mRNA_P-wetherbeei_contig6785.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6785.1.1
Unique NamemRNA_P-wetherbeei_contig6785.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6785.1.1 vs. uniprot
Match: A0A835YPK2_9STRA (Squalene/phytoene synthase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPK2_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.410e-11
Identity = 41/75 (54.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:    1 VASVADGHMKSAQGAAEALPGDAFRALLPAVDAAWYLGALEAAGFDLFHPSLCRLPRSHLRQHWRLAAAVFGKKF 225
            VA VA GHM+  Q  A  L  DAFRALLP V AAWYL ALE AGF+ F  SL   PRS +   +R+A A    KF
Sbjct:  253 VACVAKGHMEQGQELASGLSNDAFRALLPGVRAAWYLEALEKAGFNAFDASLT--PRSWIPFQFRVARAAMTHKF 325
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6785.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YPK2_9STRA3.410e-1154.67Squalene/phytoene synthase-domain-containing prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6785contigP-wetherbeei_contig6785:424..651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size228
Hectar predicted targeting categoryother localisation
Exons1
Cds size204
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.3984118-UTR-P-wetherbeei_contig6785:423..4471683186937.3984118-UTR-P-wetherbeei_contig6785:423..447Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6785 424..447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.4090488-CDS-P-wetherbeei_contig6785:447..6511683186937.4090488-CDS-P-wetherbeei_contig6785:447..651Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6785 448..651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6785.1.1prot_P-wetherbeei_contig6785.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6785 448..651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6785.1.1

>prot_P-wetherbeei_contig6785.1.1 ID=prot_P-wetherbeei_contig6785.1.1|Name=mRNA_P-wetherbeei_contig6785.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
MKSAQGAAEALPGDAFRALLPAVDAAWYLGALEAAGFDLFHPSLCRLPRS
HLRQHWRLAAAVFGKKF*
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mRNA from alignment at P-wetherbeei_contig6785:424..651+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6785.1.1 ID=mRNA_P-wetherbeei_contig6785.1.1|Name=mRNA_P-wetherbeei_contig6785.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig6785:424..651+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGCGAGTGTGGCGGACGGGCACATGAAGTCCGCGCAGGGCGCGGCCGA
GGCGCTGCCGGGCGACGCGTTCCGGGCGCTGCTGCCGGCCGTCGACGCGG
CGTGGTACCTGGGGGCGCTCGAGGCGGCGGGCTTCGATCTGTTCCATCCG
TCGCTCTGCCGTCTGCCGCGCAGCCACCTCCGCCAGCACTGGCGCCTCGC
AGCAGCCGTCTTTGGAAAAAAGTTCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6785:424..651+

>mRNA_P-wetherbeei_contig6785.1.1 ID=mRNA_P-wetherbeei_contig6785.1.1|Name=mRNA_P-wetherbeei_contig6785.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig6785:424..651+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGTCCGCGCAGGGCGCGGCCGAGGCGCTGCCGGGCGACGCGTTCCG
GGCGCTGCTGCCGGCCGTCGACGCGGCGTGGTACCTGGGGGCGCTCGAGG
CGGCGGGCTTCGATCTGTTCCATCCGTCGCTCTGCCGTCTGCCGCGCAGC
CACCTCCGCCAGCACTGGCGCCTCGCAGCAGCCGTCTTTGGAAAAAAGTT
CTAA
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