mRNA_P-wetherbeei_contig677.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig677.2.1
Unique NamemRNA_P-wetherbeei_contig677.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig677.2.1 vs. uniprot
Match: D7FZ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ76_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 2.680e-46
Identity = 85/127 (66.93%), Postives = 101/127 (79.53%), Query Frame = 1
Query:    1 MVRVDVCYFCSGPIYPGHGMHFVRNDSKDTTFDFEKLRNRPIKYDRELMGKTLRAVKKAK-VQKKREQRFFEMRHKDRAAKEKAEIREQISQNIELIAPAAA-DREKTLVNVRERAKVAVAARAARA 375
            MVR+++CYFCS  IYPGHG+ F RNDSKDTTFDFEK RNRP+KYDRE MGKTL A+KK K VQ KRE+RFFE RHK   AKEKA I+ +I  NIEL+APAAA DREKTL  + ++AK   +A A++A
Sbjct:    1 MVRIEICYFCSSRIYPGHGIVFARNDSKDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQKASAAASKA 127          
BLAST of mRNA_P-wetherbeei_contig677.2.1 vs. uniprot
Match: A0A835Z8F8_9STRA (RL30, ribosomal protein 30 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F8_9STRA)

HSP 1 Score: 151 bits (381), Expect = 3.630e-44
Identity = 84/151 (55.63%), Postives = 101/151 (66.89%), Query Frame = 1
Query:    1 MVRVDVCYFCSGPIYPGHGMHFVRNDSK--------------------------------------DTTFDFEKLRNRPIKYDRELMGKTLRAVKKA-KVQKKREQRFFEMRHKDRAAKEKAEIREQISQNIELIAPAAADREKTLVNVRE 336
            MVRV+VCYFCSGP+YPGHG+ FVRND+K                                      DTTFDFEK RNRP+KYDRELMGKTL A+KK  +VQ +RE+RFF++RHKD+AA+EKA IR ++ QNIEL+ PAAADREK L NV+E
Sbjct:    1 MVRVEVCYFCSGPMYPGHGVQFVRNDAKVFKFCRSKCHKNFIKKRNPRKMKWTKAYRKAAGKEMTVDTTFDFEKRRNRPVKYDRELMGKTLLAMKKVTEVQAQREKRFFDVRHKDKAAREKAAIRTEVEQNIELLVPAAADREKALANVKE 151          
BLAST of mRNA_P-wetherbeei_contig677.2.1 vs. uniprot
Match: A0A6H5KA78_9PHAE (TRASH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA78_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.350e-38
Identity = 85/165 (51.52%), Postives = 101/165 (61.21%), Query Frame = 1
Query:    1 MVRVDVCYFCSGPIYPGHGMHFVRNDSK--------------------------------------DTTFDFEKLRNRPIKYDRELMGKTLRAVKKAK-VQKKREQRFFEMRHKDRAAKEKAEIREQISQNIELIAPAAA-DREKTLVNVRERAKVAVAARAARA 375
            MVR+++CYFCS  IYPGHG+ F RNDSK                                      DTTFDFEK RNRP+KYDRE MGKTL A+KK K VQ KRE+RFFE RHK   AKEKA I+ +I  NIEL+APAAA DREKTL  + ++AK   +A A++A
Sbjct:    1 MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQKASAAASKA 165          
BLAST of mRNA_P-wetherbeei_contig677.2.1 vs. uniprot
Match: A0A7S3DS96_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DS96_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.220e-32
Identity = 72/159 (45.28%), Postives = 94/159 (59.12%), Query Frame = 1
Query:    4 VRVDVCYFCSGPIYPGHGMHFVRNDSK--------------------------------------DTTFDFEKLRNRPIKYDRELMGKTLRAVKKAK-VQKKREQRFFEMRHKDRAAKEKAEIREQISQNIELIAPAAADREKTLVNVRERAKVAVAAR 363
            +R++ CYFCS P YPGHGM FVRNDSK                                      D TF+FEK RNRP+KY+RELMGKTL+A+KK K +Q  RE RFF+ R KD A ++K + R +I ++IEL+APA A RE+ + NV + A+  +AAR
Sbjct:    1 MRIEKCYFCSSPCYPGHGMVFVRNDSKQFRFCRSKCIRNFHKKRNPRKVAWTKTYRKTAGKEMAVDATFEFEKRRNRPVKYNRELMGKTLQAMKKVKDIQNAREDRFFQARMKDAAVEKKQQARVEIEKSIELLAPAVASREQVMRNVVDSARARIAAR 159          
BLAST of mRNA_P-wetherbeei_contig677.2.1 vs. uniprot
Match: A0A1E7FH63_9STRA (60S ribosomal protein L24 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH63_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.550e-32
Identity = 71/159 (44.65%), Postives = 97/159 (61.01%), Query Frame = 1
Query:    4 VRVDVCYFCSGPIYPGHGMHFVRNDSK--------------------------------------DTTFDFEKLRNRPIKYDRELMGKTLRAVKKAK-VQKKREQRFFEMRHKDRAAKEKAEIREQISQNIELIAPAAADREKTLVNVRERAKVAVAAR 363
            +R++ CYFCS P YPGHGM FVRNDSK                                      D+TFDFEK RNRP+KYDR+LMGKT+ A+K+ + ++K RE+RFFE R  D  A++K + R +I ++IEL+APA A+RE+ + NV + AK+ +AAR
Sbjct:    1 MRIEKCYFCSSPCYPGHGMTFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMKRVETIKKAREERFFENRMSDAKAEKKKQARVEIEKSIELLAPAVANREQVMRNVIDSAKLRIAAR 159          
BLAST of mRNA_P-wetherbeei_contig677.2.1 vs. uniprot
Match: A0A4D9CSX3_9STRA (TRASH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSX3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.580e-31
Identity = 66/153 (43.14%), Postives = 94/153 (61.44%), Query Frame = 1
Query:    4 VRVDVCYFCSGPIYPGHGMHFVRNDSK--------------------------------------DTTFDFEKLRNRPIKYDRELMGKTLRAVKKAK-VQKKREQRFFEMRHKDRAAKEKAEIREQISQNIELIAPAAADREKTLVNVRERAK 345
            +R+  CYFCSGP+YPGHG  FVRND+K                                      D TFDFEK RNRP+KYDR+L+GKT++A++K + +Q +RE+ F++ R ++   KEKA ++ ++ +N+EL+APAAA REK L+NVRE+ K
Sbjct:    1 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKARWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKVLLNVREKVK 153          
BLAST of mRNA_P-wetherbeei_contig677.2.1 vs. uniprot
Match: A0A448YUA5_9STRA (TRASH domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YUA5_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.610e-31
Identity = 70/159 (44.03%), Postives = 97/159 (61.01%), Query Frame = 1
Query:    4 VRVDVCYFCSGPIYPGHGMHFVRNDSK--------------------------------------DTTFDFEKLRNRPIKYDRELMGKTLRAVKKAK-VQKKREQRFFEMRHKDRAAKEKAEIREQISQNIELIAPAAADREKTLVNVRERAKVAVAAR 363
            +R++ CYFCS P YPGHG+ FVRNDSK                                      D+TFDFEK RNRP+KYDR+LMGKT+ A+++ + ++K REQRFF+ R KD  A++K + R +I ++IEL+APA A+RE+ + NV + AK  +AAR
Sbjct:    1 MRIEKCYFCSSPCYPGHGITFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMRRVESIKKAREQRFFDNRVKDSKAEKKQQARVEIEKSIELLAPAVANREQVMRNVIDSAKQRIAAR 159          
BLAST of mRNA_P-wetherbeei_contig677.2.1 vs. uniprot
Match: W7T7Z2_9STRA (Ribosome biogenesis protein rlp24 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7Z2_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.060e-30
Identity = 66/153 (43.14%), Postives = 94/153 (61.44%), Query Frame = 1
Query:    4 VRVDVCYFCSGPIYPGHGMHFVRNDSK--------------------------------------DTTFDFEKLRNRPIKYDRELMGKTLRAVKKAK-VQKKREQRFFEMRHKDRAAKEKAEIREQISQNIELIAPAAADREKTLVNVRERAK 345
            +R+  CYFCSGP+YPGHG  FVRND+K                                      D TFDFEK RNRP+KYDR+L+GKT++A++K + +Q +RE+ F++ R ++   KEKA ++ ++ +N+EL+APAAA REK L+NVRE+ K
Sbjct:   77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAASREKALLNVREKVK 229          
BLAST of mRNA_P-wetherbeei_contig677.2.1 vs. uniprot
Match: A0A7S0PX55_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PX55_9STRA)

HSP 1 Score: 115 bits (288), Expect = 4.210e-30
Identity = 68/159 (42.77%), Postives = 95/159 (59.75%), Query Frame = 1
Query:    4 VRVDVCYFCSGPIYPGHGMHFVRNDSK--------------------------------------DTTFDFEKLRNRPIKYDRELMGKTLRAVKKAK-VQKKREQRFFEMRHKDRAAKEKAEIREQISQNIELIAPAAADREKTLVNVRERAKVAVAAR 363
            +RV+ CYFCS P YPGHGM FVRNDSK                                      D+TF+FEK RNRP+KYDR+LMGKT+ A+++ + +++ RE+RFF  R KD  A++K + R +I ++IEL+APA A RE+ + NV + A+  +AAR
Sbjct:    1 MRVEKCYFCSSPCYPGHGMMFVRNDSKTFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAIDSTFEFEKRRNRPVKYDRDLMGKTILAMQRVQNIKENREERFFANRMKDAKAEKKQQARVEIEKSIELLAPAVASREQVMKNVVDSARARIAAR 159          
BLAST of mRNA_P-wetherbeei_contig677.2.1 vs. uniprot
Match: A0A6U3SB39_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SB39_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.290e-30
Identity = 67/159 (42.14%), Postives = 96/159 (60.38%), Query Frame = 1
Query:    4 VRVDVCYFCSGPIYPGHGMHFVRNDSK--------------------------------------DTTFDFEKLRNRPIKYDRELMGKTLRAVKKAK-VQKKREQRFFEMRHKDRAAKEKAEIREQISQNIELIAPAAADREKTLVNVRERAKVAVAAR 363
            +R++ CYFCS P YPGHGM FVRNDSK                                      D+TF+FEK RNRP+KYDR LMGKT+ A+++ + +++KRE+RFF  R KD   ++KA+ R +I + IEL+APA A+RE+ + NV ++A+  +A+R
Sbjct:    1 MRIEKCYFCSSPCYPGHGMVFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKELAIDSTFEFEKRRNRPVKYDRNLMGKTILAMQRVQAIKEKREERFFANRMKDAKKEQKAQARVEIEKGIELLAPAVANREEVMRNVVDKARERIASR 159          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig677.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ76_ECTSI2.680e-4666.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z8F8_9STRA3.630e-4455.63RL30, ribosomal protein 30 60S large ribosomal sub... [more]
A0A6H5KA78_9PHAE2.350e-3851.52TRASH domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S3DS96_9STRA2.220e-3245.28Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A1E7FH63_9STRA2.550e-3244.6560S ribosomal protein L24 n=1 Tax=Fragilariopsis c... [more]
A0A4D9CSX3_9STRA1.580e-3143.14TRASH domain-containing protein n=2 Tax=Monodopsid... [more]
A0A448YUA5_9STRA1.610e-3144.03TRASH domain-containing protein n=2 Tax=Pseudo-nit... [more]
W7T7Z2_9STRA1.060e-3043.14Ribosome biogenesis protein rlp24 n=1 Tax=Nannochl... [more]
A0A7S0PX55_9STRA4.210e-3042.77Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A6U3SB39_9STRA6.290e-3042.14Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig677contigP-wetherbeei_contig677:756..1686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZ76
Preferred nameRSL24D1
PFAMsRibosomal_L24e
Model size375
Max annot lvl2759|Eukaryota
KEGG koko:K02896
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0001671,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030234,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032781,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050790,GO:0051336,GO:0051345,GO:0060589,GO:0060590,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902626,GO:1990904
Exons3
Evalue4.39e-47
EggNOG OGsCOG2075@1|root,KOG1723@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L24e-related
Ec32 orthologEc-13_002830.1
Descriptionassembly of large subunit precursor of preribosome
Cds size375
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186936.1534357-CDS-P-wetherbeei_contig677:755..9521683186936.1534357-CDS-P-wetherbeei_contig677:755..952Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig677 756..952 -
1683186936.1694014-CDS-P-wetherbeei_contig677:1165..12591683186936.1694014-CDS-P-wetherbeei_contig677:1165..1259Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig677 1166..1259 -
1683186936.1810117-CDS-P-wetherbeei_contig677:1602..16861683186936.1810117-CDS-P-wetherbeei_contig677:1602..1686Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig677 1603..1686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig677.2.1prot_P-wetherbeei_contig677.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig677 756..1686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig677.2.1

>prot_P-wetherbeei_contig677.2.1 ID=prot_P-wetherbeei_contig677.2.1|Name=mRNA_P-wetherbeei_contig677.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
MVRVDVCYFCSGPIYPGHGMHFVRNDSKDTTFDFEKLRNRPIKYDRELMG
KTLRAVKKAKVQKKREQRFFEMRHKDRAAKEKAEIREQISQNIELIAPAA
ADREKTLVNVRERAKVAVAARAARA
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mRNA from alignment at P-wetherbeei_contig677:756..1686-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig677.2.1 ID=mRNA_P-wetherbeei_contig677.2.1|Name=mRNA_P-wetherbeei_contig677.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=931bp|location=Sequence derived from alignment at P-wetherbeei_contig677:756..1686- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCGCGTCGATGTCTGCTACTTCTGCTCTGGCCCCATCTACCCCGG CCATGGCATGCACTTCGTTCGAAACGACTCAAAGGTGCGCGGTTCACCTT TCTCTGGTCCTCGCTTCGCCCACCTCCAATCATTCCTCAATGCCTCTTCA CTCGCTTTACCAAATCAACTCCTTTCATTTCGCAGGTCTTCAAGTTCTGC CGATCAAAATGCCACCGGAACTTCCAGCGGAAGCGAAATCCGCGGAAGGT GAAATGGACGAAGGCCTTCCGAAAGGCAGCAGGGAAAGAGATGGCCGTGG TGAGTGAAGCAATTCTTCCCGTGATTCGAAGCACCCGCGCCGATTGTTGA GTTCCTGTTGTTACTTCGGCAGTTCCTTATGTCGTGGTTTTTGCTTTTCT TCCACTTCTTTGCTTCCAACATCAAAGGACACCACCTTCGACTTCGAAAA GCTGCGGAATCGGCCAATCAAGTACGATCGGGAACTCATGGGCAAGACCC TTCGGGCCGTCAAGAAGGCAAGTAGGAGGGACTTTGGTTCTTGGGTGTTG CATGGACCATCTCTCCTTGCACCTCTAAAAAGGCGATTAAGTTCTCGTTT CTTTGTGTTGCCCCCATAACTCAGTTTTTCTCTTCCCCCACCTTCTGAAA CCGTCTCTCGATTCTGATCTCTTGCATGTTTTCTCACCCGTTTCCCTTTC CTGCCATCTATATGCGCCTCTCCACAGGTCCAAGAGGTGCAGAAGAAGCG GGAGCAGCGGTTCTTCGAGATGCGGCACAAGGACCGCGCGGCGAAGGAGA AAGCGGAGATCCGCGAGCAGATCTCGCAGAACATCGAACTCATCGCGCCA GCCGCTGCAGACCGCGAAAAGACACTCGTCAACGTCCGCGAGCGCGCAAA GGTCGCCGTGGCCGCCCGCGCCGCACGAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig677:756..1686-

>mRNA_P-wetherbeei_contig677.2.1 ID=mRNA_P-wetherbeei_contig677.2.1|Name=mRNA_P-wetherbeei_contig677.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig677:756..1686- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCGCGTCGATGTCTGCTACTTCTGCTCTGGCCCCATCTACCCCGG
CCATGGCATGCACTTCGTTCGAAACGACTCAAAGGACACCACCTTCGACT
TCGAAAAGCTGCGGAATCGGCCAATCAAGTACGATCGGGAACTCATGGGC
AAGACCCTTCGGGCCGTCAAGAAGGCAAAGGTGCAGAAGAAGCGGGAGCA
GCGGTTCTTCGAGATGCGGCACAAGGACCGCGCGGCGAAGGAGAAAGCGG
AGATCCGCGAGCAGATCTCGCAGAACATCGAACTCATCGCGCCAGCCGCT
GCAGACCGCGAAAAGACACTCGTCAACGTCCGCGAGCGCGCAAAGGTCGC
CGTGGCCGCCCGCGCCGCACGAGCC
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