mRNA_P-wetherbeei_contig6766.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6766.1.1
Unique NamemRNA_P-wetherbeei_contig6766.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6766.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6766contigP-wetherbeei_contig6766:53..3145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2308
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003410.1
Cds size2307
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186935.900999-CDS-P-wetherbeei_contig6766:52..4501683186935.900999-CDS-P-wetherbeei_contig6766:52..450Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6766 53..450 +
1683186935.9106848-CDS-P-wetherbeei_contig6766:701..15451683186935.9106848-CDS-P-wetherbeei_contig6766:701..1545Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6766 702..1545 +
1683186935.9187396-CDS-P-wetherbeei_contig6766:1829..19381683186935.9187396-CDS-P-wetherbeei_contig6766:1829..1938Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6766 1830..1938 +
1683186935.9267426-CDS-P-wetherbeei_contig6766:2189..31451683186935.9267426-CDS-P-wetherbeei_contig6766:2189..3145Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6766 2190..3145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6766.1.1prot_P-wetherbeei_contig6766.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6766 53..3145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6766.1.1

>prot_P-wetherbeei_contig6766.1.1 ID=prot_P-wetherbeei_contig6766.1.1|Name=mRNA_P-wetherbeei_contig6766.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=769bp
QTLPFLRQPPGPPPPPPPSQLMRREQSRQAAALRSRLQQWPSWRLRNDDA
PNDQAPPLGETLLAPFFRPPSPAKAVLGLTENAAVPDVGNAKGSCGGGGI
SGGTEKERVFGGGIADREAPCEIFSKVFRKEDRHQGKGMEFLFSSSKILL
AVEYPPAATGAGGDGAPRGRAAGAAGMTAAAPAAGATAVAAGTANTAVAA
AATTMEATAATQTVQTFPGSCNAGAAAAVGLDGSSVGVAPYDGTMQAPPP
VMPLGRSDTVEAINTAASPREARTAVDMAAAIAVHVPTTAALFPPGLALS
GPAADAAAHAAAAAALEAAVRFEADAAVKAPTAEPAAPPAKTSGTAATAI
PVGSSSPVAAAVATGAVATAPAAASAQQRLQKPPSSAIIVSSCPDFERHF
GFASREVVGMTLAEVLAGPGTNRKTLWDLAVVMSTGVGSASCYVNLYNRE
GEPVSCYVSLCKLSVSPIHGTPSVGSTPAPPTAAAARAAASAGHAAAGTN
LTTNPAGAAAAAAAVCSAVAPVPSACQAAVPHHLLLAAGKGPMPRAPAVP
AAANGLTAAAVAVVSAAADAGTAVGRSACGPLAAPDGASVAADAAGAAAT
AAAAKAAVAVPEISVADQPAGERNSHGKTSCNNACAIEEKLPALLNCQPA
AAASAVSSFVSSGGSASSRFPSDRGGSGRGGSSGGGDSSGNSAASGGTAP
PGAGGTCLYMAMIVHASTLGYITMPGLLQDFFSNVHSDSEDDGGGGGGGG
PEDSSSHDGSSSSGSSEDG
back to top

mRNA from alignment at P-wetherbeei_contig6766:53..3145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6766.1.1 ID=mRNA_P-wetherbeei_contig6766.1.1|Name=mRNA_P-wetherbeei_contig6766.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3093bp|location=Sequence derived from alignment at P-wetherbeei_contig6766:53..3145+ (Phaeothamnion wetherbeei SAG_119_79)
CAAACCCTGCCGTTTTTGCGCCAGCCCCCAGGGCCGCCGCCGCCGCCGCC
ACCATCACAGCTTATGAGGCGCGAGCAGAGTCGGCAGGCGGCGGCGCTGC
GGTCAAGGCTGCAGCAGTGGCCATCCTGGCGACTCCGAAACGACGATGCG
CCTAATGACCAGGCGCCGCCTCTTGGAGAAACCCTGCTGGCGCCGTTCTT
CCGGCCCCCATCACCAGCGAAAGCAGTACTTGGTTTGACAGAAAATGCCG
CCGTTCCGGACGTCGGCAATGCCAAAGGCTCCTGCGGCGGCGGCGGCATC
AGCGGTGGCACCGAAAAGGAGAGGGTGTTTGGCGGCGGCATCGCGGATCG
CGAAGCCCCCTGCGAGATCTTCTCCAAGGTATTTCGGAAGGAGGACAGGT
GAGGCAGACGTCTAATAACGAGCTTGCACAGGGCTAAAAGGACCGAAAGT
AACCACACATGGCAAAAATGCAGAAAGGGGCTAGAGGATAGGGGCGTTGG
ACAGGACAGCCCAACTACAGTTTTCCCTCTGGCAACGTGTCGCTGCGGTT
TTTACTCTACCGGCATCCTCCTGAACGTCATTCTGCCGTAAACCTCTAGG
TCGCCTCTCTAATTTCCTTGCCGTTCGTGTCCGCTACCACCCACCCCAGG
CACCAAGGGAAAGGGATGGAGTTTCTGTTTTCAAGCTCGAAGATCTTGCT
GGCCGTTGAGTATCCGCCTGCCGCAACGGGAGCCGGAGGAGACGGTGCGC
CGCGCGGCCGCGCCGCTGGCGCAGCAGGCATGACGGCGGCAGCACCCGCG
GCGGGGGCGACCGCGGTGGCAGCGGGCACAGCGAACACGGCGGTGGCAGC
TGCGGCGACTACAATGGAGGCAACAGCAGCGACGCAGACGGTTCAGACTT
TTCCCGGCAGTTGCAACGCGGGAGCTGCCGCGGCTGTCGGCCTTGATGGC
TCCAGCGTCGGTGTCGCCCCATATGACGGCACCATGCAGGCGCCGCCGCC
GGTCATGCCGCTTGGACGCAGCGACACTGTTGAAGCGATTAATACTGCCG
CGTCGCCGCGTGAAGCAAGGACGGCTGTCGACATGGCGGCCGCCATCGCT
GTGCATGTGCCCACCACAGCGGCTTTGTTTCCTCCTGGTCTGGCACTGAG
CGGCCCGGCGGCGGACGCAGCGGCGCACGCGGCGGCCGCGGCAGCGCTGG
AAGCAGCTGTCCGCTTCGAGGCAGATGCAGCCGTAAAAGCTCCGACGGCA
GAACCGGCAGCGCCGCCAGCAAAAACATCGGGGACGGCCGCGACAGCCAT
TCCCGTGGGGTCGTCGTCGCCGGTGGCGGCGGCGGTGGCGACTGGGGCGG
TGGCCACTGCGCCGGCGGCGGCAAGCGCGCAGCAGCGCCTGCAAAAGCCA
CCTTCATCAGCGATCATCGTTTCGTCCTGCCCCGACTTCGAACGGCACTT
CGGCTTTGCAAGCCGGGAGGTCGTGGGCATGACCTTGGCAGAGGTACGCC
GATGGTTACATTCTGGCGGCGTGTTGATCAACTTGCGACAGCAGGAGCAT
ATTGAAACTCAAAGGAATTGGGGGGAGGGGTTGGGTTGGATGACCCGACC
TGCGCCTTCCTTCTACCCTCCTCTTTCCCATTACATCTTTCAGCCATACA
ATACATGAGCACCGCCTCGAACCGCTATTTCTATAGCTAAGAACTCCCTG
TAACCGTCGCCACTGCAACTGTGTGTTTCGCCGCTACCACCCGCCGATGC
TGCCGCCGCTGTCGCTGTTCTTTCCAGGTGCTGGCGGGGCCCGGCACGAA
CCGCAAGACGCTGTGGGACCTGGCGGTGGTGATGAGCACCGGCGTCGGCA
GCGCCAGCTGCTACGTCAACCTCTACAACCGCGAAGGTGCATAATGTGTA
GAGAGACGTGGACAGGAAAATGGACAAGAATCAAGGAACTTTGTTCCCAT
TTCTCCAGCCGGCCCTTCTGTTCTTTGCCTGTTGCTTCTGAAGCGGACTC
CTTTTGCTAAGGCCGCAGCGCGGCTGTTCCAACTACTAGGCGAAGCGTTT
CTACTTCCGCTGTCATGATTGTATGATCGCTTACTCAACCCTCGCGAAAA
CCGCCGACTCTGTCCGCACTCGCTCGACTTGCGCCAGGGGAGCCTGTGAG
CTGCTACGTGTCCCTGTGCAAGCTCAGCGTGTCGCCCATCCACGGCACGC
CATCTGTGGGCTCAACGCCCGCCCCGCCGACCGCCGCCGCAGCACGAGCT
GCTGCCAGCGCCGGCCATGCTGCGGCAGGGACAAACCTCACCACCAATCC
CGCGGGCGCTGCCGCCGCCGCCGCGGCCGTCTGCTCCGCCGTTGCCCCTG
TGCCAAGCGCTTGCCAAGCTGCCGTGCCGCATCACCTCTTGCTGGCAGCC
GGCAAAGGGCCAATGCCCAGAGCGCCGGCAGTGCCAGCAGCGGCGAATGG
ACTCACCGCGGCAGCCGTCGCTGTTGTTTCTGCTGCCGCCGACGCCGGCA
CCGCCGTCGGCAGGTCTGCTTGTGGTCCTTTGGCGGCACCTGATGGTGCG
AGCGTTGCTGCAGATGCCGCCGGTGCTGCCGCCACCGCAGCAGCAGCCAA
AGCCGCTGTCGCTGTGCCAGAGATTAGTGTCGCCGATCAACCCGCCGGCG
AACGGAACAGCCACGGCAAAACATCCTGTAACAACGCCTGTGCTATAGAG
GAGAAGCTTCCCGCGCTGTTGAACTGCCAGCCTGCCGCGGCTGCCAGTGC
CGTCAGCAGCTTCGTCAGCTCGGGCGGCAGCGCTTCCAGCCGCTTTCCCA
GCGACAGAGGTGGCAGCGGTCGCGGTGGCAGCAGCGGCGGCGGCGACAGC
AGCGGCAATTCGGCCGCCAGCGGCGGCACCGCTCCCCCCGGCGCGGGGGG
GACCTGCCTGTATATGGCGATGATCGTGCATGCCTCGACGCTGGGCTACA
TCACCATGCCCGGACTCCTCCAGGATTTCTTTTCGAATGTCCATTCCGAC
TCCGAAGACGACGGCGGCGGCGGCGGCGGCGGCGGCCCTGAGGACTCGTC
CAGCCACGACGGCAGCAGTAGCAGCGGCAGCAGCGAGGACGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6766:53..3145+

>mRNA_P-wetherbeei_contig6766.1.1 ID=mRNA_P-wetherbeei_contig6766.1.1|Name=mRNA_P-wetherbeei_contig6766.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2307bp|location=Sequence derived from alignment at P-wetherbeei_contig6766:53..3145+ (Phaeothamnion wetherbeei SAG_119_79)
CAAACCCTGCCGTTTTTGCGCCAGCCCCCAGGGCCGCCGCCGCCGCCGCC
ACCATCACAGCTTATGAGGCGCGAGCAGAGTCGGCAGGCGGCGGCGCTGC
GGTCAAGGCTGCAGCAGTGGCCATCCTGGCGACTCCGAAACGACGATGCG
CCTAATGACCAGGCGCCGCCTCTTGGAGAAACCCTGCTGGCGCCGTTCTT
CCGGCCCCCATCACCAGCGAAAGCAGTACTTGGTTTGACAGAAAATGCCG
CCGTTCCGGACGTCGGCAATGCCAAAGGCTCCTGCGGCGGCGGCGGCATC
AGCGGTGGCACCGAAAAGGAGAGGGTGTTTGGCGGCGGCATCGCGGATCG
CGAAGCCCCCTGCGAGATCTTCTCCAAGGTATTTCGGAAGGAGGACAGGC
ACCAAGGGAAAGGGATGGAGTTTCTGTTTTCAAGCTCGAAGATCTTGCTG
GCCGTTGAGTATCCGCCTGCCGCAACGGGAGCCGGAGGAGACGGTGCGCC
GCGCGGCCGCGCCGCTGGCGCAGCAGGCATGACGGCGGCAGCACCCGCGG
CGGGGGCGACCGCGGTGGCAGCGGGCACAGCGAACACGGCGGTGGCAGCT
GCGGCGACTACAATGGAGGCAACAGCAGCGACGCAGACGGTTCAGACTTT
TCCCGGCAGTTGCAACGCGGGAGCTGCCGCGGCTGTCGGCCTTGATGGCT
CCAGCGTCGGTGTCGCCCCATATGACGGCACCATGCAGGCGCCGCCGCCG
GTCATGCCGCTTGGACGCAGCGACACTGTTGAAGCGATTAATACTGCCGC
GTCGCCGCGTGAAGCAAGGACGGCTGTCGACATGGCGGCCGCCATCGCTG
TGCATGTGCCCACCACAGCGGCTTTGTTTCCTCCTGGTCTGGCACTGAGC
GGCCCGGCGGCGGACGCAGCGGCGCACGCGGCGGCCGCGGCAGCGCTGGA
AGCAGCTGTCCGCTTCGAGGCAGATGCAGCCGTAAAAGCTCCGACGGCAG
AACCGGCAGCGCCGCCAGCAAAAACATCGGGGACGGCCGCGACAGCCATT
CCCGTGGGGTCGTCGTCGCCGGTGGCGGCGGCGGTGGCGACTGGGGCGGT
GGCCACTGCGCCGGCGGCGGCAAGCGCGCAGCAGCGCCTGCAAAAGCCAC
CTTCATCAGCGATCATCGTTTCGTCCTGCCCCGACTTCGAACGGCACTTC
GGCTTTGCAAGCCGGGAGGTCGTGGGCATGACCTTGGCAGAGGTGCTGGC
GGGGCCCGGCACGAACCGCAAGACGCTGTGGGACCTGGCGGTGGTGATGA
GCACCGGCGTCGGCAGCGCCAGCTGCTACGTCAACCTCTACAACCGCGAA
GGGGAGCCTGTGAGCTGCTACGTGTCCCTGTGCAAGCTCAGCGTGTCGCC
CATCCACGGCACGCCATCTGTGGGCTCAACGCCCGCCCCGCCGACCGCCG
CCGCAGCACGAGCTGCTGCCAGCGCCGGCCATGCTGCGGCAGGGACAAAC
CTCACCACCAATCCCGCGGGCGCTGCCGCCGCCGCCGCGGCCGTCTGCTC
CGCCGTTGCCCCTGTGCCAAGCGCTTGCCAAGCTGCCGTGCCGCATCACC
TCTTGCTGGCAGCCGGCAAAGGGCCAATGCCCAGAGCGCCGGCAGTGCCA
GCAGCGGCGAATGGACTCACCGCGGCAGCCGTCGCTGTTGTTTCTGCTGC
CGCCGACGCCGGCACCGCCGTCGGCAGGTCTGCTTGTGGTCCTTTGGCGG
CACCTGATGGTGCGAGCGTTGCTGCAGATGCCGCCGGTGCTGCCGCCACC
GCAGCAGCAGCCAAAGCCGCTGTCGCTGTGCCAGAGATTAGTGTCGCCGA
TCAACCCGCCGGCGAACGGAACAGCCACGGCAAAACATCCTGTAACAACG
CCTGTGCTATAGAGGAGAAGCTTCCCGCGCTGTTGAACTGCCAGCCTGCC
GCGGCTGCCAGTGCCGTCAGCAGCTTCGTCAGCTCGGGCGGCAGCGCTTC
CAGCCGCTTTCCCAGCGACAGAGGTGGCAGCGGTCGCGGTGGCAGCAGCG
GCGGCGGCGACAGCAGCGGCAATTCGGCCGCCAGCGGCGGCACCGCTCCC
CCCGGCGCGGGGGGGACCTGCCTGTATATGGCGATGATCGTGCATGCCTC
GACGCTGGGCTACATCACCATGCCCGGACTCCTCCAGGATTTCTTTTCGA
ATGTCCATTCCGACTCCGAAGACGACGGCGGCGGCGGCGGCGGCGGCGGC
CCTGAGGACTCGTCCAGCCACGACGGCAGCAGTAGCAGCGGCAGCAGCGA
GGACGGC
back to top