect = 1.990e-39
Identity = 65/109 (59.63%), Postives = 76/109 (69.72%), Query Frame = 0
Query:    4 FCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCS--CKNMWSE 110
            FCPTC NLL+ +G   G   R+ CQTCPYV+ IK   K  L  PL RK  DD+LGGE AW NVDKTEA CP C + +AYFMQ Q+RSADEPM+TFY+CC   C + W E
Sbjct:    3 FCPTCANLLLVEGGNMGE-LRYFCQTCPYVYTIKAKMKNKL--PLARKEVDDVLGGEEAWRNVDKTEATCPKCRYGEAYFMQIQIRSADEPMSTFYKCCKPECSHQWRE 108          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A6P8HU17_ACTTE (DNA-directed RNA polymerase subunit n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HU17_ACTTE)

HSP 1 Score: 135 bits (340), Expect = 3.900e-39
Identity = 62/110 (56.36%), Postives = 72/110 (65.45%), Query Frame = 0
Query:    1 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 110
            M+ FCPTC N+L+ +        RF CQTCPYV+ I   KKI+     K K  DD+LGG+ AW NVD TE  CP C H +AYFMQ Q RSADEPMTTFY+CC C N W E
Sbjct:    1 MLLFCPTCANVLIVEEGSGCSSYRFACQTCPYVYNIT--KKISNRKYPKLKEVDDVLGGKNAWENVDSTEERCPKCEHDRAYFMQIQTRSADEPMTTFYKCCKCGNRWKE 108          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A0L0H4Y6_SPIPD (DNA-directed RNA polymerase subunit n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H4Y6_SPIPD)

HSP 1 Score: 135 bits (339), Expect = 5.370e-39
Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 0
Query:    2 VFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 110
            ++FCP+C NLL+    ++G  Q F CQTCPYV   ++ K+IT  T  KRK  DD+LGG AAW NVD TEA CP C H +AYFMQ Q+RSADEPM+ F++CC C   W E
Sbjct:    1 MYFCPSCANLLLIAQGEAGTNQ-FVCQTCPYV--CRINKQITQKTHFKRKQVDDVLGGAAAWENVDSTEARCPRCEHGRAYFMQLQIRSADEPMSIFFKCCKCAEQWRE 106          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A0G4I9C6_9ALVE (DNA-directed RNA polymerase subunit n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I9C6_9ALVE)

HSP 1 Score: 135 bits (339), Expect = 5.370e-39
Identity = 59/110 (53.64%), Postives = 76/110 (69.09%), Query Frame = 0
Query:    1 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 110
            M  FCPTC N+L+ D  +S    RF C+TCPY+   K+ KK+T  T ++ K  DD+LGG+ AW NV+KTEA+CP C ++ AYF Q Q+RSADEPMTTFY+C  C   W E
Sbjct:    1 MAVFCPTCANILLVD--RSNEQLRFFCRTCPYI--FKVEKKVTSKTVMETKKADDVLGGKEAWANVEKTEAICPKCAYRMAYFRQLQIRSADEPMTTFYKCVQCSRQWRE 106          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0PIB0_CAFRO4.920e-4256.88DNA-directed RNA polymerase subunit n=2 Tax=Cafete... [more]
C1DZH6_MICCC4.220e-4157.14DNA-directed RNA polymerase subunit n=1 Tax=Microm... [more]
A7SWZ1_NEMVE1.170e-4056.36DNA-directed RNA polymerase subunit n=1 Tax=Nemato... [more]
A0A336L2C6_CULSO1.210e-4057.14DNA-directed RNA polymerase subunit n=1 Tax=Culico... [more]
A0A024UTD8_9STRA2.220e-4055.05DNA-directed RNA polymerase subunit n=8 Tax=Saprol... [more]
A0A836CB68_9STRA1.540e-3955.75DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A1Y1IMC9_KLENI1.990e-3959.63DNA-directed RNA polymerase subunit n=1 Tax=Klebso... [more]
A0A6P8HU17_ACTTE3.900e-3956.36DNA-directed RNA polymerase subunit n=1 Tax=Actini... [more]
A0A0L0H4Y6_SPIPD5.370e-3955.96DNA-directed RNA polymerase subunit n=2 Tax=Spizel... [more]
A0A0G4I9C6_9ALVE5.370e-3953.64DNA-directed RNA polymerase subunit n=1 Tax=Chrome... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 71..110
e-value: 4.0E-16
score: 69.6
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 72..108
e-value: 2.1E-18
score: 65.8
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 73..108
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 69..109
score: 14.074286
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 3..56
e-value: 0.0031
score: 26.0
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 4..33
e-value: 2.7E-8
score: 33.5
NoneNo IPR availableGENE3D2.20.25.10coord: 59..110
e-value: 1.3E-19
score: 71.4
NoneNo IPR availablePANTHERPTHR11239:SF12DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10coord: 3..110
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 49..110
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 2..110
e-value: 1.3E-29
score: 101.0
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 3..110
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 4..30
IPR034014Pol III subunit C11, C-terminal zinc ribbonCDDcd10509Zn-ribbon_RPC11coord: 65..110
e-value: 1.28109E-24
score: 86.1002

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6789contigP-wetherbeei_contig6789:2081..2413 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6789.2.1mRNA_P-wetherbeei_contig6789.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig6789 1584..2534 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig6789.2.1 ID=prot_P-wetherbeei_contig6789.2.1|Name=mRNA_P-wetherbeei_contig6789.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKR
KTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYR
CCSCKNMWSE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR019761DNA-dir_RNA_pol-M_15_CS
IPR034014Zn_ribbon_RPC11_C