mRNA_P-wetherbeei_contig6785.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6785.2.1
Unique NamemRNA_P-wetherbeei_contig6785.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6785.2.1 vs. uniprot
Match: A0A7S0N887_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N887_9CHLO)

HSP 1 Score: 154 bits (388), Expect = 2.510e-38
Identity = 70/102 (68.63%), Postives = 76/102 (74.51%), Query Frame = 2 
Query:  329 RTVSKVERYPRLPVWPVQNGLFFFLLDLLRLTEWAHLLEQRFGGRVCPMALQAADADPFVLLAHHRHSFHPWDPIRPIFRFFLPEGFPAHPHRGFSTVTYVL 634
            R V KVE++ RLPVWPV  G+ F +LDLLRL E A  LE RFGGRVCPM       DPFVL  HHRHSF  WDP+RPIFR  LPEGFPAHPHRGF TVTY+L
Sbjct:   85 RRVEKVEKFARLPVWPVVPGVIFIILDLLRLNELAAFLEHRFGGRVCPMMFTPEQTDPFVLCVHHRHSFWWWDPVRPIFRLLLPEGFPAHPHRGFETVTYML 186
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BLAST of mRNA_P-wetherbeei_contig6785.2.1 vs. uniprot
Match: A0A7S0H265_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H265_9EUKA)

HSP 1 Score: 135 bits (340), Expect = 4.020e-32
Identity = 65/103 (63.11%), Postives = 71/103 (68.93%), Query Frame = 2 
Query:  329 RTVSKVERYPRLPVWPVQNGLFFFLLDLLRLTEWAHLLEQRFGGRVCPMALQAADADPFVLLAHHRHSFHPWDPIRPIFRFFLPEGFPAHPHRGFSTVTYVLK 637
            R V KV   PRLPVWPV NGL   LLD L     A  LE R GGRV PM L  +D +PFVLL HHRHSF  +DPIRP+    +PEGFPAHPHRGF T+TYVLK
Sbjct:   60 RRVDKVRTPPRLPVWPVTNGLGLLLLDALGQKGLARKLEDRIGGRVSPMILDYSDTNPFVLLVHHRHSFTKFDPIRPLSNLVIPEGFPAHPHRGFETITYVLK 162
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BLAST of mRNA_P-wetherbeei_contig6785.2.1 vs. uniprot
Match: A0A812J990_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812J990_9DINO)

HSP 1 Score: 139 bits (350), Expect = 1.220e-31
Identity = 65/103 (63.11%), Postives = 78/103 (75.73%), Query Frame = 2 
Query:  332 TVSKVERYPRLPVWPVQNGLFFFLLDLLRLTEWAHLLEQRFGGRVCPMALQ-AADADPFVLLAHHRHSFHPWDPIRPIFRFFLPEGFPAHPHRGFSTVTYVLK 637
            +V  +E+YPRLPVWP   GL + LLDLL   +    LE RFGGRVCPM L+  A +DPF+L+AHHRHSF+ +DP R +FR  LPEGFPAHPHRGF TVTYVL+
Sbjct:   54 SVESMEKYPRLPVWPAWFGLVYILLDLLGKPKVGAWLEDRFGGRVCPMVLRDKAASDPFLLVAHHRHSFNAFDPFRHLFRLLLPEGFPAHPHRGFETVTYVLR 156
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BLAST of mRNA_P-wetherbeei_contig6785.2.1 vs. uniprot
Match: A0A812XKZ7_SYMPI (PRN1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XKZ7_SYMPI)

HSP 1 Score: 133 bits (335), Expect = 8.400e-31
Identity = 64/107 (59.81%), Postives = 79/107 (73.83%), Query Frame = 2 
Query:  332 TVSKVERYPRLPVWPVQNGLFFFLLDLL----RLTEWAHLLEQRFGGRVCPMALQ-AADADPFVLLAHHRHSFHPWDPIRPIFRFFLPEGFPAHPHRGFSTVTYVLK 637
            +V  +E++PRLPVWP   G+ + LLDLL     +  W   LE RFGGRVCPM  +  A +DPF+L+AHHRHSF+ +DP R +FRF LPEGFPAHPHRGF TVTYVL+
Sbjct:   60 SVESMEKHPRLPVWPAWFGIVYILLDLLVGKPNVGAW---LEDRFGGRVCPMIFRDTAASDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVLR 163
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BLAST of mRNA_P-wetherbeei_contig6785.2.1 vs. uniprot
Match: A0A812LFT3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812LFT3_9DINO)

HSP 1 Score: 133 bits (334), Expect = 1.040e-30
Identity = 64/107 (59.81%), Postives = 79/107 (73.83%), Query Frame = 2 
Query:  332 TVSKVERYPRLPVWPVQNGLFFFLLDLLR----LTEWAHLLEQRFGGRVCPMALQAAD-ADPFVLLAHHRHSFHPWDPIRPIFRFFLPEGFPAHPHRGFSTVTYVLK 637
            +V K+E++PRLPVWP   G+ + LLDLL     +  W   LE RFGGRVCPM  +    +DPF+L+AHHRHSF+ +DP R +FRF LPEGFPAHPHRGF TVTYVL+
Sbjct:   58 SVEKMEKHPRLPVWPAWFGIVYILLDLLLGKPGVGAW---LEDRFGGRVCPMIFRDTSVSDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVLR 161
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BLAST of mRNA_P-wetherbeei_contig6785.2.1 vs. uniprot
Match: A0A812K4J3_9DINO (Hypothetical protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812K4J3_9DINO)

HSP 1 Score: 133 bits (334), Expect = 1.120e-30
Identity = 64/107 (59.81%), Postives = 79/107 (73.83%), Query Frame = 2 
Query:  332 TVSKVERYPRLPVWPVQNGLFFFLLDLL----RLTEWAHLLEQRFGGRVCPMALQ-AADADPFVLLAHHRHSFHPWDPIRPIFRFFLPEGFPAHPHRGFSTVTYVLK 637
            +V  +E++PRLPVWP   G+ + LLDLL     +  W   LE RFGGRVCPM  +  A +DPF+L+AHHRHSF+ +DP R +FRF LPEGFPAHPHRGF TVTYVL+
Sbjct:   59 SVENMEKHPRLPVWPAWFGIVYILLDLLLGRPSVGAW---LEDRFGGRVCPMIFRDTAASDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVLR 162
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BLAST of mRNA_P-wetherbeei_contig6785.2.1 vs. uniprot
Match: B8C643_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C643_THAPS)

HSP 1 Score: 132 bits (331), Expect = 2.540e-30
Identity = 62/103 (60.19%), Postives = 69/103 (66.99%), Query Frame = 2 
Query:  329 RTVSKVERYPRLPVWPVQNGLFFFLLDLLRLTEWAHLLEQRFGGRVCPMALQAADADPFVLLAHHRHSFHPWDPIRPIFRFFLPEGFPAHPHRGFSTVTYVLK 637
            R ++ VE++ RLPVWPV  G+F F L  +   E A  LE   GGRVCP    + D  PFVLL HHRHSF  WDPIR I R F PEGFPAHPHRGF TVTY LK
Sbjct:   71 RQIANVEKFARLPVWPVWQGVFLFFLSKIAGQEVAAKLEDVIGGRVCPNFFSSGDTSPFVLLVHHRHSFSSWDPIRYIQRTFFPEGFPAHPHRGFVTVTYCLK 173
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BLAST of mRNA_P-wetherbeei_contig6785.2.1 vs. uniprot
Match: A0A7S2FVY6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FVY6_9EUKA)

HSP 1 Score: 125 bits (314), Expect = 9.510e-30
Identity = 63/105 (60.00%), Postives = 69/105 (65.71%), Query Frame = 2 
Query:  344 VERYPRLPVWPVQNGLFFFLLDLLR--LTEWAHLLEQRFGGRVCPMALQAADADPFVLLAHHRHSFHPWDPIRPIFR-FFLPEGFPAHPHRGFSTVTYVLKVRSG 649
            V R+ RLPVWP   GL   +L  L      WA  LE  FGGRVCPM     DADPFVLL HHRHSF P D +RP+F    +PEGFPAHPHRGF TVTYVL  R+G
Sbjct:    3 VVRHTRLPVWPAWQGLPLVVLSQLPGPFRGWADRLEDAFGGRVCPMQFSPGDADPFVLLVHHRHSFRPLDFLRPLFSAVIMPEGFPAHPHRGFETVTYVLPGRAG 107
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BLAST of mRNA_P-wetherbeei_contig6785.2.1 vs. uniprot
Match: A0A1Q9DQN6_SYMMI (Putative ubiquitin-like-specific protease 1B n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DQN6_SYMMI)

HSP 1 Score: 133 bits (334), Expect = 1.900e-29
Identity = 64/107 (59.81%), Postives = 79/107 (73.83%), Query Frame = 2 
Query:  332 TVSKVERYPRLPVWPVQNGLFFFLLDLL----RLTEWAHLLEQRFGGRVCPMALQ-AADADPFVLLAHHRHSFHPWDPIRPIFRFFLPEGFPAHPHRGFSTVTYVLK 637
            +V  +E++PRLPVWP   G+ + LLDLL     +  W   LE RFGGRVCPM  +  A +DPF+L+AHHRHSF+ +DP R +FRF LPEGFPAHPHRGF TVTYVL+
Sbjct:  285 SVENMEKHPRLPVWPAWFGIVYILLDLLLGKPSVGAW---LEDRFGGRVCPMIFRDTAASDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVLR 388
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BLAST of mRNA_P-wetherbeei_contig6785.2.1 vs. uniprot
Match: A0A813BIS6_SYMMI (ULP1B protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813BIS6_SYMMI)

HSP 1 Score: 133 bits (334), Expect = 2.050e-29
Identity = 64/107 (59.81%), Postives = 79/107 (73.83%), Query Frame = 2 
Query:  332 TVSKVERYPRLPVWPVQNGLFFFLLDLL----RLTEWAHLLEQRFGGRVCPMALQ-AADADPFVLLAHHRHSFHPWDPIRPIFRFFLPEGFPAHPHRGFSTVTYVLK 637
            +V  +E++PRLPVWP   G+ + LLDLL     +  W   LE RFGGRVCPM  +  A +DPF+L+AHHRHSF+ +DP R +FRF LPEGFPAHPHRGF TVTYVL+
Sbjct: 1260 SVENMEKHPRLPVWPAWFGIVYILLDLLLGKPSVGAW---LEDRFGGRVCPMIFRDTAASDPFLLVAHHRHSFNAFDPFRYLFRFLLPEGFPAHPHRGFETVTYVLR 1363
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6785.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0N887_9CHLO2.510e-3868.63Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S0H265_9EUKA4.020e-3263.11Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A812J990_9DINO1.220e-3163.11Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A812XKZ7_SYMPI8.400e-3159.81PRN1 protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A812LFT3_9DINO1.040e-3059.81Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A812K4J3_9DINO1.120e-3059.81Hypothetical protein n=2 Tax=unclassified Symbiodi... [more]
B8C643_THAPS2.540e-3060.19Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2FVY6_9EUKA9.510e-3060.00Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A1Q9DQN6_SYMMI1.900e-2959.81Putative ubiquitin-like-specific protease 1B n=2 T... [more]
A0A813BIS6_SYMMI2.050e-2959.81ULP1B protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6785contigP-wetherbeei_contig6785:1813..3308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps6291
PFAMsPirin,Pirin_C
Model size1398
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons2
Evalue1.23e-33
EggNOG OGsCOG1741@1|root,2QQ5A@2759|Eukaryota,2XB0Q@2836|Bacillariophyta
Ec32 ortholog descriptionPirin
Ec32 orthologEc-11_004080.1
DescriptionPirin C-terminal cupin domain
Cds size645
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.4381597-UTR-P-wetherbeei_contig6785:1812..18371683186937.4381597-UTR-P-wetherbeei_contig6785:1812..1837Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6785 1813..1837 +
1683186937.477748-UTR-P-wetherbeei_contig6785:2580..33081683186937.477748-UTR-P-wetherbeei_contig6785:2580..3308Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6785 2581..3308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.4582217-CDS-P-wetherbeei_contig6785:1837..19121683186937.4582217-CDS-P-wetherbeei_contig6785:1837..1912Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6785 1838..1912 +
1683186937.469506-CDS-P-wetherbeei_contig6785:2010..25801683186937.469506-CDS-P-wetherbeei_contig6785:2010..2580Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6785 2011..2580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6785.2.1prot_P-wetherbeei_contig6785.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6785 1838..2580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6785.2.1

>prot_P-wetherbeei_contig6785.2.1 ID=prot_P-wetherbeei_contig6785.2.1|Name=mRNA_P-wetherbeei_contig6785.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=215bp
MVYLLCVLFFLGCPLLQGWSPNPTKVTTRPKATRQRRAGQPLPIWPVPAS
WTASNRPAPTMRSRRSRLSALLRLPRFRRSSRDRDEEKAERLRSAPREEP
CRTVSKVERYPRLPVWPVQNGLFFFLLDLLRLTEWAHLLEQRFGGRVCPM
ALQAADADPFVLLAHHRHSFHPWDPIRPIFRFFLPEGFPAHPHRGFSTVT
YVLKVRSGESVMCL*
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mRNA from alignment at P-wetherbeei_contig6785:1813..3308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6785.2.1 ID=mRNA_P-wetherbeei_contig6785.2.1|Name=mRNA_P-wetherbeei_contig6785.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1496bp|location=Sequence derived from alignment at P-wetherbeei_contig6785:1813..3308+ (Phaeothamnion wetherbeei SAG_119_79)
CCTCGACACACTCGTTTCGTCGAGGATGGTATACCTGCTGTGCGTTCTTT
TCTTCTTAGGATGCCCGCTTCTGCAAGGATGGAGTCCAAACCCGACGAAG
GTACGCGCGTCTTCTCCGCCTGTAGCGCGAAGGGCGCGACCTTTTGTTCA
ACACTATGACTCCTGACTCGAAACGCTCGATCACAAACCACTCCTCAGGT
AACGACGCGACCAAAGGCTACTAGGCAGCGGAGGGCAGGCCAGCCGCTGC
CGATATGGCCGGTCCCCGCCTCCTGGACTGCGTCGAACCGCCCGGCGCCC
ACAATGCGGTCGAGACGAAGTCGCCTCTCCGCGCTGTTGCGCTTGCCGCG
GTTTCGACGCAGCAGCCGCGACCGCGACGAGGAAAAGGCTGAGCGCTTGC
GGAGCGCCCCCCGCGAGGAGCCGTGCCGCACCGTCAGCAAAGTCGAGCGG
TATCCCCGGCTGCCCGTCTGGCCCGTCCAGAACGGCCTCTTCTTCTTCCT
TCTCGACCTGCTGCGGCTCACCGAGTGGGCGCACCTCCTCGAGCAGCGGT
TCGGCGGCCGCGTCTGCCCGATGGCGCTGCAGGCCGCCGACGCCGACCCG
TTTGTGCTGCTGGCACACCACCGCCACTCCTTCCACCCATGGGACCCGAT
CCGGCCCATCTTCCGTTTCTTCCTACCCGAGGGGTTTCCGGCGCACCCGC
ACCGCGGCTTTTCGACCGTCACCTACGTGCTCAAGGTGAGATCGGGGGAA
TCTGTTATGTGTTTGTAGTCAATGTTAGGCTTTTGGCGAGTCGGTAGTGT
GGCAGAGCAGGAAGAAAGGCTTTGCTTTCCCCTGGGATTGATTGCTTCTT
TTTCCTTCACTGCTTGACTCAAGATTCATCAGATTGGAAAAGCTGCGCGC
CTTTCATTTGTCATATTTTGGATGTGATATGTCTCTTTATTGCTTTCTCT
TTAAAGCTGCGCGCATGTCGTTTGTGATATTTTGGATGTGATATGTCTCT
TTTTTGCTTTCTCTTCGCTTTTTTCTCGGCAGTTCTCCTCGGTTGCAATC
TCATCCGCTGACACTGCTCGTCAGTTTGGCCGCAGCCACCATGGCTGTGC
CCGCCATCGCCGTCGCGATTGCCGCCCCTGCATGTCCATTCCTCTCTTTC
GTGACTTTCATCTATATCGGCTGCACAACCCCGCACCGCCACAGCCGCCG
CTGCTTCCTCCTCCATTCGCGCCGTTGCCGCTTTTGCCGCTGCCCCGCCG
CTCCTCCGCCGTCGCCGCCGCCACCATCCGCGCTTTGCCCTTCATCGCCG
CAATTGCAGGGCTCAATGACCCATCGAGACTCGATGGGCGTCAAGCAGAC
GTATGGCGACGGTGCCGTGCAGTGGCTGCGGGCAGGCCGAGGCATTCTCC
ACGAAGAAATGTGGGACGTGCCGCGCTGGGAGAGCACCAGCCTAGAACTC
TTCCAGCTCTGGGCCAACCTGCCGGTGGCGCTCAAAAGGTCCGAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6785:1813..3308+

>mRNA_P-wetherbeei_contig6785.2.1 ID=mRNA_P-wetherbeei_contig6785.2.1|Name=mRNA_P-wetherbeei_contig6785.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=645bp|location=Sequence derived from alignment at P-wetherbeei_contig6785:1813..3308+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTATACCTGCTGTGCGTTCTTTTCTTCTTAGGATGCCCGCTTCTGCA
AGGATGGAGTCCAAACCCGACGAAGGTAACGACGCGACCAAAGGCTACTA
GGCAGCGGAGGGCAGGCCAGCCGCTGCCGATATGGCCGGTCCCCGCCTCC
TGGACTGCGTCGAACCGCCCGGCGCCCACAATGCGGTCGAGACGAAGTCG
CCTCTCCGCGCTGTTGCGCTTGCCGCGGTTTCGACGCAGCAGCCGCGACC
GCGACGAGGAAAAGGCTGAGCGCTTGCGGAGCGCCCCCCGCGAGGAGCCG
TGCCGCACCGTCAGCAAAGTCGAGCGGTATCCCCGGCTGCCCGTCTGGCC
CGTCCAGAACGGCCTCTTCTTCTTCCTTCTCGACCTGCTGCGGCTCACCG
AGTGGGCGCACCTCCTCGAGCAGCGGTTCGGCGGCCGCGTCTGCCCGATG
GCGCTGCAGGCCGCCGACGCCGACCCGTTTGTGCTGCTGGCACACCACCG
CCACTCCTTCCACCCATGGGACCCGATCCGGCCCATCTTCCGTTTCTTCC
TACCCGAGGGGTTTCCGGCGCACCCGCACCGCGGCTTTTCGACCGTCACC
TACGTGCTCAAGGTGAGATCGGGGGAATCTGTTATGTGTTTGTAG
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