mRNA_P-wetherbeei_contig6773.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6773.2.1
Unique NamemRNA_P-wetherbeei_contig6773.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6773.2.1 vs. uniprot
Match: A0A835Z3K6_9STRA (Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K6_9STRA)

HSP 1 Score: 195 bits (495), Expect = 2.400e-57
Identity = 85/140 (60.71%), Postives = 111/140 (79.29%), Query Frame = 2
Query:  404 LYEEASRYADPRAVATECIIEVTSEEHFDHIVGKAAGGDPAHDGYVDGRGQKRQPHALIVVEVYANWCRACIGLRPKLLKLCAVHPEVLCCKINKSDQGALADRLGVKGLPTLILYKGGRRVDHFTTADRDTIEEAIADN 823
            +YEE+S+YADP AVAT+C++E+TS EH D I+  AA  +    GYVD  G +R PH LI+++V+ANWCRACIG+RPKLLKLCA HPEVLCCK+NK +   +A RLG++ LPT +LYK G+R+DHFTTAD +TIE+ + DN
Sbjct:    1 MYEESSKYADPHAVATDCVVEITSNEHLDRILATAAQVENPDAGYVDHHGNQRLPHRLIMIQVHANWCRACIGVRPKLLKLCARHPEVLCCKLNKGNHEDVAARLGIRALPTFVLYKNGKRIDHFTTADIETIEQGVLDN 140          
BLAST of mRNA_P-wetherbeei_contig6773.2.1 vs. uniprot
Match: D7G6A7_ECTSI (Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A7_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 1.970e-53
Identity = 95/155 (61.29%), Postives = 115/155 (74.19%), Query Frame = 2
Query:  380 ASSSSGA------TLYEEASRYADPRAVATECIIEVTSEEHFDHIVGKAAGGDPAHDGYVDGRGQKRQPHALIVVEVYANWCRACIGLRPKLLKLCAVHPEVLCCKINKSDQGALADRLGVKGLPTLILYKGGRRVDHFTTADRDTIEEAIADNT 826
            ASS+SGA      TLYEE SRYAD R+VA E I E+TS EHF+ +V +AAG D  H+GY D +G  R PH L++V+++A WCR C GL+PKLLKL   HPEVLCCKINK+    LA +LGV+GLP LI YK G+RVDH TTA+ +TIEEAI DNT
Sbjct:   13 ASSASGAADTAKVTLYEEFSRYADRRSVAQEVIFEITSAEHFEDVVSRAAGADE-HEGYEDAQGNWRVPHKLMMVQIHAGWCRVCKGLQPKLLKLITKHPEVLCCKINKAHHEELAAKLGVRGLPMLIFYKNGKRVDHHTTANINTIEEAIRDNT 166          
BLAST of mRNA_P-wetherbeei_contig6773.2.1 vs. uniprot
Match: A0A7R9U8D8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8D8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.010e-29
Identity = 58/139 (41.73%), Postives = 84/139 (60.43%), Query Frame = 2
Query:  407 YEEASRYADPRAVATECIIEVTSEEHFDHIVGKAAGGDPAHDGYVDGRGQKRQPHALIVVEVYANWCRACIGLRPKLLKLCAVHPEVLCCKINKSDQGALADRLGVKGLPTLILYKGGRRVDHFTTADRDTIEEAIADN 823
            YEE S YAD  A A E +I+VTS+E FD I+  AAG +P            ++PH ++++ V+A WCR C  L  + LK+   HPEVLC K+N +    +   LG++G+P  I+YK G+R+DHF   + D +EE + DN
Sbjct:   75 YEECSFYADATACAMETLIDVTSQEQFDFIISHAAGANPLSP--------DQKPHKMVMLMVHATWCRKCKYLMKQYLKVAKAHPEVLCLKLNLATNAEVGKSLGIRGVPLFIIYKAGKRIDHFYAENADDLEEQVEDN 205          
BLAST of mRNA_P-wetherbeei_contig6773.2.1 vs. uniprot
Match: A0A1X6NMX5_PORUM (Thioredoxin domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NMX5_PORUM)

HSP 1 Score: 87.8 bits (216), Expect = 1.910e-16
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  455 CIIEVTSEEHFDHIVGKAAGGDPAHDGYVDGRGQKRQPHALIVVEVYANWCRACIGLRPKLLKLCAVHPEVLCCKINKSDQGALADRLGVKGLPTLILYKGGRRVDHFTTADRDTIEEAIADN 823
            C+ ++T+    D ++ +A+   P  DG        R P  L+V+EVYA  CRAC G+     ++C VH E +    N      L  RLGV+G PT +L++GG R+DHF   DRD +EE +  N
Sbjct:   86 CVRQITTAAELDAVLSEAS--VPRADG-------GRPP--LVVLEVYATHCRACKGIARAFTRVCEVHREAIFLASNADVDDELMRRLGVRGTPTFVLFRGGVRIDHFYAKDRDALEEQVTQN 197          
BLAST of mRNA_P-wetherbeei_contig6773.2.1 vs. uniprot
Match: A0A7S2TY62_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TY62_9EUKA)

HSP 1 Score: 82.8 bits (203), Expect = 1.560e-14
Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  452 ECIIEVTSEEHFDHIVGKAAGGDPAHDGYVDGRGQKRQPHALIVVEVYANWCRACIGLRPKLLKLCAVHPEVLCCKIN-KSDQGALADRLGVKGLPTLILYKGGRRVDHFTTADRDTIEEAIADN 823
            +C+ EVTS + F+ I+          + Y D          LI++E+YA+WCR C  + PK  K C V P+V+  ++N K D G +   LG +GLP+ +L+K G+RVD F    R+ I E I DN
Sbjct:  107 DCVTEVTSVKMFEEIL----------EFYKDS-------DTLIILELYADWCRKCKFMLPKFDKECEVQPDVMFIRMNTKVDLGYIQKTLGPRGLPSFMLFKHGQRVDAFYANSREIISEYIQDN 214          
BLAST of mRNA_P-wetherbeei_contig6773.2.1 vs. uniprot
Match: A0A6U4NA76_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4NA76_HEMAN)

HSP 1 Score: 76.6 bits (187), Expect = 3.430e-12
Identity = 32/92 (34.78%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  548 RGQKRQPHALIVVEVYANWCRACIGLRPKLLKLCAVHP-EVLCCKINKSDQGALADRLGVKGLPTLILYKGGRRVDHFTTADRDTIEEAIAD 820
            RG++     ++++EVYANWCR C+ +  ++ + C  +  E +  K++      L+ +LGV+G+PT I+YK G R+DHF   +R+ + E + D
Sbjct:  149 RGKEVGKKRIVILEVYANWCRKCLKMSKEVFRACNQYQNEAIFLKMDAKACPDLSKKLGVRGMPTFIVYKDGERIDHFNAGNREDLNEHLED 240          
BLAST of mRNA_P-wetherbeei_contig6773.2.1 vs. uniprot
Match: A0A7S0T4X2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T4X2_9RHOD)

HSP 1 Score: 74.7 bits (182), Expect = 4.720e-12
Identity = 31/84 (36.90%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  575 LIVVEVYANWCRACIGLRPKLLKLCAV-HPEVLCCKINKSDQGALADRLGVKGLPTLILYKGGRRVDHFTTADRDTIEEAIADN 823
            L++V+V A WCRAC  +     ++     P++ C  ++  +   +   LG++ LPT +LYK G+R+DHF+  D DT+EE + DN
Sbjct:   94 LVMVKVAAKWCRACKKVERPFARVAEKWDPQLKCAAVDYQESPDIVVELGIRSLPTFVLYKNGQRIDHFSARDADTLEEHVLDN 177          
BLAST of mRNA_P-wetherbeei_contig6773.2.1 vs. uniprot
Match: A0A7S2V7D3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7D3_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.280e-11
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  557 KRQPHALIVVEVYANWCRACIGLRPKLLKLCAVHPEVLCCKINKSDQGALADRLGVKGLPTLILYKGGRRVDHFTTADRDTIEEAIADN 823
            K   +  +VV+VY+  CRAC  +  + +K+   +P +L  KIN      L+ +LGV+G+PT I+Y  G RVDHF    RD +EE I  N
Sbjct:   78 KSGQYDAVVVKVYSESCRACKFMTAQFVKVLEENPNILGLKINGGMYPELSKKLGVRGVPTFIMYINGERVDHFYAKTRDALEENIEVN 166          
BLAST of mRNA_P-wetherbeei_contig6773.2.1 vs. uniprot
Match: A0A7S1EU93_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EU93_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 2.770e-10
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  572 ALIVVEVYANWCRACIGLRPKLLKLCAVHPE-VLCCKINKSDQGALADRLGVKGLPTLILYKGGRRVDHFTTADRDTIEEAIAD 820
            +  +V+V A WCRAC  +     K+   + E + C +IN  +  AL   LG++ LPT I+Y+ G+R+DHF   + ++++E I D
Sbjct:   17 SFTLVKVSAPWCRACKSMIRPYEKISREYSEEIQCLEINVEESDALMQSLGIRSLPTFIIYRHGKRIDHFNAKNHESLKEHILD 100          
BLAST of mRNA_P-wetherbeei_contig6773.2.1 vs. uniprot
Match: A0A4U7CUW3_9EURY (Thioredoxin n=10 Tax=Halorubrum TaxID=56688 RepID=A0A4U7CUW3_9EURY)

HSP 1 Score: 68.2 bits (165), Expect = 6.320e-10
Identity = 37/109 (33.94%), Postives = 57/109 (52.29%), Query Frame = 2
Query:  500 GKAAGGDPAHDGYVDGRGQKRQPHALIVVEVYANWCRACIGLRPKLLKLCAVHPEVLCCKINKSDQGALADRLGVKGLPTLILYKGGRRVDHFTTA-DRDTIEEAIADN 823
            G A   +P H    D   +    H +++V+ YA+WC  C  + P +  L A   +    K++     A+A +LG + +PTL+LY  G  VD F  A DR T+E AIA++
Sbjct:   53 GAATPSEPIHVNGTDELRRAVDEHDVVLVDCYADWCGPCQMMEPAIEAL-AAETDAAVAKVDVDANQAVAQQLGARSIPTLVLYADGEAVDRFVGAQDRATLESAIAEH 160          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6773.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3K6_9STRA2.400e-5760.71Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 R... [more]
D7G6A7_ECTSI1.970e-5361.29Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A7R9U8D8_9STRA1.010e-2941.73Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1X6NMX5_PORUM1.910e-1637.40Thioredoxin domain-containing protein n=1 Tax=Porp... [more]
A0A7S2TY62_9EUKA1.560e-1437.60Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A6U4NA76_HEMAN3.430e-1234.78Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0T4X2_9RHOD4.720e-1236.90Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A7S2V7D3_9STRA1.280e-1140.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1EU93_9RHOD2.770e-1035.71Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A4U7CUW3_9EURY6.320e-1033.94Thioredoxin n=10 Tax=Halorubrum TaxID=56688 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6773contigP-wetherbeei_contig6773:988..2368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6A7
PFAMsTPR_16,Thioredoxin
Model size1381
Max annot lvl2759|Eukaryota
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categorychloroplast
Exons1
Evalue6.01e-57
EggNOG OGsKOG0908@1|root,KOG0908@2759|Eukaryota
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-10_001160.1
Descriptionprotein-disulfide reductase activity
Cds size756
COG categoryS
BRITEko00000,ko00001,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186936.6171906-UTR-P-wetherbeei_contig6773:987..10601683186936.6171906-UTR-P-wetherbeei_contig6773:987..1060Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6773 988..1060 +
1683186936.6417847-UTR-P-wetherbeei_contig6773:1816..23681683186936.6417847-UTR-P-wetherbeei_contig6773:1816..2368Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6773 1817..2368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186936.631825-CDS-P-wetherbeei_contig6773:1060..18161683186936.631825-CDS-P-wetherbeei_contig6773:1060..1816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6773 1061..1816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6773.2.1prot_P-wetherbeei_contig6773.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6773 1061..1816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6773.2.1

>prot_P-wetherbeei_contig6773.2.1 ID=prot_P-wetherbeei_contig6773.2.1|Name=mRNA_P-wetherbeei_contig6773.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=252bp
MGRSAAAAATTVLVMAAAATVTPRCRAFAPLELVSSQTLAPWRRTGARRV
ALTAEMSDVEREGGPGSSVSMAAPRSLSSARAGPSPPTTSDPQPPAEAAP
AGASSSSGATLYEEASRYADPRAVATECIIEVTSEEHFDHIVGKAAGGDP
AHDGYVDGRGQKRQPHALIVVEVYANWCRACIGLRPKLLKLCAVHPEVLC
CKINKSDQGALADRLGVKGLPTLILYKGGRRVDHFTTADRDTIEEAIADN
T*
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mRNA from alignment at P-wetherbeei_contig6773:988..2368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6773.2.1 ID=mRNA_P-wetherbeei_contig6773.2.1|Name=mRNA_P-wetherbeei_contig6773.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1381bp|location=Sequence derived from alignment at P-wetherbeei_contig6773:988..2368+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGAGCCCCCGCGGCAGCGCAAGTGTTGTGGTGGATGCACAAAGAGAAG AGAAAGGAAGAAACACAGGACGGATGGGCCGATCAGCAGCAGCAGCAGCC ACGACGGTGCTCGTAATGGCGGCGGCAGCCACCGTCACGCCGCGATGCAG GGCATTTGCACCGTTGGAGCTCGTTTCATCGCAAACTTTGGCTCCTTGGA GGAGGACAGGAGCGAGAAGAGTGGCGCTCACCGCTGAGATGTCAGACGTC GAGCGCGAAGGAGGCCCCGGCAGCAGCGTCTCCATGGCGGCGCCGCGGTC GTTGTCGTCTGCGCGAGCCGGCCCGAGCCCTCCGACGACTAGCGATCCTC AGCCCCCCGCAGAAGCTGCACCGGCTGGGGCCTCTTCTTCGTCGGGCGCC ACGCTTTACGAAGAGGCCTCCCGATACGCAGATCCTCGCGCCGTGGCCAC GGAATGCATCATCGAAGTCACTTCGGAAGAGCACTTCGACCACATCGTCG GCAAGGCCGCCGGCGGGGATCCGGCGCACGACGGTTACGTCGACGGGCGC GGCCAGAAGCGGCAGCCGCACGCGCTCATTGTCGTCGAGGTGTACGCGAA TTGGTGCCGCGCCTGCATCGGCCTCCGACCAAAGCTGCTGAAGCTGTGCG CTGTGCACCCGGAGGTGCTGTGCTGCAAGATCAACAAGAGCGACCAAGGC GCGCTCGCCGACCGCCTCGGCGTGAAAGGGCTGCCGACGCTCATCCTCTA CAAGGGCGGCCGCCGCGTCGACCACTTCACGACGGCCGACCGCGACACGA TCGAGGAAGCCATCGCCGACAACACGTGAGAAGAGAAAGCTGTGCCGGAG CACGCACGCCAAGAACTGTGCTGCGCAACCGGCGCCGAATGCCACGAGCG ACATGCCGTGACGGGCCGGCCAGGAGTGCTCGCCACTGCTGAGCGATGAA ATGCCGCCGAGATGTGCCGGTTTAGCGCAGTAGCAAACGAGCCGCGCGAG CGCGCTCTTTACTTCTCGCTGGTCAGCGATGGACCGGCTTTTTGTCCTTT CCACACGACTCAAACATTTGACCAAGAAATTAAAAAGATGAGGAGGGCGA GCGCGGCGTCACGACTCGTGGCGCACGGGAGAGGCCGGGCAAGCGGTGCT AGACAGCGTTGCCGGCGGCCTTGAGGTTTAAAGGGGGCGTTTGGAACGGA AGAGGAAAGAGATGAACGGGCGGACGGTCGGACGCCGGAATGCCTGGTAC CCACGCCGCCACGGCGACGGCGATGTGACGGAAGGAGCCACGTGGCGGGC CTAGCTCTTCAGGAAGCCAATAATATCCCACATGATGGGCAACGAGAATT TTCTCGTTCGCCGTGGATCGAGCCACCCCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6773:988..2368+

>mRNA_P-wetherbeei_contig6773.2.1 ID=mRNA_P-wetherbeei_contig6773.2.1|Name=mRNA_P-wetherbeei_contig6773.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig6773:988..2368+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCGATCAGCAGCAGCAGCAGCCACGACGGTGCTCGTAATGGCGGC
GGCAGCCACCGTCACGCCGCGATGCAGGGCATTTGCACCGTTGGAGCTCG
TTTCATCGCAAACTTTGGCTCCTTGGAGGAGGACAGGAGCGAGAAGAGTG
GCGCTCACCGCTGAGATGTCAGACGTCGAGCGCGAAGGAGGCCCCGGCAG
CAGCGTCTCCATGGCGGCGCCGCGGTCGTTGTCGTCTGCGCGAGCCGGCC
CGAGCCCTCCGACGACTAGCGATCCTCAGCCCCCCGCAGAAGCTGCACCG
GCTGGGGCCTCTTCTTCGTCGGGCGCCACGCTTTACGAAGAGGCCTCCCG
ATACGCAGATCCTCGCGCCGTGGCCACGGAATGCATCATCGAAGTCACTT
CGGAAGAGCACTTCGACCACATCGTCGGCAAGGCCGCCGGCGGGGATCCG
GCGCACGACGGTTACGTCGACGGGCGCGGCCAGAAGCGGCAGCCGCACGC
GCTCATTGTCGTCGAGGTGTACGCGAATTGGTGCCGCGCCTGCATCGGCC
TCCGACCAAAGCTGCTGAAGCTGTGCGCTGTGCACCCGGAGGTGCTGTGC
TGCAAGATCAACAAGAGCGACCAAGGCGCGCTCGCCGACCGCCTCGGCGT
GAAAGGGCTGCCGACGCTCATCCTCTACAAGGGCGGCCGCCGCGTCGACC
ACTTCACGACGGCCGACCGCGACACGATCGAGGAAGCCATCGCCGACAAC
ACGTGA
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