mRNA_P-wetherbeei_contig6787.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6787.1.1
Unique NamemRNA_P-wetherbeei_contig6787.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6787.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6787contigP-wetherbeei_contig6787:1943..3308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6087.XP_004207781.1
PFAMsDUF659,Dimer_Tnp_hAT
Model size1136
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.47e-07
EggNOG OGs2CU6P@1|root,2RJJK@2759|Eukaryota,3A09E@33154|Opisthokonta,3BPSP@33208|Metazoa
DescriptionProtein of unknown function (DUF 659)
Cds size486
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.504729-UTR-P-wetherbeei_contig6787:1942..25321683186937.504729-UTR-P-wetherbeei_contig6787:1942..2532Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6787 1943..2532 -
1683186937.5354722-UTR-P-wetherbeei_contig6787:3248..33081683186937.5354722-UTR-P-wetherbeei_contig6787:3248..3308Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6787 3249..3308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.5160916-CDS-P-wetherbeei_contig6787:2532..29751683186937.5160916-CDS-P-wetherbeei_contig6787:2532..2975Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6787 2533..2975 -
1683186937.5255997-CDS-P-wetherbeei_contig6787:3205..32481683186937.5255997-CDS-P-wetherbeei_contig6787:3205..3248Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6787 3206..3248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6787.1.1prot_P-wetherbeei_contig6787.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6787 2533..3248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6787.1.1

>prot_P-wetherbeei_contig6787.1.1 ID=prot_P-wetherbeei_contig6787.1.1|Name=mRNA_P-wetherbeei_contig6787.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
MDCSADSHTAAYNTELFAKAIDEIDPEKVAAICTDVAAAMTKGRRDLVSQ
PKYRHILDLRCQMHAFNLLYGSFFGHPVPKSIMRITEQIVMFVRASHKAG
ELVRQKAREMGKKVAAFKTSNKTRFTSGEAGLSSMAELEDVLQSIYVTRL
LSSSISRSSSL*
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mRNA from alignment at P-wetherbeei_contig6787:1943..3308-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6787.1.1 ID=mRNA_P-wetherbeei_contig6787.1.1|Name=mRNA_P-wetherbeei_contig6787.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1366bp|location=Sequence derived from alignment at P-wetherbeei_contig6787:1943..3308- (Phaeothamnion wetherbeei SAG_119_79)
AAGTCTGTCATCGCTGTGCTCGCCGTGACGGCACAGCGCAAGACCCACCT
GCTGGATGTGATGGATTGCTCTGCCGACAGTCATACCGCTGCATACAACA
CAGGTGAAATATCAAGACGCACTCCTCGCGAACGGGGCGCAGCACTTATT
TTTAATTTCTGCGAATGGGGGCGCGCACACTATCATTTGCCACTTGGGGC
GGTTAGCAGCACATCAGGAGGCATGTCTGTGTTCCTTTTGATAAATTCCT
TCCCCTCCCTTCCTCACGAAACGTGCCTTGCTTCAGCGCGCTGCTCATGC
ACCCGCCCTTTGCTGCCTGCTGCTGTTTTGCAGAGCTTTTCGCTAAGGCA
ATTGACGAGATCGACCCGGAAAAGGTTGCGGCCATTTGCACCGACGTTGC
GGCAGCCATGACTAAGGGCCGCCGGGATCTAGTGTCGCAGCCCAAGTACC
GCCACATCCTGGATCTCCGCTGCCAGATGCACGCCTTTAATCTGCTGTAC
GGCTCATTCTTCGGGCATCCCGTTCCCAAGAGCATCATGCGAATCACCGA
GCAGATCGTCATGTTTGTGCGTGCCTCGCACAAGGCCGGCGAGCTCGTGC
GCCAGAAAGCGAGGGAGATGGGCAAGAAGGTCGCTGCCTTCAAAACATCC
AACAAGACACGGTTCACCTCCGGTGAGGCGGGTCTTTCTTCCATGGCAGA
GCTCGAGGACGTGCTGCAGAGCATCTATGTGACGCGCCTGCTCTCTTCCA
GCATAAGCCGGAGCTCGTCGCTGTGATATCCGACCGCTGGCATGACTTCT
GGCGTCAGCTCCGTGAGGTTCTCAAGCTGCTGTTGCCCATTAGCAAGGTC
ATCATGATGGTGCAGTCCGATGAGTGCACGCTCACCGACATCACGCGCTT
CTGGCTCTACCTCGCGAAGGCCCTGGTGGGCGTTATGGCTGCGTCCAAGC
TAGCTGCTGAGTACATCTCGCACGCGGCGGCTCAGTACATTCGGCGCGTG
CAGGCCCTCCGCCTGGACCTGCACCGGCTGGCGCTCTTCCTAGATCCAAC
TCATAAGCTGGACGGCGCCGGTGGCGGCGATGAAACCAAGTTCAGGGCCG
TTGCTGATGCAGTAAGTGAGCTTGTTCCCCGCCGTCAATGCTTCGCCTGG
CGCCAGTTGTTCTAGCCAATGCCGTGGCGTGGCTATCTGCCTGCTTGTTT
CGTAGCTATTTTGCCAAGCCAATTATCGATTGCGGGCACGCACCCCCGCA
ACCAAGCAGGAATGAACTAATGTACAGCCAACGTATCCTCCTCTTTGAGG
GGCGGACACTTTCCTGGCGGCGGTGGGCACAAGATCGGCGCCAGCTAATT
TACAGCTCTGACAATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6787:1943..3308-

>mRNA_P-wetherbeei_contig6787.1.1 ID=mRNA_P-wetherbeei_contig6787.1.1|Name=mRNA_P-wetherbeei_contig6787.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig6787:1943..3308- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATTGCTCTGCCGACAGTCATACCGCTGCATACAACACAGAGCTTTT
CGCTAAGGCAATTGACGAGATCGACCCGGAAAAGGTTGCGGCCATTTGCA
CCGACGTTGCGGCAGCCATGACTAAGGGCCGCCGGGATCTAGTGTCGCAG
CCCAAGTACCGCCACATCCTGGATCTCCGCTGCCAGATGCACGCCTTTAA
TCTGCTGTACGGCTCATTCTTCGGGCATCCCGTTCCCAAGAGCATCATGC
GAATCACCGAGCAGATCGTCATGTTTGTGCGTGCCTCGCACAAGGCCGGC
GAGCTCGTGCGCCAGAAAGCGAGGGAGATGGGCAAGAAGGTCGCTGCCTT
CAAAACATCCAACAAGACACGGTTCACCTCCGGTGAGGCGGGTCTTTCTT
CCATGGCAGAGCTCGAGGACGTGCTGCAGAGCATCTATGTGACGCGCCTG
CTCTCTTCCAGCATAAGCCGGAGCTCGTCGCTGTGA
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