mRNA_P-wetherbeei_contig6789.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A7S0PIB0_CAFRO (DNA-directed RNA polymerase subunit n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PIB0_CAFRO) HSP 1 Score: 143 bits (360), Expect = 4.150e-39 Identity = 63/118 (53.39%), Postives = 84/118 (71.19%), Query Frame = 2
Query: 98 KTRSIAHTMVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
+ R+ + FCPTCGN+L+ +G G G +F C TCPY+ + KIT L+RKT DD+LGG AAW NVD+T+A+CPAC H++AYFMQ Q+RSADEPMTTFY+C +C W++
Sbjct: 7 RGRAAGSRTMLFCPTCGNMLLIEG---GAGTKFFCTTCPYIQRVTT--KITKSITLERKTVDDVLGGAAAWENVDQTDALCPACGHRRAYFMQLQIRSADEPMTTFYKCVACSGRWND 119
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: C1DZH6_MICCC (DNA-directed RNA polymerase subunit n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZH6_MICCC) HSP 1 Score: 139 bits (350), Expect = 9.500e-38 Identity = 64/112 (57.14%), Postives = 75/112 (66.96%), Query Frame = 2
Query: 122 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLK--RKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
M+ FCP C N+L+ D GGG + CQTCPY H I T+ P+K RK DD+LGG+ AW NVDKT A CP C H QAYFMQ Q+RSADEPM+TFY+CC C N W E
Sbjct: 1 MLSFCPHCANMLLVDHCPEGGGLKLYCQTCPYEHAITE----TIRDPIKIARKQVDDVLGGDDAWKNVDKTSATCPKCDHGQAYFMQIQIRSADEPMSTFYKCCKCANQWRE 108
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A7SWZ1_NEMVE (DNA-directed RNA polymerase subunit n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SWZ1_NEMVE) HSP 1 Score: 138 bits (347), Expect = 2.580e-37 Identity = 62/110 (56.36%), Postives = 74/110 (67.27%), Query Frame = 2
Query: 122 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
M+ FCP+C N+L+ + RF CQTCPYVH I KK++ K K DD+LGG++AW NVD TE CP C H +AYFMQ Q RSADEPMTTFY+CCSC N W E
Sbjct: 1 MLLFCPSCANVLVVEEGTGPSAYRFACQTCPYVHNIA--KKVSSKKYPKLKEVDDVLGGKSAWENVDSTEERCPKCDHNRAYFMQIQTRSADEPMTTFYKCCSCGNRWKE 108
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A336L2C6_CULSO (DNA-directed RNA polymerase subunit n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336L2C6_CULSO) HSP 1 Score: 138 bits (347), Expect = 2.660e-37 Identity = 64/112 (57.14%), Postives = 79/112 (70.54%), Query Frame = 2
Query: 122 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCS--CKNMWSE 451
M+FFCPTCGNLL+ + +GG RF C TCPY+ ++ KKI+ T K K D ++GG AAW NVD T+A CP C HK+AYFMQ Q RSADEPMTTFYRCC+ C + W +
Sbjct: 1 MLFFCPTCGNLLLIEEDTTGG-NRFSCNTCPYI--CRINKKISYRTYPKLKEVDHVMGGSAAWENVDSTDAECPNCSHKRAYFMQMQTRSADEPMTTFYRCCNEKCAHNWRD 109
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A024UTD8_9STRA (DNA-directed RNA polymerase subunit n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UTD8_9STRA) HSP 1 Score: 137 bits (345), Expect = 4.830e-37 Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = 2
Query: 131 FCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
FCPTCGNLLM + G RF CQTCPY++ K+ +K+ PL+RK DD+LGG+ AW NVD+T+ CP C H +AYFMQ Q+RSADEP TTFY+C CK W++
Sbjct: 3 FCPTCGNLLMVEPDSDG--MRFCCQTCPYIY--KINQKVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHTKAYFMQIQIRSADEPSTTFYKCTGCKKQWND 105
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A1Y1IMC9_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMC9_KLENI) HSP 1 Score: 135 bits (340), Expect = 2.940e-36 Identity = 65/109 (59.63%), Postives = 76/109 (69.72%), Query Frame = 2
Query: 131 FCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCS--CKNMWSE 451
FCPTC NLL+ +G G R+ CQTCPYV+ IK K L PL RK DD+LGGE AW NVDKTEA CP C + +AYFMQ Q+RSADEPM+TFY+CC C + W E
Sbjct: 3 FCPTCANLLLVEGGNMGE-LRYFCQTCPYVYTIKAKMKNKL--PLARKEVDDVLGGEEAWRNVDKTEATCPKCRYGEAYFMQIQIRSADEPMSTFYKCCKPECSHQWRE 108
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A836CB68_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB68_9STRA) HSP 1 Score: 135 bits (340), Expect = 3.220e-36 Identity = 63/113 (55.75%), Postives = 74/113 (65.49%), Query Frame = 2
Query: 125 VFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMH----KQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
+ FCPTCGNLLM + + GG QRF CQTCPYVH + G K+T L+RK DD+LGG AW+NVDK C C K+AYF Q QLRSADEPMT FY+C C W+E
Sbjct: 1 MLFCPTCGNLLMVEAATRGG-QRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A6P8HU17_ACTTE (DNA-directed RNA polymerase subunit n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HU17_ACTTE) HSP 1 Score: 134 bits (337), Expect = 7.990e-36 Identity = 62/110 (56.36%), Postives = 72/110 (65.45%), Query Frame = 2
Query: 122 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
M+ FCPTC N+L+ + RF CQTCPYV+ I KKI+ K K DD+LGG+ AW NVD TE CP C H +AYFMQ Q RSADEPMTTFY+CC C N W E
Sbjct: 1 MLLFCPTCANVLIVEEGSGCSSYRFACQTCPYVYNIT--KKISNRKYPKLKEVDDVLGGKNAWENVDSTEERCPKCEHDRAYFMQIQTRSADEPMTTFYKCCKCGNRWKE 108
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A0L0H4Y6_SPIPD (DNA-directed RNA polymerase subunit n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H4Y6_SPIPD) HSP 1 Score: 134 bits (336), Expect = 1.090e-35 Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 2
Query: 125 VFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
++FCP+C NLL+ ++G Q F CQTCPYV ++ K+IT T KRK DD+LGG AAW NVD TEA CP C H +AYFMQ Q+RSADEPM+ F++CC C W E
Sbjct: 1 MYFCPSCANLLLIAQGEAGTNQ-FVCQTCPYV--CRINKQITQKTHFKRKQVDDVLGGAAAWENVDSTEARCPRCEHGRAYFMQLQIRSADEPMSIFFKCCKCAEQWRE 106
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Match: A0A0G4I9C6_9ALVE (DNA-directed RNA polymerase subunit n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I9C6_9ALVE) HSP 1 Score: 133 bits (335), Expect = 1.540e-35 Identity = 59/110 (53.64%), Postives = 75/110 (68.18%), Query Frame = 2
Query: 122 MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRKTTDDILGGEAAWINVDKTEAVCPACMHKQAYFMQRQLRSADEPMTTFYRCCSCKNMWSE 451
M FCPTC N+L+ D S RF C+TCPY+ K+ KK+T T ++ K DD+LGG+ AW NV+KTEA+CP C ++ AYF Q Q+RSADEPMTTFY+C C W E
Sbjct: 1 MAVFCPTCANILLVDRSNEQ--LRFFCRTCPYI--FKVEKKVTSKTVMETKKADDVLGGKEAWANVEKTEAICPKCAYRMAYFRQLQIRSADEPMTTFYKCVQCSRQWRE 106 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6789.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6789.2.1 >prot_P-wetherbeei_contig6789.2.1 ID=prot_P-wetherbeei_contig6789.2.1|Name=mRNA_P-wetherbeei_contig6789.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp MVFFCPTCGNLLMFDGSKSGGGQRFGCQTCPYVHGIKMGKKITLDTPLKRback to top mRNA from alignment at P-wetherbeei_contig6789:1584..2534- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6789.2.1 ID=mRNA_P-wetherbeei_contig6789.2.1|Name=mRNA_P-wetherbeei_contig6789.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=951bp|location=Sequence derived from alignment at P-wetherbeei_contig6789:1584..2534- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6789:1584..2534- >mRNA_P-wetherbeei_contig6789.2.1 ID=mRNA_P-wetherbeei_contig6789.2.1|Name=mRNA_P-wetherbeei_contig6789.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig6789:1584..2534- (Phaeothamnion wetherbeei SAG_119_79)back to top |