mRNA_P-wetherbeei_contig6754.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6754.1.1
Unique NamemRNA_P-wetherbeei_contig6754.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6754.1.1 vs. uniprot
Match: A0A7R9U8E9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8E9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.180e-17
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 MRESGGTEFSILRALFLKWDADQSGRTCSRELRGALRGGLGLRVSAQQADEIVAFYERKPGAGDFHYMELVAEVSNAMGNIVHHPSTAEV 270
            MR  GGTEFSI+R +FLKWDADQ+G  C+ ELRGA R    L +S ++AD +VA+Y  K G+   HY EL+ +++    + +HH    EV
Sbjct:  151 MRRDGGTEFSIVRQIFLKWDADQNGMLCAEELRGAARD-FTLTLSRKEADVVVAYYT-KEGSDGMHYQELLEDLTRGTKHYLHHVDGGEV 238
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BLAST of mRNA_P-wetherbeei_contig6754.1.1 vs. uniprot
Match: A0A7S1TRY6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRY6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.280e-15
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 MRESGGTEFSILRALFLKWDADQSGRTCSRELRGALRGGLGLRVSAQQADEIVAFYERKPGAGDFHYMELVAEVSNAMGNIVHHPSTAEV 270
            MR  GGTEFSI+R +FL WDADQSG+    ELRGA R   GLR+SA++A  IV +Y    GA +  Y +LV +++N   + + H S  +V
Sbjct:  204 MRVDGGTEFSIIRKVFLGWDADQSGQLDKEELRGAARD-FGLRLSAREAGIIVDYYSDTEGAHEMSYQKLVKDLTNGTTHYLQHISGNDV 292
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BLAST of mRNA_P-wetherbeei_contig6754.1.1 vs. uniprot
Match: A0A7S2BI80_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI80_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.630e-12
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    1 MRESGGTEFSILRALFLKWDADQSGRTCSRELRGALRGGLGLRVSAQQADEIVAFYERKPGAGDFHYMELVAEVSNAMGNIVHHP 255
            M+ESGGTE S+LR  FL WDAD SG   S E  GALR  LG  +S ++A  IV +Y+ + G G+  Y  LV +VS    + + HP
Sbjct:   14 MKESGGTEGSVLRQAFLNWDADCSGELSSTEFMGALRS-LGCLISQREAQIIVDYYDLE-GDGEMTYPPLVEDVSRGSRHFLQHP 96
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BLAST of mRNA_P-wetherbeei_contig6754.1.1 vs. uniprot
Match: A0A482SPZ1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPZ1_9ARCH)

HSP 1 Score: 61.2 bits (147), Expect = 7.530e-9
Identity = 32/91 (35.16%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:    1 MRESGGTEFSILRALFLKWDADQSGRTCSRELRGALRGGLGLRVSAQQADEIVAFYE--RKPGAGDFHYMELVAEVSNAMGNIVHHPSTAE 267
            MR  GGT +SI+R++F+ WDAD+SG   + EL+  ++  LG++V+  +  EIV +Y    +PG  +  Y EL+ ++     +I+   S  E
Sbjct:  129 MRHKGGTPYSIIRSMFIYWDADKSGNIDANELQSCMKS-LGVKVTLDECREIVNYYRPAERPGE-EMDYQELLQDIQRGEPSIIAFVSQKE 217
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BLAST of mRNA_P-wetherbeei_contig6754.1.1 vs. uniprot
Match: A0A836CKG4_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKG4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.910e-8
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 MRESGGTEFSILRALFLKWDADQSGRTCSRELRGALRGGLGLRVSAQQADEIVAFYERKPGA 186
            +RE GG+E  IL+ALFLKW+  +S  T + ++RGALR  LG+ ++  QADE+V +Y  +  A
Sbjct:  158 IREQGGSEMGILKALFLKWNTSRSFATSADDVRGALRK-LGMNLTRSQADEVVGYYTPRSAA 218
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6754.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7R9U8E9_9STRA1.180e-1747.78Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1TRY6_9STRA1.280e-1547.78Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2BI80_9STRA1.630e-1247.06Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A482SPZ1_9ARCH7.530e-935.16Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A836CKG4_9STRA1.910e-846.77EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6754contigP-wetherbeei_contig6754:2996..3283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009039776.1
Model size288
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.78e-13
EggNOG OGs2BXPI@1|root,2SSFT@2759|Eukaryota
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186934.8272517-CDS-P-wetherbeei_contig6754:2995..32831683186934.8272517-CDS-P-wetherbeei_contig6754:2995..3283Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6754 2996..3283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6754.1.1prot_P-wetherbeei_contig6754.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6754 2996..3283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6754.1.1

>prot_P-wetherbeei_contig6754.1.1 ID=prot_P-wetherbeei_contig6754.1.1|Name=mRNA_P-wetherbeei_contig6754.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=96bp
MRESGGTEFSILRALFLKWDADQSGRTCSRELRGALRGGLGLRVSAQQAD
EIVAFYERKPGAGDFHYMELVAEVSNAMGNIVHHPSTAEVGSPPSA
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mRNA from alignment at P-wetherbeei_contig6754:2996..3283-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6754.1.1 ID=mRNA_P-wetherbeei_contig6754.1.1|Name=mRNA_P-wetherbeei_contig6754.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig6754:2996..3283- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGAATCGGGAGGCACTGAGTTCTCCATCCTCCGGGCGCTCTTCCT
CAAGTGGGACGCCGACCAGTCCGGCCGCACCTGCAGCCGTGAGCTGCGCG
GCGCGCTGCGGGGCGGACTCGGGCTGCGTGTGTCGGCGCAGCAGGCAGAC
GAGATAGTGGCATTTTACGAGCGGAAGCCCGGGGCAGGGGACTTTCACTA
CATGGAATTGGTGGCGGAGGTCAGCAACGCCATGGGGAACATCGTGCACC
ACCCGTCCACCGCCGAGGTGGGGTCGCCGCCGTCCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6754:2996..3283-

>mRNA_P-wetherbeei_contig6754.1.1 ID=mRNA_P-wetherbeei_contig6754.1.1|Name=mRNA_P-wetherbeei_contig6754.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig6754:2996..3283- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGAATCGGGAGGCACTGAGTTCTCCATCCTCCGGGCGCTCTTCCT
CAAGTGGGACGCCGACCAGTCCGGCCGCACCTGCAGCCGTGAGCTGCGCG
GCGCGCTGCGGGGCGGACTCGGGCTGCGTGTGTCGGCGCAGCAGGCAGAC
GAGATAGTGGCATTTTACGAGCGGAAGCCCGGGGCAGGGGACTTTCACTA
CATGGAATTGGTGGCGGAGGTCAGCAACGCCATGGGGAACATCGTGCACC
ACCCGTCCACCGCCGAGGTGGGGTCGCCGCCGTCCGCG
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