mRNA_P-wetherbeei_contig6755.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6755.1.1
Unique NamemRNA_P-wetherbeei_contig6755.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6755.1.1 vs. uniprot
Match: D7FHM1_ECTSI (TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM1_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 7.160e-88
Identity = 161/328 (49.09%), Postives = 216/328 (65.85%), Query Frame = 1
Query:  205 PEDHGMGSGENLVIMELGSWRLRCGLVSLHGGXXXXXXXXXXXXXXXXXXXXXGNGYFDDFPCCVARPRRAGADTYELVSAASGAMSAGMYANFRAEGVFVGQDAWFCCMEHPDAALRSKLDMAGPYERGKLVPERAEDLWRLCGNAFRHLRQDPATAALLVTFKPSASSAEIVCLARGFMERFQVPALRLVNEATLAALATGVQTGIMVDIGEGSVSVTPLYEGYVLWETLRLERVGGHDLSRYLDYMLLSRTNEDFNQMVERRRVEYARRVKEGHCYVSRDFDAEARRAGHFKRKSMRVFEGARLSDKLAGRYEDCASRSHLEAAD 1188
            P DHG+G   N V++ELG+WR+R G+V+  G                       + YFDDFPCCVARP R GAD  ELV+ AS +++A MY+ FR  GVFVG DAW+CC++HP  ALRSKL ++ P  R    P R ED  RL  +A+  L+QD + +  L+T+KP+A+  E++ LA   +E  +VPA+R+VNEA LAALA GV+ G++VDIGE  VSVTP+++G+ +   +R E  GG D++++LDYMLLSRTNE FNQM +RRR+EY R +KE  CYV  DF  E    G FKRK+MRV +GA+ S  L+G YE C SR  ++  D
Sbjct: 1244 PADHGLGREGNTVVLELGAWRVRAGVVTPSG------------------EEGKSSSYFDDFPCCVARPSREGADLDELVNGAS-SLAAPMYSKFRDTGVFVGGDAWYCCLDHPSIALRSKLRLSCPMRRRDQPPSR-EDTERLADHAYGLLKQDSSLSPTLLTYKPTATVDEVLALASVLLEVHRVPAIRMVNEAQLAALAVGVKVGVIVDIGESGVSVTPIFDGFPVPPAVRSECCGGGDVTKFLDYMLLSRTNEHFNQMTDRRRLEYTREMKEEQCYVPLDFALEVEEYGAFKRKAMRVCKGAQASPMLSG-YEACDSRDFIDETD 1550          
BLAST of mRNA_P-wetherbeei_contig6755.1.1 vs. uniprot
Match: A0A6H5JDL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL2_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 7.370e-67
Identity = 139/328 (42.38%), Postives = 190/328 (57.93%), Query Frame = 1
Query:  205 PEDHGMGSGENLVIMELGSWRLRCGLVSLHGGXXXXXXXXXXXXXXXXXXXXXGNGYFDDFPCCVARPRRAGADTYELVSAASGAMSAGMYANFRAEGVFVGQDAWFCCMEHPDAALRSKLDMAGPYERGKLVPERAEDLWRLCGNAFRHLRQDPATAALLVTFKPSASSAEIVCLARGFMERFQVPALRLVNEATLAALATGVQTGIMVDIGEGSVSVTPLYEGYVLWETLRLERVGGHDLSRYLDYMLLSRTNEDFNQMVERRRVEYARRVKEGHCYVSRDFDAEARRAGHFKRKSMRVFEGARLSDKLAGRYEDCASRSHLEAAD 1188
            P DHG+G   N V++ELG+WR+R G+V+  G                       + YFDDFPCCVARP + GAD  ELV+ AS +++A MY+ FR                                          ED  RL  +A+  L+QD + +  L+T+KP+A+  E++ LA   +E  +VPA+R+VNEA LAALA GV+ G++VDIGE  VSVTP+++G+ +   +R E  GG D++++LDYMLLSRTNE FNQM +RRR+EY R +KE HCYV  DF  E    G FKRK+MRV +GA+ S  L+G YE C SR  ++  D
Sbjct:  659 PADHGLGREGNTVVLELGAWRVRAGVVTPSG------------------EEGKSSSYFDDFPCCVARPSKEGADLGELVNGAS-SLAAPMYSKFR-----------------------------------------EEDTVRLADHAYGLLKQDSSLSPTLLTYKPTATVDEVLALASVLLEVHRVPAIRMVNEAQLAALAVGVKVGVIVDIGESGVSVTPIFDGFPVPPAVRSECCGGGDVTKFLDYMLLSRTNEHFNQMTDRRRLEYTREMKEEHCYVPLDFALEVEEYGAFKRKAMRVCKGAQASPMLSG-YEACDSRDFIDDTD 925          
BLAST of mRNA_P-wetherbeei_contig6755.1.1 vs. uniprot
Match: W7TNT9_9STRA (Actin-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNT9_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.080e-45
Identity = 110/335 (32.84%), Postives = 173/335 (51.64%), Query Frame = 1
Query:  175 LEAAAERLREPEDHGMGSGENLVIMELGSWRLRCGLVSLHGGXXXXXXXXXXXXXXXXXXXXXGNGYFDDFPCCVARPRRAGADTYELVSAASGAMSAGMYANFRAEGVFVGQDAWFCCMEHPDAALRSKLDMAGPYERGKLVPERAEDLWRLCGNAFRHLRQDPATAALLVTFKPSASSAEIVCLARGFMERFQVPALRLVNEATLAALATGVQTGIMVDIGEGSVSVTPLYEGYVLWETLRLERVGGHDLSRYLDYMLLSRTNEDFNQMVERRRVEYARRVKEGHCYVSRDFDAEARRAGHFKRKSMRV--FEGARLSDK---LAGRYEDCAS 1164
            +E ++   + P     G   +   +E+G+WR+R G V +                              +FPC +ARP +A AD   +V  AS    A MY  FR  GVF+G+DAW+C  +HPD  LR  L +  P++R +L+  R  DL  L    F           L+VT+KP+++  E   +     E  +  ++R +NEAT+ +    V T + +D+GE +  V P+YE  +L + +    +GG DL++Y+ YMLLSR NE ++ +VER+ +E AR +KE H YV+ DF+ E  R G F+R+ + V  F  A+++ +   + GR  D AS
Sbjct:  869 MEWSSSSWKPPTTFPGGDPTDFFFVEIGTWRIRAGWVEVGTSKSFQTV---------------------EFPCIIARPSKASADLTTIVQHASIKADA-MYGRFREMGVFIGKDAWYCAFDHPDPVLRGSLKLEAPFDRDRLI--RPADLKLLLKYVFEKCEVCLTKTPLVVTYKPTSTLKEREEVVEMLFEYCEASSVRFLNEATMLSSLANVVTALTIDLGEDTTRVVPIYEQMILEKGVETAALGGIDLTKYMAYMLLSRRNEVYSSLVERKMLEVARLIKESHAYVAADFNCERGRYGTFEREKIDVMKFHRAQIATEESVVPGRRLDMAS 1179          
BLAST of mRNA_P-wetherbeei_contig6755.1.1 vs. uniprot
Match: A0A2G5T3C6_9PELO (Uncharacterized protein n=3 Tax=Caenorhabditis nigoni TaxID=1611254 RepID=A0A2G5T3C6_9PELO)

HSP 1 Score: 89.7 bits (221), Expect = 6.430e-16
Identity = 50/168 (29.76%), Postives = 96/168 (57.14%), Query Frame = 1
Query:  565 LDMAGPYERGKLVP-ERAEDLWRLCGNAFRHLRQDPATAALLVTFKPSASSAEIVCLARGFMERFQVPALRLVNEATLAALATGVQTGIMVDIGEGSVSVTPLYEGYVLWETLRLERVGGHDLSRYLDYMLLSRTNEDFNQMVERRRVEYARRVKEGHCYVSRDFDAE 1065
            ++M+ P +RG ++  + A +LW    +AF +LR  P    +++T  P A++A+   +   F E+F  P +   N+A ++ + +G  TGI+++ GE +  +TP+++G V+   +    +GGH L+ YL  M+ +  +  F   V    +E AR++KE   YV++D++ E
Sbjct:   68 VEMSSPIQRGIVIDWDGATELWE---HAFNNLRITPKCHPMVLTESPFATNADREKMTEIFFEKFNTPGVCFANQAIMSLIGSGRTTGIVIESGENTTHITPIFKGRVITGAVNHLDIGGHQLTEYLTTMVSAERSHIFPNGVT---LEMARQIKENLGYVAQDYELE 229          
BLAST of mRNA_P-wetherbeei_contig6755.1.1 vs. uniprot
Match: A0A0F7SJY3_PHARH (Actin actin-like protein n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SJY3_PHARH)

HSP 1 Score: 84.7 bits (208), Expect = 2.870e-14
Identity = 61/176 (34.66%), Postives = 87/176 (49.43%), Query Frame = 1
Query:  547 AALRSKLDMAGPYERGKLVPERAEDLWRLCGNAFRH-LRQDPATAALLVTFKPSASSAEIVCLARGFMERFQVPALRLVNEATLAALATGVQTGIMVDIGEGSVSVTPLYEGYVLWETLRLERVGGHDLSRYLDYMLLSRTNEDFNQMVERRRVEYARRVKEGHCYVSRDFDAEAR 1071
            A  RS L++  P E G  + +  ED+  L    FR  L+ DPA   +L+T  P         +A    E F V  + +  +A L   A G+QTG++VD G+G   + P+YEGY L    R   V G D++RYL  +LL R    FN+  +    E  R +KE  CY S D + + R
Sbjct:  103 AEHRSFLNVTHPMEHG--IVKNWEDMIHLWDYTFREKLQVDPAGRKVLLTEPPMNPKRNREKMAEVMFENFNVGGVYVAIQAVLTLYAQGLQTGVVVDSGDGVTHIVPVYEGYALPHLTRRLDVAGRDVTRYLIKLLLMR-GYAFNRTAD---FETVRGIKEKLCYTSYDLEQDKR 272          
BLAST of mRNA_P-wetherbeei_contig6755.1.1 vs. uniprot
Match: A0A1Y3MVE0_PIRSE (Actin-related protein 2 n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3MVE0_PIRSE)

HSP 1 Score: 79.0 bits (193), Expect = 2.640e-13
Identity = 56/189 (29.63%), Postives = 91/189 (48.15%), Query Frame = 1
Query:  481 NFRAEGVFVGQDAWFCCMEHPDAALRSKLDMAGPYERGKLVPERAEDLWRLCGNAF-RHLRQDPATAALLVTFKPSASSAEIVCLARGFMERFQVPALRLVNEATLAALATGVQTGIMVDIGEGSVSVTPLYEGYVLWETLRLERVGGHDLSRYLDYMLLSRTNEDFNQMVERRRVEYARRVKEGHCYV 1044
            N   + + VG++A         A LR+ L++  P E G +V    ED++ L    F   L+ DP    +L+T          + + +   ER+   A+ +  +A L     G+QTG++VD G+G   + P+YEG+ L    R   + G D++RYL  +LL +    FN   +    E  R++KE  CYV
Sbjct:   46 NVELKDIMVGEEA---------AELRTMLELKYPMENGIIV--NWEDMFHLWDYTFYEKLKIDPKQCKVLLTEPAQNPKNNRIKMVQAMFERYGFQAVYVAIQAVLTLYGQGIQTGVVVDSGDGVTHIVPIYEGFALPHLTRRLDIAGRDITRYLIKLLLLK-GYPFNSTAD---FETIRQMKEKLCYV 219          
BLAST of mRNA_P-wetherbeei_contig6755.1.1 vs. uniprot
Match: UPI0018F66F78 (uncharacterized protein LOC119967165 isoform X1 n=2 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F66F78)

HSP 1 Score: 82.8 bits (203), Expect = 2.980e-13
Identity = 59/180 (32.78%), Postives = 86/180 (47.78%), Query Frame = 1
Query:  538 HPDAALRSKLDMAGPYERGKLVP-ERAEDLWRLCGNAFRHLRQDPATAALLVT---FKPSASSAEIVCLARGFMERFQVPALRLVNEATLAALATGVQTGIMVDIGEGSVSVTPLYEGYVLWETLRLERVGGHDLSRYLDYMLLSRTNEDFNQMVERRRVEYARRVKEGHCYVSRDFDAE 1065
            H    +R  L +  P E G +   E  E +W      +R LR DP    +L+T     P  +   +V +     E F VP   +  +A LA  ++G  TGI +D G+G     P+YEGY +   ++   + G DL+ YL  +L  R    FN   ER   E  R +KE HCYV+ D++AE
Sbjct: 1657 HDAQHMRGVLSLHYPLEHGIVTDWEEIEKIWH--HTFYRQLRVDPQEHPILLTEAAMNPHQNRERMVEI---MFEVFNVPFSYVAMQAVLALYSSGRTTGITLDSGDGVTHTVPVYEGYSIPHAIQRLNLAGRDLTEYLRKLLKER-GYSFNTSAER---EIVRDIKEKHCYVAEDYEAE 1827          
BLAST of mRNA_P-wetherbeei_contig6755.1.1 vs. uniprot
Match: UPI001BB24DFB (actin-5-like n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB24DFB)

HSP 1 Score: 81.3 bits (199), Expect = 3.010e-13
Identity = 54/172 (31.40%), Postives = 85/172 (49.42%), Query Frame = 1
Query:  553 LRSKLDMAGPYERGKLVPERAEDLWRLCGNAF-RHLRQDPATAALLVTFKPSASSAEIVCLARGFMERFQVPALRLVNEATLAALATGVQTGIMVDIGEGSVSVTPLYEGYVLWETLRLERVGGHDLSRYLDYMLLSRTNEDFNQMVERRRVEYARRVKEGHCYVSRDFDAE 1065
            +R  L +  P E G  +    +D+ ++  + F + LR DPA   +L T  P ++ A      +   E+F   A  +  +  L+  A+G    +MVDIG+G +SV P+ EGY++   +     GG DL++ +  ML  R    F    ER   E  R +KE  CYV+ +FD E
Sbjct:   67 MRGLLSLRYPIEHG--IVTNWDDMEKIWHHTFYKELRTDPAECPVLFTDVPESTKAGREKTTQIMFEKFGAKAFHICTQGVLSHCASGRTMAVMVDIGDGVISVVPISEGYIITPAIHQVNFGGRDLTQIMMKMLNDR-GYSFVTTAER---EIVREIKENLCYVALEFDTE 232          
BLAST of mRNA_P-wetherbeei_contig6755.1.1 vs. uniprot
Match: A0A835YLL4_9STRA (Actin-related protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLL4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.280e-13
Identity = 61/179 (34.08%), Postives = 89/179 (49.72%), Query Frame = 1
Query:  547 AALRSKLDMAGPYERGKLVPERA--EDLWRLCGNAFRHLRQDPATAALLVTFKPSASSAEIVCLARGFMERFQVPALRLVNEATLAALATGVQTGIMVDIGEGSVSVTPLYEGYVLWETLRLERVGGHDLSRYLDYMLLSRTNEDFNQMVERRRVEYARRVKEGHCYVSRDFDAEARRA 1077
            AA R+ LD   P E G ++   A  E+LW+        L+ DPA   +L+T  P   S     +     E F   A+ +  +A L   A G+QTG++VD G+G   V P+Y+GYV    +    V G  ++RY+  +LL R    FN+  +    E  R++KE  CYV+ D  AE R A
Sbjct:   64 AAARASLDTTYPVENG-IIKNWADMEELWKY--TFHEKLKVDPAAHKILLTEPPLNPSRNRERMCERMFEGFGFGAVNVSIQAILTLYAQGLQTGVVVDTGDGVSHVIPVYDGYVPQNLICRLDVAGRHITRYMIKLLLLR-GYAFNRTAD---FETVRQIKEKLCYVAADIQAERRLA 235          
BLAST of mRNA_P-wetherbeei_contig6755.1.1 vs. uniprot
Match: A0A0G4I989_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I989_9ALVE)

HSP 1 Score: 80.5 bits (197), Expect = 5.930e-13
Identity = 58/184 (31.52%), Postives = 88/184 (47.83%), Query Frame = 1
Query:  532 MEHPDAALRSKLDMAGPYERGKLVPERAEDLWRLCGNAFR-HLRQDPATAALLVTFKPSASSAEIVCLARGFMERFQVPALRLVNEATLAALATGVQTGIMVDIGEGSVSVTPLYEGYVLWETLRLERVGGHDLSRYLDYMLLSRTNEDFNQMVERRRVEYARRVKEGHCYVSRDFDAEARRAG 1080
            +EHP      KL +  P E  ++  E   D+  +  + FR  L   P   ALL+T  P         +     E   VP L+L   + LA    G  +G++VD+G+G V   P+ +GYV+   +R    GG +++  L  +L+ +    F      R  E ARR+KE HC+VS+D +AEA   G
Sbjct:   60 LEHP------KLRVTNPMEHSQI--EDMADMTEIWQHVFRDRLETSPEDQALLMTEPPFNPRPVREKMGEALFETLGVPHLQLAVASLLALYGEGRTSGLVVDVGDGGVLALPVQQGYVMSHLMRRNEFGGAEVTDRLRTLLVEKQISLFKN----RHYEIARRMKESHCFVSQDPEAEAEGRG 231          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6755.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHM1_ECTSI7.160e-8849.09TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus sil... [more]
A0A6H5JDL2_9PHAE7.370e-6742.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TNT9_9STRA1.080e-4532.84Actin-like protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A2G5T3C6_9PELO6.430e-1629.76Uncharacterized protein n=3 Tax=Caenorhabditis nig... [more]
A0A0F7SJY3_PHARH2.870e-1434.66Actin actin-like protein n=1 Tax=Phaffia rhodozyma... [more]
A0A1Y3MVE0_PIRSE2.640e-1329.63Actin-related protein 2 n=1 Tax=Piromyces sp. (str... [more]
UPI0018F66F782.980e-1332.78uncharacterized protein LOC119967165 isoform X1 n=... [more]
UPI001BB24DFB3.010e-1331.40actin-5-like n=2 Tax=Lytechinus variegatus TaxID=7... [more]
A0A835YLL4_9STRA3.280e-1334.08Actin-related protein 2 n=1 Tax=Tribonema minus Ta... [more]
A0A0G4I989_9ALVE5.930e-1331.52Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6755contigP-wetherbeei_contig6755:1..2144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHM1
PFAMsActin,BRCT,Filamin,Ist1,PARP,PARP_reg,VIT,VWA_3
Model size1188
Max annot lvl2759|Eukaryota
KEGG koko:K10798,ko:K11767
KEGG Pathwayko03410,ko04210,ko04212,ko04214,ko04217,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.17e-88
EggNOG OGsCOG5277@1|root,KOG0676@2759|Eukaryota
EC2.4.2.30
DescriptionATP binding
Cds size1188
COG categoryZ
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03032,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186934.9211626-CDS-P-wetherbeei_contig6755:0..2261683186934.9211626-CDS-P-wetherbeei_contig6755:0..226Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6755 1..226 -
1683186934.9334822-CDS-P-wetherbeei_contig6755:524..7271683186934.9334822-CDS-P-wetherbeei_contig6755:524..727Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6755 525..727 -
1683186934.9471827-CDS-P-wetherbeei_contig6755:962..11141683186934.9471827-CDS-P-wetherbeei_contig6755:962..1114Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6755 963..1114 -
1683186934.9591436-CDS-P-wetherbeei_contig6755:1453..19701683186934.9591436-CDS-P-wetherbeei_contig6755:1453..1970Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6755 1454..1970 -
1683186934.9729092-CDS-P-wetherbeei_contig6755:2054..21441683186934.9729092-CDS-P-wetherbeei_contig6755:2054..2144Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6755 2055..2144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6755.1.1prot_P-wetherbeei_contig6755.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6755 1..2144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6755.1.1

>prot_P-wetherbeei_contig6755.1.1 ID=prot_P-wetherbeei_contig6755.1.1|Name=mRNA_P-wetherbeei_contig6755.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=396bp
SAASGGGGASSGGGSDYSGGLGSTTATPFFLQSPPHKRSAWGGGGGHGRS
HMRATSANLEAAAERLREPEDHGMGSGENLVIMELGSWRLRCGLVSLHGG
GGADENVASCGGGGSSSGGGSGNGYFDDFPCCVARPRRAGADTYELVSAA
SGAMSAGMYANFRAEGVFVGQDAWFCCMEHPDAALRSKLDMAGPYERGKL
VPERAEDLWRLCGNAFRHLRQDPATAALLVTFKPSASSAEIVCLARGFME
RFQVPALRLVNEATLAALATGVQTGIMVDIGEGSVSVTPLYEGYVLWETL
RLERVGGHDLSRYLDYMLLSRTNEDFNQMVERRRVEYARRVKEGHCYVSR
DFDAEARRAGHFKRKSMRVFEGARLSDKLAGRYEDCASRSHLEAAD
back to top

mRNA from alignment at P-wetherbeei_contig6755:1..2144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6755.1.1 ID=mRNA_P-wetherbeei_contig6755.1.1|Name=mRNA_P-wetherbeei_contig6755.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2144bp|location=Sequence derived from alignment at P-wetherbeei_contig6755:1..2144- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCAGCATCGGGCGGCGGCGGCGCCAGCAGCGGCGGCGGCAGCGACTA CAGCGGTGGCCTTGGAAGCACCACGGCGACGCCCTTCTTCGTTGGGGACG CCGATTCGCCTTCCGAGAGCAGCCTTAGCATCGCCGGCACGGAGGGTGTG ACTGCCGACGATGGCGCTCCCGAGCTCCAAAGCCCGCCCCACAAGCGGTC GGCGTGGGGCGGCGGCGGCGGCCACGGGCGGTCGCACATGCGGGCGACGT CGGCCAACCTCGAGGCGGCGGCGGAGCGGCTGCGGGAGCCAGAGGACCAC GGGATGGGCTCTGGTGAGAACCTGGTCATCATGGAGCTCGGCTCGTGGCG GCTGCGCTGCGGCCTCGTCTCGCTGCACGGCGGCGGCGGCGCCGACGAGA ACGTTGCCTCTTGCGGCGGCGGTGGGAGCAGCAGCGGCGGTGGCAGCGGG AACGGGTACTTTGACGATTTTCCGTGCTGCGTGGCACGGCCGCGGCGTGC GGGCGCTGACACGTACGAGCTCGTCAGCGCGGCGTCGGGAGCGATGTCGG CAGGCATGTACGCGAATTTTCGGGCCGAGGGCGTGTTTGTGGGGCAGGAC GCGTGGTTCTGCTGCATGGAGCATCCGGATGCGGCGCTGCGTTCCAAGCT CGACATGGCGGGGCCTTACGAGCGCGGGAAGCTCGTGCCCGGTGAGTGGA TGGGGACAGGGCTGGCCGGATGGTTCGCTGAGGGGTAATGTGCGCATGGT GATTATTTTTGGATGTTTGTCGCTTGCGGTCTAATTTCCTTTCATTGCTT TGAGATGAAAGGGGTTGACACGTTCGCTGCGGCTACAGCTGCAGCATGTG GTGGCGGCATCAGGTAGCTCTGGGCTATCAGTTTAGCGGGCTTGAAGAGA TTTATTTGGCCGAGATTTAAAAGCTACTGGCCTTGGTAACCTCAGTTCGT GTGCATTTGTGTCTTAGCGACATTTCCCTCAACTTCCTCCCATCTTCATT AATTTCTGCCTTCTACTTTCGAATCGACAGAGCGGGCGGAGGACCTTTGG CGGCTGTGCGGCAATGCCTTCCGCCACTTGCGACAAGATCCGGCGACGGC CGCCCTTCTGGTGACCTTCAAGCCGTCCGCTTCATCGGCAGAGATCGTCT GCCTCGCCCGCGGCTTCATGGAGCGCTTCCAGGTGAGGCGGCAGTTATCT GGTTGCTTTTCGGCCGCTGCCGTTTCACCGCCATGCGCCGCTGCCGGTCC TATTACAGAGTTCTTTTGGCTGGCCGGGCATTGAATGGCAGCCTCGTGGA AATTTGTAAGAGCCCTAATTGGTAATTTTTTCGTACCCGCCCTTTCCCTG GTTTTACGTCGCGGTCGGCTTGCCGTTGGAAACAAATGACCCAACTGAAA CCAACTGGAGCAAGCAGGTCCCAGCGCTGCGGCTGGTGAACGAGGCGACG CTGGCGGCGCTGGCGACGGGCGTGCAGACGGGCATCATGGTGGATATCGG GGAGGGGTCGGTCTCGGTGACGCCGCTCTACGAGGGTTACGTGCTGTGGG AGACGCTGCGCCTGGAGCGCGTCGGCGGCCACGACCTCAGCCGATACCTC GACTACATGCTACTCTCCAGGTCAGCTTTAGCAGTTGGCTTTTACAGCTT TGCGTTTCCGGAGGTGGTTACGGAGCTGGTAATGAATTTTGGCGGAGAGT AATGGGTGGCGGTGATGTTATCCGCCGCGGGCGGTTGCAGGTACAGTTGG CGGCGGCGGAAGCCGCGACAGCCATGGCGGACTTGATTTTTGCGGTGTGC TGCTTTGTCATTCACCCTGCCCTCAGATTGAACCCGTTTTCTCCTTACAC GCCAACCTGACAAAGGCGCTTCTTTCCGACCAAAACTGCATCCGCTACTG CACGCCTTTCGTTACCAGGACGAACGAGGACTTCAACCAGATGGTGGAGC GGCGGCGCGTCGAGTACGCTCGCCGCGTCAAGGAGGGCCACTGCTACGTC AGTCGCGACTTCGACGCCGAGGCCCGCCGTGCCGGACACTTCAAGCGCAA GTCCATGCGGGTCTTCGAGGGTGCGCGGCTGTCGGACAAGTTGGCGGGCC GCTACGAGGACTGTGCGTCGCGGAGCCACCTGGAGGCGGCCGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6755:1..2144-

>mRNA_P-wetherbeei_contig6755.1.1 ID=mRNA_P-wetherbeei_contig6755.1.1|Name=mRNA_P-wetherbeei_contig6755.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1188bp|location=Sequence derived from alignment at P-wetherbeei_contig6755:1..2144- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCAGCATCGGGCGGCGGCGGCGCCAGCAGCGGCGGCGGCAGCGACTA
CAGCGGTGGCCTTGGAAGCACCACGGCGACGCCCTTCTTCCTCCAAAGCC
CGCCCCACAAGCGGTCGGCGTGGGGCGGCGGCGGCGGCCACGGGCGGTCG
CACATGCGGGCGACGTCGGCCAACCTCGAGGCGGCGGCGGAGCGGCTGCG
GGAGCCAGAGGACCACGGGATGGGCTCTGGTGAGAACCTGGTCATCATGG
AGCTCGGCTCGTGGCGGCTGCGCTGCGGCCTCGTCTCGCTGCACGGCGGC
GGCGGCGCCGACGAGAACGTTGCCTCTTGCGGCGGCGGTGGGAGCAGCAG
CGGCGGTGGCAGCGGGAACGGGTACTTTGACGATTTTCCGTGCTGCGTGG
CACGGCCGCGGCGTGCGGGCGCTGACACGTACGAGCTCGTCAGCGCGGCG
TCGGGAGCGATGTCGGCAGGCATGTACGCGAATTTTCGGGCCGAGGGCGT
GTTTGTGGGGCAGGACGCGTGGTTCTGCTGCATGGAGCATCCGGATGCGG
CGCTGCGTTCCAAGCTCGACATGGCGGGGCCTTACGAGCGCGGGAAGCTC
GTGCCCGAGCGGGCGGAGGACCTTTGGCGGCTGTGCGGCAATGCCTTCCG
CCACTTGCGACAAGATCCGGCGACGGCCGCCCTTCTGGTGACCTTCAAGC
CGTCCGCTTCATCGGCAGAGATCGTCTGCCTCGCCCGCGGCTTCATGGAG
CGCTTCCAGGTCCCAGCGCTGCGGCTGGTGAACGAGGCGACGCTGGCGGC
GCTGGCGACGGGCGTGCAGACGGGCATCATGGTGGATATCGGGGAGGGGT
CGGTCTCGGTGACGCCGCTCTACGAGGGTTACGTGCTGTGGGAGACGCTG
CGCCTGGAGCGCGTCGGCGGCCACGACCTCAGCCGATACCTCGACTACAT
GCTACTCTCCAGGACGAACGAGGACTTCAACCAGATGGTGGAGCGGCGGC
GCGTCGAGTACGCTCGCCGCGTCAAGGAGGGCCACTGCTACGTCAGTCGC
GACTTCGACGCCGAGGCCCGCCGTGCCGGACACTTCAAGCGCAAGTCCAT
GCGGGTCTTCGAGGGTGCGCGGCTGTCGGACAAGTTGGCGGGCCGCTACG
AGGACTGTGCGTCGCGGAGCCACCTGGAGGCGGCCGAC
back to top