mRNA_P-wetherbeei_contig6783.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6783.1.1
Unique NamemRNA_P-wetherbeei_contig6783.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6783.1.1 vs. uniprot
Match: A0A8J2STD5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2STD5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.730e-16
Identity = 46/115 (40.00%), Postives = 63/115 (54.78%), Query Frame = 1 
Query:    7 VVFPCAMVGDGVELRDRMTAFFVLSPSLIGSGPKGGSNSGGDHAAGQRFFGTYPVGQFRFLDGRPSLHLRNGDAVVPPPPAGGSEKANALAAGSPVLLAYRLDGGVEISVGGGPW 351
            V FP  +V   ++LRD +T FFVL+P+ +  G         D A GQRFFG YP+GQFRF D R +     GD             +  L +G+ ++ AYRLDG VE++V G P+
Sbjct:  113 VRFPAPLVASALQLRDGVTCFFVLTPAWLRDG---------DRAVGQRFFGHYPLGQFRFHDRRVAFRTAAGDV----------RHSKVLESGTKLVAAYRLDGRVEMAVDGAPF 208
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BLAST of mRNA_P-wetherbeei_contig6783.1.1 vs. uniprot
Match: A0A835ZD52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD52_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.330e-11
Identity = 40/108 (37.04%), Postives = 51/108 (47.22%), Query Frame = 1 
Query:   43 ELRDRMTAFFVLSPSLIGSGPKGGSNSGGDHAAGQRFFGTYPVGQFRFLDGRPSLHLRNGDAVVPPPPAGGSEKANALAAGSPVLLAYRLDGGVE-----ISVGGGPW 351
             + + MT FF L+P  IG GP         HA GQRFFGTYP GQ R +DG P++   + +             A  L A + V +AYR  G  +      SV G PW
Sbjct:  412 SMSEDMTLFFALAPGWIGRGP---------HAPGQRFFGTYPSGQLRLMDGHPAIKAESSEGAA----------AETLTANTLVTIAYRFSGAPQGGRAWASVNGKPW 500
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BLAST of mRNA_P-wetherbeei_contig6783.1.1 vs. uniprot
Match: A0A2R5GCI2_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCI2_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.050e-11
Identity = 45/113 (39.82%), Postives = 56/113 (49.56%), Query Frame = 1 
Query:    1 PVVVFPCAMVGDGVELRDRMTAFFVLSPSLIGSGPKGGSNSGGDHAAGQRFFGTYPVGQFRFLDGRPSLHLRNGDAVVPPPPAGGSEKANALAAGSPVLLAYRLDGGVEISVG 339
            P+V FPCA+    ++L D  T FFVL P              G  A GQRFFG YP GQFRF+D  PS +   GD  +       + K+   A    +LL YRL G   +SVG
Sbjct:  359 PLVEFPCALESSKLKLTDEATLFFVLRPEAF---------LFGQWARGQRFFGHYPHGQFRFVDASPSFYS-GGDRKL----QRHALKSEIRAQHGLILLKYRLAGKQGVSVG 457
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BLAST of mRNA_P-wetherbeei_contig6783.1.1 vs. uniprot
Match: A0A7S3LHH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LHH7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.030e-6
Identity = 42/118 (35.59%), Postives = 58/118 (49.15%), Query Frame = 1 
Query:    7 VVFPCAMVGDGVELRDR--MTAFFVLSPSLIGSGPKGGSNSGGDHAAGQRFFGTYPVGQFRFLDGRPSLHLRNGDAVVPPPPAGGSEKANA--LAAGSPVLLAYRLD-GGVEISVGGG 345
            + FPC++   G +L D   +T FF + P  +  G            AGQRFFG YP GQFRF    PS+  R GD ++       +EK +   L     ++L YR+D  GV+I V  G
Sbjct:  311 IKFPCSLESRGSQLPDDTPLTLFFAVQPEELKLGVT---------VAGQRFFGHYPNGQFRFSHSSPSIFSR-GDQMLQHLHRKIAEKKDYHHLEDNEFIILKYRIDDNGVQIGVNDG 418
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6783.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A8J2STD5_9STRA5.730e-1640.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835ZD52_9STRA2.330e-1137.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2R5GCI2_9STRA6.050e-1139.82Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A7S3LHH7_9STRA4.030e-635.59Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6783contigP-wetherbeei_contig6783:2862..3212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo158364
Model size351
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.3e-09
EggNOG OGs2C6UA@1|root,2S30Y@2759|Eukaryota,3QDRH@4776|Peronosporales
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.3368018-UTR-P-wetherbeei_contig6783:2861..28851683186937.3368018-UTR-P-wetherbeei_contig6783:2861..2885Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6783 2862..2885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.3571312-CDS-P-wetherbeei_contig6783:2885..32121683186937.3571312-CDS-P-wetherbeei_contig6783:2885..3212Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6783 2886..3212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6783.1.1prot_P-wetherbeei_contig6783.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6783 2886..3212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6783.1.1

>prot_P-wetherbeei_contig6783.1.1 ID=prot_P-wetherbeei_contig6783.1.1|Name=mRNA_P-wetherbeei_contig6783.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MVGDGVELRDRMTAFFVLSPSLIGSGPKGGSNSGGDHAAGQRFFGTYPVG
QFRFLDGRPSLHLRNGDAVVPPPPAGGSEKANALAAGSPVLLAYRLDGGV
EISVGGGPW
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mRNA from alignment at P-wetherbeei_contig6783:2862..3212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6783.1.1 ID=mRNA_P-wetherbeei_contig6783.1.1|Name=mRNA_P-wetherbeei_contig6783.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig6783:2862..3212+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGTGGTGGTGTTCCCGTGCGCCATGGTTGGAGACGGCGTGGAATTGCG
CGACCGTATGACAGCCTTCTTTGTGCTTTCACCGTCCCTAATCGGCTCGG
GCCCCAAAGGCGGCTCCAACAGCGGCGGCGACCACGCGGCGGGGCAGCGC
TTTTTCGGCACGTATCCGGTCGGTCAGTTCCGCTTCCTCGACGGCCGACC
GTCCCTGCACCTCCGCAACGGCGACGCCGTGGTACCGCCGCCACCTGCGG
GCGGTAGCGAAAAGGCGAACGCGCTTGCGGCGGGAAGCCCGGTGCTACTG
GCTTACCGCCTCGACGGCGGTGTTGAAATATCTGTGGGCGGCGGCCCCTG
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6783:2862..3212+

>mRNA_P-wetherbeei_contig6783.1.1 ID=mRNA_P-wetherbeei_contig6783.1.1|Name=mRNA_P-wetherbeei_contig6783.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig6783:2862..3212+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTGGAGACGGCGTGGAATTGCGCGACCGTATGACAGCCTTCTTTGT
GCTTTCACCGTCCCTAATCGGCTCGGGCCCCAAAGGCGGCTCCAACAGCG
GCGGCGACCACGCGGCGGGGCAGCGCTTTTTCGGCACGTATCCGGTCGGT
CAGTTCCGCTTCCTCGACGGCCGACCGTCCCTGCACCTCCGCAACGGCGA
CGCCGTGGTACCGCCGCCACCTGCGGGCGGTAGCGAAAAGGCGAACGCGC
TTGCGGCGGGAAGCCCGGTGCTACTGGCTTACCGCCTCGACGGCGGTGTT
GAAATATCTGTGGGCGGCGGCCCCTGG
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