mRNA_P-wetherbeei_contig6757.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6757.1.1
Unique NamemRNA_P-wetherbeei_contig6757.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6757.1.1 vs. uniprot
Match: A0A7S2FX27_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FX27_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.440e-23
Identity = 62/158 (39.24%), Postives = 93/158 (58.86%), Query Frame = 2 
Query:  266 SCVRILHELAPWRPAAEAMIAADEAVLSLLVRGCLELPLPRDAAFVAECAKRLVLLSPEPRGFVAMATTALDEGLVRFAVQEVLESPELMVAGAVLDPSATKVHIVELLKTLAAHPSLAARMADLFDDLPAWRKYKHQDHDLFMATEAPVDYFLTDDT 739
            S +R++H++       EA+IA+ E VL +++R  L   L RDAAF+ +    L   S +  G+  +  T++   L    +++VLE+P+L     V+DP+A KVH V LLK L    +   ++ ++ D  PAWRKYKHQDH LF+  +  VDYFLT DT
Sbjct:   60 STLRLIHQIVECTSCVEALIASPEGVLKVMLR-LLVPDLSRDAAFIVQGLLSL-FQSKKAHGYPILVETSIANSLTTKLLEDVLENPQL---AQVIDPAACKVHTVSLLKLLVEDMTYGDQIGEILDGHPAWRKYKHQDHTLFLTADQRVDYFLTSDT 212
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BLAST of mRNA_P-wetherbeei_contig6757.1.1 vs. uniprot
Match: A0A7R9U7A2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7A2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 5.570e-15
Identity = 55/171 (32.16%), Postives = 96/171 (56.14%), Query Frame = 2 
Query:  263 VSCVRILHELAPWRPAAEAMIAADEAVLSLLVRGCLELP---LPRDAAFVAECAKRLVLLSPEPRGFVAMATTALDEGLVRFAVQEVLESPELMVAGAVLDPSATKVHIVELLKTLAAHPSLAARMADLFDDLPAWRKYKHQDHDLFMATEAPVDYFLTDDTEALGRKLLL 766
            ++ +R+LH+L     A +A      A L +  R  +E      P D+AF+ E   ++V     P+   A+ +TA+ +GL+ + ++ VLE  E  ++  + DP A +VHI+++LKTLAAHP + A +  + +   +W +Y  Q  +L++  E  VDYFLT+D+  +   LL+
Sbjct:  231 LAVLRLLHQLMESPSAVDAAATVPHANLLVEFRRGIEQDGKGYPPDSAFILEAMAKVVCSECRPQSLKALLSTAIADGLIVWLLK-VLEDKEDKLSD-IRDPEAARVHIIQILKTLAAHPEIGAHVNSVLEKNESWEQYTGQRQELYLTAEHRVDYFLTNDSHKVESLLLI 399
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BLAST of mRNA_P-wetherbeei_contig6757.1.1 vs. uniprot
Match: A0A7S2RGR7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RGR7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.700e-12
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = 2 
Query:  446 RGFVAMATTALDEGLVRFAVQEVLESPELMVAGAVLDPSATKVHIVELLKTLAAHPSLAARMADLFDDLPAWRKYKHQDHDLFMA-TEAPVDYFLTDDTEALGRKLLLTA 772
            +G  A    A+   L +F V++VLE+P L+    V DP++ KVH +ELLK L   P+   +   + D +  W+KYK+QDH LF+   E  +DYFL D  E  G K LLTA
Sbjct:  201 KGRSAFLNAAIKLELAKFLVEQVLENPTLI---NVKDPASVKVHSIELLKLLTLDPAYGLQFNIILDSISLWKKYKNQDHSLFITGVEQKIDYFLLDGVE--GNKKLLTA 305
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BLAST of mRNA_P-wetherbeei_contig6757.1.1 vs. uniprot
Match: A0A7S2P8T3_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P8T3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.050e-11
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 2 
Query:  449 GFVAMATTALDEGLVRFAVQEVLESPELMVAGAVLDPSATKVHIVELLKTLAAHPSLAARMADLFDDLPAWRKYKHQDHDLFMA-TEAPVDYFLTDDTEALGRKLLLT 769
            G  A+  +AL   L RF V+ VLE+   +    VLDP+A KVH V+L K L   P    +   + D L  WRKYK QDH LF+  +E  VDYFLTD       K +LT
Sbjct: 3095 GRTALLESALQYELPRFLVEHVLENAASL--SRVLDPAAAKVHAVDLCKLLCRDPGYGLKFRLILDSLEGWRKYKDQDHSLFITGSEQKVDYFLTDGGAGAASKKMLT 3200
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BLAST of mRNA_P-wetherbeei_contig6757.1.1 vs. uniprot
Match: A0A7S3P865_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P865_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.720e-11
Identity = 42/99 (42.42%), Postives = 52/99 (52.53%), Query Frame = 2 
Query:  449 GFVAMATTALDEGLVRFAVQEVLESPELMVAGAVLDPSATKVHIVELLKTLAAHPSLAARMADLFDDLPAWRKYKHQDHDLFMATEAPVDYFLTDDTEA 745
            G V +   AL   L +F V + LE+  L     + DP+A KVH V LLK L   P    +   +  DLPAW KYK QDH L +AT    DYFLT   +A
Sbjct:   16 GRVTLLHQALACRLCQFLVNDFLENVSL---EEIKDPAAGKVHAVNLLKLLTMDPGYGMKFKLILKDLPAWSKYKSQDHSLMLATTKRTDYFLTAGEQA 111
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6757.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S2FX27_9STRA8.440e-2339.24Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7R9U7A2_9STRA5.570e-1532.16Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2RGR7_9STRA3.700e-1241.82Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2P8T3_9STRA2.050e-1143.52Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S3P865_9STRA9.720e-1142.42Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6757contigP-wetherbeei_contig6757:594..2927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1606
Hectar predicted targeting categoryother localisation
Exons4
Cds size1230
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6757.1.1prot_P-wetherbeei_contig6757.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6757 913..2870 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186935.0711257-UTR-P-wetherbeei_contig6757:593..9121683186935.0711257-UTR-P-wetherbeei_contig6757:593..912Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6757 594..912 +
1683186935.124526-UTR-P-wetherbeei_contig6757:2870..29271683186935.124526-UTR-P-wetherbeei_contig6757:2870..2927Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6757 2871..2927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186935.0823927-CDS-P-wetherbeei_contig6757:912..10771683186935.0823927-CDS-P-wetherbeei_contig6757:912..1077Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6757 913..1077 +
1683186935.0930114-CDS-P-wetherbeei_contig6757:1342..14291683186935.0930114-CDS-P-wetherbeei_contig6757:1342..1429Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6757 1343..1429 +
1683186935.1030183-CDS-P-wetherbeei_contig6757:1718..18261683186935.1030183-CDS-P-wetherbeei_contig6757:1718..1826Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6757 1719..1826 +
1683186935.1127038-CDS-P-wetherbeei_contig6757:2000..28701683186935.1127038-CDS-P-wetherbeei_contig6757:2000..2870Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6757 2001..2870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6757.1.1

>prot_P-wetherbeei_contig6757.1.1 ID=prot_P-wetherbeei_contig6757.1.1|Name=mRNA_P-wetherbeei_contig6757.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=410bp
MIAADEAVLSLLVRGCLELPLPRDAAFVAECAKRLVLLSPEPRGFVAMAT
TALDEGLVRFAVQEVLESPELMVAGAVLDPSATKVHIVELLKTLAAHPSL
AARMADLFDDLPAWRKYKHQDHDLFMATEAPVDYFLTDDTEALGRKLLLT
AAGHAQPPSPQQQPPPWQPQPEQPLACSPPTSASQPPPPPPPLLSPLRQR
GSPPDGGVAGTSGGACGGCPAVVGGMADADPLTGFLQPTGGASSIAGWMD
GLGGAGGGGSGGGGGAAAGPFGAAVAAHTFGGGGPAAAGGGGGDGGGDGG
GNWMDGRSAGGAGNPGGGGGPGGGPGSAVHVTIVKDPVLGLGIDLKKEGE
TMVVKAVKPEARFAGPRQLQDGDVIAAVGGVVCETFTKGVRLLKAAEGEI
HLIVSRRRK*
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mRNA from alignment at P-wetherbeei_contig6757:594..2927+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6757.1.1 ID=mRNA_P-wetherbeei_contig6757.1.1|Name=mRNA_P-wetherbeei_contig6757.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2334bp|location=Sequence derived from alignment at P-wetherbeei_contig6757:594..2927+ (Phaeothamnion wetherbeei SAG_119_79)
TGTACCGTTTCTATGTGTGGTTTGCCTTTCTGTGCAGCCTTCTCCTGGAA
ATGAAGGTCAACAGACTTGTCTAATGGCTTGTTCCTACTTGTACTCTTTA
AAGGTTCTTTTGCAGCAACGAAAGCTGCCGAAACCGTCGTAAACGGTTCG
CGCCTCGCATCTTCAATCTTCACCTTTTTTCCATCTCATTTCCTATAATT
TCTTACTTCTTTCTCAACACACGCATTGCCATGAGCACTGCGACCGACGG
TGCGCACGGCAGGTGTCGTGCGTGCGCATCTTACACGAGCTGGCGCCGTG
GCGGCCGGCGGCGGAGGCGATGATCGCGGCGGACGAGGCGGTGCTGTCGC
TGCTCGTGCGCGGCTGCCTCGAGCTGCCGCTGCCGCGAGACGCCGCCTTT
GTCGCTGAGTGCGCCAAGCGGCTCGTGCTGCTCTCGCCCGAGCCGCGCGG
CTTTGTCGCCATGGCCACTACGGCGCTCGACGAGGTATGCTGCGTCGCTC
CTGCTGGTCTGTCAACTTCCCTTTGTTCGTCTTGTTTTGGTTTTTGGACG
CGTTCATTATCATGCGACTGCAGTTTGGCTTAGAGTGGCCGTGAGAGGAA
GTCGTGGCCCCATCGCTTCGCGATCCTTGCTAACGTGCTGCTGCTTGGAG
GTCAGGATGAGCCTAGTTTTTTGAGGTTGGCTAATTTTGTTTAATCAATT
CCATTCCGTTGGCAATCACACTTTGAAACATTCTTCTTGGACACCGCAGG
GCCTGGTGCGATTCGCAGTACAGGAGGTGCTGGAGTCTCCGGAGCTGATG
GTCGCCGGCGCCGTCCTCGATCCCAGCGCCACCAAGGTGAGGAAGAGAGA
GGGCGCGGAGCGAGGGAGTTGCAGTTATCGTTGCTACCGTTGCTGCATGC
ATAGTCAGTCTCAGCTACTGGCGCCGCCGCTGCCGCCGCCGTTGCCGCTG
GCGCCGCACCTGCCGCTACGTTGCTGTCTTCTCGCTCCGGCACCGCTGCT
AATGCGTCGCACCTTCTCCTTCCTATCCCACACGCACCAATTCTTTTGCG
TGCCGACGTCGCTGTGCGTTGTCCACTGCTCGCTGATTGTTCTCTGTCTT
GGGCGGCCGAATTCCGCCATCACAGGTGCACATAGTGGAGCTGCTGAAGA
CGCTGGCGGCCCATCCGTCGCTGGCGGCGCGGATGGCGGACCTTTTCGAT
GACCTCCCCGCTTGGCGCAAGTACAAACACCAGGTGCATCCGGCCGGCTA
TCCCCCGGTCCGTCGCCGTTGGGCTGATTAGTGGGATGACGAGGCTGCGG
AGCTGACGTATTTGGCGGAAAGTTCAACCGATTCGCTCGCTTTGCGACCT
CCACAGTTCTTCGAAATTTCTCACGGGAAAATGACCTCTCTCCCCGTCGG
TCGGCAGGATCACGATCTCTTCATGGCAACAGAGGCGCCCGTGGACTACT
TTCTCACCGACGACACGGAGGCCCTCGGCAGAAAACTGCTCCTCACGGCG
GCCGGTCACGCCCAGCCGCCGTCGCCGCAGCAGCAGCCGCCGCCGTGGCA
GCCGCAGCCGGAGCAACCTTTGGCATGCTCTCCGCCAACATCGGCCTCGC
AGCCGCCGCCGCCGCCGCCGCCGCTGTTGTCGCCACTGCGGCAGCGGGGA
TCGCCGCCGGACGGCGGCGTGGCAGGAACAAGCGGCGGCGCGTGCGGTGG
CTGCCCTGCTGTCGTGGGGGGGATGGCGGACGCAGATCCGCTGACGGGGT
TTCTGCAGCCCACAGGAGGCGCTTCCTCCATCGCCGGCTGGATGGATGGA
CTTGGGGGCGCCGGTGGTGGCGGCAGCGGCGGCGGCGGCGGGGCTGCTGC
TGGACCATTTGGGGCCGCAGTTGCTGCTCACACTTTCGGTGGTGGTGGTC
CCGCTGCTGCTGGCGGCGGCGGCGGCGACGGCGGCGGCGACGGCGGCGGC
AACTGGATGGACGGTCGGAGCGCCGGTGGCGCCGGCAACCCTGGCGGTGG
CGGGGGTCCCGGCGGCGGGCCGGGCAGCGCCGTCCACGTGACAATCGTTA
AGGACCCGGTCCTGGGGCTTGGCATCGACCTGAAGAAGGAGGGCGAGACG
ATGGTGGTGAAGGCGGTCAAGCCCGAGGCGCGCTTCGCCGGGCCGCGGCA
GCTGCAGGACGGGGATGTGATTGCGGCGGTCGGCGGGGTCGTCTGCGAGA
CATTTACGAAGGGCGTGCGGCTGCTCAAGGCGGCCGAGGGGGAGATTCAC
CTCATCGTGTCGCGGCGGAGGAAATAGCGACGCAGTGTAATCAGACATTT
TTAAGAATAATGACGTTTGCCAAGGAAAACTGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6757:594..2927+

>mRNA_P-wetherbeei_contig6757.1.1 ID=mRNA_P-wetherbeei_contig6757.1.1|Name=mRNA_P-wetherbeei_contig6757.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1230bp|location=Sequence derived from alignment at P-wetherbeei_contig6757:594..2927+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGCGGCGGACGAGGCGGTGCTGTCGCTGCTCGTGCGCGGCTGCCT
CGAGCTGCCGCTGCCGCGAGACGCCGCCTTTGTCGCTGAGTGCGCCAAGC
GGCTCGTGCTGCTCTCGCCCGAGCCGCGCGGCTTTGTCGCCATGGCCACT
ACGGCGCTCGACGAGGGCCTGGTGCGATTCGCAGTACAGGAGGTGCTGGA
GTCTCCGGAGCTGATGGTCGCCGGCGCCGTCCTCGATCCCAGCGCCACCA
AGGTGCACATAGTGGAGCTGCTGAAGACGCTGGCGGCCCATCCGTCGCTG
GCGGCGCGGATGGCGGACCTTTTCGATGACCTCCCCGCTTGGCGCAAGTA
CAAACACCAGGATCACGATCTCTTCATGGCAACAGAGGCGCCCGTGGACT
ACTTTCTCACCGACGACACGGAGGCCCTCGGCAGAAAACTGCTCCTCACG
GCGGCCGGTCACGCCCAGCCGCCGTCGCCGCAGCAGCAGCCGCCGCCGTG
GCAGCCGCAGCCGGAGCAACCTTTGGCATGCTCTCCGCCAACATCGGCCT
CGCAGCCGCCGCCGCCGCCGCCGCCGCTGTTGTCGCCACTGCGGCAGCGG
GGATCGCCGCCGGACGGCGGCGTGGCAGGAACAAGCGGCGGCGCGTGCGG
TGGCTGCCCTGCTGTCGTGGGGGGGATGGCGGACGCAGATCCGCTGACGG
GGTTTCTGCAGCCCACAGGAGGCGCTTCCTCCATCGCCGGCTGGATGGAT
GGACTTGGGGGCGCCGGTGGTGGCGGCAGCGGCGGCGGCGGCGGGGCTGC
TGCTGGACCATTTGGGGCCGCAGTTGCTGCTCACACTTTCGGTGGTGGTG
GTCCCGCTGCTGCTGGCGGCGGCGGCGGCGACGGCGGCGGCGACGGCGGC
GGCAACTGGATGGACGGTCGGAGCGCCGGTGGCGCCGGCAACCCTGGCGG
TGGCGGGGGTCCCGGCGGCGGGCCGGGCAGCGCCGTCCACGTGACAATCG
TTAAGGACCCGGTCCTGGGGCTTGGCATCGACCTGAAGAAGGAGGGCGAG
ACGATGGTGGTGAAGGCGGTCAAGCCCGAGGCGCGCTTCGCCGGGCCGCG
GCAGCTGCAGGACGGGGATGTGATTGCGGCGGTCGGCGGGGTCGTCTGCG
AGACATTTACGAAGGGCGTGCGGCTGCTCAAGGCGGCCGAGGGGGAGATT
CACCTCATCGTGTCGCGGCGGAGGAAATAG
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