mRNA_P-wetherbeei_contig6789.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6789.2.1
Unique NamemRNA_P-wetherbeei_contig6789.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A7S0PIB0_CAFRO (DNA-directed RNA polymerase subunit n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PIB0_CAFRO)

HSP 1 Score: 143 bits (360), Expect = 4.150e-39
Identity = 63/118 (53.39%), Postives = 84/118 (71.19%), Query Frame = 2
Query:   98 KTRSIAHTMVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
            + R+     + FCPTCGN+L+ +G   G G +F C TCPY+  +    KIT    L+RKT DD+LGG AAW NVD+T+A+CPAC H++AYFMQ Q+RSADEPMTTFY+C +C   W++
Sbjct:    7 RGRAAGSRTMLFCPTCGNMLLIEG---GAGTKFFCTTCPYIQRVTT--KITKSITLERKTVDDVLGGAAAWENVDQTDALCPACGHRRAYFMQLQIRSADEPMTTFYKCVACSGRWND 119          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: C1DZH6_MICCC (DNA-directed RNA polymerase subunit n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZH6_MICCC)

HSP 1 Score: 139 bits (350), Expect = 9.500e-38
Identity = 64/112 (57.14%), Postives = 75/112 (66.96%), Query Frame = 2
Query:  122 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLK--RKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
            M+ FCP C N+L+ D    GGG +  CQTCPY H I      T+  P+K  RK  DD+LGG+ AW NVDKT A CP C H QAYFMQ Q+RSADEPM+TFY+CC C N W E
Sbjct:    1 MLSFCPHCANMLLVDHCPEGGGLKLYCQTCPYEHAITE----TIRDPIKIARKQVDDVLGGDDAWKNVDKTSATCPKCDHGQAYFMQIQIRSADEPMSTFYKCCKCANQWRE 108          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A7SWZ1_NEMVE (DNA-directed RNA polymerase subunit n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SWZ1_NEMVE)

HSP 1 Score: 138 bits (347), Expect = 2.580e-37
Identity = 62/110 (56.36%), Postives = 74/110 (67.27%), Query Frame = 2
Query:  122 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
            M+ FCP+C N+L+ +        RF CQTCPYVH I   KK++     K K  DD+LGG++AW NVD TE  CP C H +AYFMQ Q RSADEPMTTFY+CCSC N W E
Sbjct:    1 MLLFCPSCANVLVVEEGTGPSAYRFACQTCPYVHNIA--KKVSSKKYPKLKEVDDVLGGKSAWENVDSTEERCPKCDHNRAYFMQIQTRSADEPMTTFYKCCSCGNRWKE 108          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A336L2C6_CULSO (DNA-directed RNA polymerase subunit n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336L2C6_CULSO)

HSP 1 Score: 138 bits (347), Expect = 2.660e-37
Identity = 64/112 (57.14%), Postives = 79/112 (70.54%), Query Frame = 2
Query:  122 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCS--CKNMWSE 451
            M+FFCPTCGNLL+ +   +GG  RF C TCPY+   ++ KKI+  T  K K  D ++GG AAW NVD T+A CP C HK+AYFMQ Q RSADEPMTTFYRCC+  C + W +
Sbjct:    1 MLFFCPTCGNLLLIEEDTTGG-NRFSCNTCPYI--CRINKKISYRTYPKLKEVDHVMGGSAAWENVDSTDAECPNCSHKRAYFMQMQTRSADEPMTTFYRCCNEKCAHNWRD 109          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A024UTD8_9STRA (DNA-directed RNA polymerase subunit n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UTD8_9STRA)

HSP 1 Score: 137 bits (345), Expect = 4.830e-37
Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = 2
Query:  131 FCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
            FCPTCGNLLM +    G   RF CQTCPY++  K+ +K+    PL+RK  DD+LGG+ AW NVD+T+  CP C H +AYFMQ Q+RSADEP TTFY+C  CK  W++
Sbjct:    3 FCPTCGNLLMVEPDSDG--MRFCCQTCPYIY--KINQKVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHTKAYFMQIQIRSADEPSTTFYKCTGCKKQWND 105          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A1Y1IMC9_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMC9_KLENI)

HSP 1 Score: 135 bits (340), Expect = 2.940e-36
Identity = 65/109 (59.63%), Postives = 76/109 (69.72%), Query Frame = 2
Query:  131 FCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCS--CKNMWSE 451
            FCPTC NLL+ +G   G   R+ CQTCPYV+ IK   K  L  PL RK  DD+LGGE AW NVDKTEA CP C + +AYFMQ Q+RSADEPM+TFY+CC   C + W E
Sbjct:    3 FCPTCANLLLVEGGNMGE-LRYFCQTCPYVYTIKAKMKNKL--PLARKEVDDVLGGEEAWRNVDKTEATCPKCRYGEAYFMQIQIRSADEPMSTFYKCCKPECSHQWRE 108          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A836CB68_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB68_9STRA)

HSP 1 Score: 135 bits (340), Expect = 3.220e-36
Identity = 63/113 (55.75%), Postives = 74/113 (65.49%), Query Frame = 2
Query:  125 VFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMH----KQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
            + FCPTCGNLLM + +  GG QRF CQTCPYVH +  G K+T    L+RK  DD+LGG  AW+NVDK    C  C      K+AYF Q QLRSADEPMT FY+C  C   W+E
Sbjct:    1 MLFCPTCGNLLMVEAATRGG-QRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A6P8HU17_ACTTE (DNA-directed RNA polymerase subunit n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HU17_ACTTE)

HSP 1 Score: 134 bits (337), Expect = 7.990e-36
Identity = 62/110 (56.36%), Postives = 72/110 (65.45%), Query Frame = 2
Query:  122 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
            M+ FCPTC N+L+ +        RF CQTCPYV+ I   KKI+     K K  DD+LGG+ AW NVD TE  CP C H +AYFMQ Q RSADEPMTTFY+CC C N W E
Sbjct:    1 MLLFCPTCANVLIVEEGSGCSSYRFACQTCPYVYNIT--KKISNRKYPKLKEVDDVLGGKNAWENVDSTEERCPKCEHDRAYFMQIQTRSADEPMTTFYKCCKCGNRWKE 108          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A0L0H4Y6_SPIPD (DNA-directed RNA polymerase subunit n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H4Y6_SPIPD)

HSP 1 Score: 134 bits (336), Expect = 1.090e-35
Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 2
Query:  125 VFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
            ++FCP+C NLL+    ++G  Q F CQTCPYV   ++ K+IT  T  KRK  DD+LGG AAW NVD TEA CP C H +AYFMQ Q+RSADEPM+ F++CC C   W E
Sbjct:    1 MYFCPSCANLLLIAQGEAGTNQ-FVCQTCPYV--CRINKQITQKTHFKRKQVDDVLGGAAAWENVDSTEARCPRCEHGRAYFMQLQIRSADEPMSIFFKCCKCAEQWRE 106          
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A0G4I9C6_9ALVE (DNA-directed RNA polymerase subunit n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I9C6_9ALVE)

HSP 1 Score: 133 bits (335), Expect = 1.540e-35
Identity = 59/110 (53.64%), Postives = 75/110 (68.18%), Query Frame = 2
Query:  122 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
            M  FCPTC N+L+ D S      RF C+TCPY+   K+ KK+T  T ++ K  DD+LGG+ AW NV+KTEA+CP C ++ AYF Q Q+RSADEPMTTFY+C  C   W E
Sbjct:    1 MAVFCPTCANILLVDRSNEQ--LRFFCRTCPYI--FKVEKKVTSKTVMETKKADDVLGGKEAWANVEKTEAICPKCAYRMAYFRQLQIRSADEPMTTFYKCVQCSRQWRE 106          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0PIB0_CAFRO4.150e-3953.39DNA-directed RNA polymerase subunit n=2 Tax=Cafete... [more]
C1DZH6_MICCC9.500e-3857.14DNA-directed RNA polymerase subunit n=1 Tax=Microm... [more]
A7SWZ1_NEMVE2.580e-3756.36DNA-directed RNA polymerase subunit n=1 Tax=Nemato... [more]
A0A336L2C6_CULSO2.660e-3757.14DNA-directed RNA polymerase subunit n=1 Tax=Culico... [more]
A0A024UTD8_9STRA4.830e-3756.07DNA-directed RNA polymerase subunit n=8 Tax=Saprol... [more]
A0A1Y1IMC9_KLENI2.940e-3659.63DNA-directed RNA polymerase subunit n=1 Tax=Klebso... [more]
A0A836CB68_9STRA3.220e-3655.75DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A6P8HU17_ACTTE7.990e-3656.36DNA-directed RNA polymerase subunit n=1 Tax=Actini... [more]
A0A0L0H4Y6_SPIPD1.090e-3555.96DNA-directed RNA polymerase subunit n=2 Tax=Spizel... [more]
A0A0G4I9C6_9ALVE1.540e-3553.64DNA-directed RNA polymerase subunit n=1 Tax=Chrome... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6789contigP-wetherbeei_contig6789:1584..2534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog296587.XP_002499862.1
PFAMsRNA_POL_M_15KD,TFIIS_C
Model size951
Max annot lvl3041|Chlorophyta
KEGG rclassRC02795
KEGG koko:K03019
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.91e-42
EggNOG OGsCOG1594@1|root,KOG2906@2759|Eukaryota,37VR7@33090|Viridiplantae,34IBW@3041|Chlorophyta
Ec32 ortholog descriptionZinc finger, TFIIS-type
Ec32 orthologEc-12_008560.1
DescriptionDNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Cds size333
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.7065327-UTR-P-wetherbeei_contig6789:1583..20801683186937.7065327-UTR-P-wetherbeei_contig6789:1583..2080Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6789 1584..2080 -
1683186937.7378068-UTR-P-wetherbeei_contig6789:2413..25341683186937.7378068-UTR-P-wetherbeei_contig6789:2413..2534Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6789 2414..2534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.7237082-CDS-P-wetherbeei_contig6789:2080..24131683186937.7237082-CDS-P-wetherbeei_contig6789:2080..2413Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6789 2081..2413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6789.2.1prot_P-wetherbeei_contig6789.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6789 2081..2413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6789.2.1

>prot_P-wetherbeei_contig6789.2.1 ID=prot_P-wetherbeei_contig6789.2.1|Name=mRNA_P-wetherbeei_contig6789.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKR
KTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYR
CCSCKNMWSE*
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mRNA from alignment at P-wetherbeei_contig6789:1584..2534-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6789.2.1 ID=mRNA_P-wetherbeei_contig6789.2.1|Name=mRNA_P-wetherbeei_contig6789.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=951bp|location=Sequence derived from alignment at P-wetherbeei_contig6789:1584..2534- (Phaeothamnion wetherbeei SAG_119_79)
GCCTTTCTGCCTTCCATAGCTACGGACTTGTAAAATATATTTCCTTCGCG GGGATTCCTATAGATATTTTCCCCCCATGGAGTAACTGCCCGTGTGGAAG ACGCGGAGCATAGCCCACACCATGGTCTTCTTCTGCCCGACTTGCGGAAA CCTTCTCATGTTCGACGGCTCGAAGTCTGGAGGAGGACAACGCTTCGGCT GCCAGACCTGTCCCTACGTCCACGGGATCAAGATGGGCAAGAAAATCACC CTGGACACGCCGCTTAAGCGCAAAACCACCGACGATATTCTCGGAGGTGA AGCCGCTTGGATCAACGTGGATAAAACCGAGGCCGTCTGCCCTGCGTGTA TGCACAAGCAAGCGTACTTCATGCAGCGGCAGCTTCGTTCCGCGGACGAG CCCATGACGACCTTCTACCGCTGCTGCTCCTGCAAGAACATGTGGAGCGA GTGAGGCGTTCAGACAAACGGCGCTCAAACTCTACTCACGGCACCACTGA CCTCAGGTGCAAGCAGCGTATTCAGCCGATTTGCAGCGCTGAAACCTACC CCTCTGACAACCCTTCAACTTCTCAAGACCAAGACAGACCGGCGCTGGCG ACAATCGCTCTTCCCAGCGGCGCATTGATGACGATTCAGCTCCCGAGTGG ACACCGTCGTGGCACATCAGCCTGGATCGTGCCTGGTACTACGGCCAACG ATGGTGCTTGTTGCATTCGTCCGACTAGGCGGCGAAAGGCCCACAACCAA ACGATCAAGTGGAGCGAAAAGGGACGGAGCGAAGAAGTTATTATGGGCCC ACGTGATGTTCGTTAAGCACCGGTGTGCCGGCCACAGTGGCCGGCCACCA GCAGCATGGTGAAGATGAACCGTCGGCGGTCCAATAAGGCAGGGCCGGGC GCACACAATGGTGGCCGGAAGATTGTGAACAAATATACGCATGTTGACGA C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6789:1584..2534-

>mRNA_P-wetherbeei_contig6789.2.1 ID=mRNA_P-wetherbeei_contig6789.2.1|Name=mRNA_P-wetherbeei_contig6789.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig6789:1584..2534- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCTTCTTCTGCCCGACTTGCGGAAACCTTCTCATGTTCGACGGCTC
GAAGTCTGGAGGAGGACAACGCTTCGGCTGCCAGACCTGTCCCTACGTCC
ACGGGATCAAGATGGGCAAGAAAATCACCCTGGACACGCCGCTTAAGCGC
AAAACCACCGACGATATTCTCGGAGGTGAAGCCGCTTGGATCAACGTGGA
TAAAACCGAGGCCGTCTGCCCTGCGTGTATGCACAAGCAAGCGTACTTCA
TGCAGCGGCAGCTTCGTTCCGCGGACGAGCCCATGACGACCTTCTACCGC
TGCTGCTCCTGCAAGAACATGTGGAGCGAGTGA
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