mRNA_P-wetherbeei_contig6753.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6753.2.1
Unique NamemRNA_P-wetherbeei_contig6753.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6753.2.1 vs. uniprot
Match: A0A3R7MD85_PENVA (Putative SET and MYND domain-containing protein 4 n=2 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7MD85_PENVA)

HSP 1 Score: 61.6 bits (148), Expect = 9.340e-7
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 2 
Query:  800 VVGQGLFPGLSFFNHSCRPTGYFSMEQRPGELPALAGVVR--ALVSLPAGAEVALSYTPLAACPGAV-RRAWLRQRYLFDCHCPDCAGDGAGAWDGLLRGWRCSACG 1111
            ++G GL P LS FNHSC P+ ++   +         G VR  AL S+ AG EV L+Y P       + RRA+LR +Y F+CHC  C GD +          +C  CG
Sbjct:  246 LIGYGLSPVLSLFNHSCYPSAFYRANE---------GHVRVAALRSVKAGEEVTLNYFPAFVEMDLIPRRAFLRFKYSFECHCEACDGDWSSMSSSSKFQIKCPECG 343
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BLAST of mRNA_P-wetherbeei_contig6753.2.1 vs. uniprot
Match: UPI001FB7CBBF (SET and MYND domain-containing protein 4-like isoform X1 n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB7CBBF)

HSP 1 Score: 60.1 bits (144), Expect = 3.910e-6
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 2 
Query:  800 VVGQGLFPGLSFFNHSCRPTGYFSMEQRPGELPALAGVVRALVSLPAGAEVALSYTPLAACPGAV-RRAWLRQRYLFDCHCPDCAGD 1057
            ++G GL P LSFFNHSC P+  F   +   +       V A+ S+ AG E+ L+Y P     G   RR +LR +Y FDCHC  C G+
Sbjct:  515 LIGLGLSPVLSFFNHSCYPSASFWATECHVK-------VAAMRSVKAGEELTLNYNPALMKMGLTERRTFLRNQYNFDCHCEACDGN 594
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BLAST of mRNA_P-wetherbeei_contig6753.2.1 vs. uniprot
Match: A0A8J2T2U2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2U2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.590e-6
Identity = 45/124 (36.29%), Postives = 58/124 (46.77%), Query Frame = 2 
Query:  701 GESGNNFAIAALVRLLSAIATNAHT---LVDPRRHAVVGQG-LFPGLSFFNHSCRPTGYFSMEQRPGELPALAGVVRALVSLPAGAEVALSYTPLAACPGAVRRAWLRQRYLFDCHCPDCAGDG 1060
            G  G  +A+A      S  A N  T   +     +   G G +F  L   NHSC P    +M  R G        V A  ++P G E+ +SY  L A PGA RRA+LR++Y FDC C  C  DG
Sbjct:  143 GSDGERWAVATARGRKSVRARNLKTAGGIFRTNAYFDGGSGYVFETLCRANHSCAPNCAKAMSDRGGRRVV---DVTARRAVPRGEEITVSYLKLDA-PGAARRAYLREKYNFDCRCARCVLDG 262
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BLAST of mRNA_P-wetherbeei_contig6753.2.1 vs. uniprot
Match: A0A163IQX5_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163IQX5_ABSGL)

HSP 1 Score: 58.2 bits (139), Expect = 1.540e-5
Identity = 39/109 (35.78%), Postives = 55/109 (50.46%), Query Frame = 2 
Query:  734 LVRLLSAIATNAHTLVDPRRHAVVGQGLFPGLSFFNHSCRPTGYFSMEQRPGELPALAGVVRALVSLPAGAEVALSYTPLAACPGAVRRAWLRQRYLFDCHCPDCAGDG 1060
            LVRL S    N  ++ D     VVG+G++P  SFFNHSCRP      +   G L     +++A+  +  G E+ L+Y  +    G  R+  LR RY F C C  C+  G
Sbjct:  198 LVRLQSQFQCNGMSVQDEHLF-VVGEGIYPVASFFNHSCRPNAAAVFD---GSLL----LIKAIEPIGPGEEITLAYIDIGRSRG-YRQRILRDRYFFTCDCVRCSDQG 297
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BLAST of mRNA_P-wetherbeei_contig6753.2.1 vs. uniprot
Match: A0A1W5DCA9_9LECA (SET domain n=1 Tax=Lasallia pustulata TaxID=136370 RepID=A0A1W5DCA9_9LECA)

HSP 1 Score: 55.8 bits (133), Expect = 2.170e-5
Identity = 53/175 (30.29%), Postives = 72/175 (41.14%), Query Frame = 2 
Query:  527 LFILALLIAANSGPLGPHTALLSHETHPELSRETLNGYATAAERLLPLCMPAWRHGCGGESGNNFAIAALVRLLSAIATNAHTLVDPRRHAVVGQGLFPGLSFFNHSCRPTGYFSMEQRPGELPALAGVVRALVSLPAGAEVALSYTPLAACPGAVRRAWLRQRYLFDCHCPDCA 1051
            + +L LL+ A++ P     A L+ E+H  L R T     +  E L  +   A  +    E      ++ +  L++ +  N HTL  P     +G  L    S  NHSC P        R   L       RAL  LP   E   +Y   A  P   R+  LR RY FDC CP CA
Sbjct:    1 MLLLLLLLKAHALPPADWHAFLALESHLSLIRATR---PSTWETLTLISRAAQFYSRSPEP-----LSLIHTLMARLLINTHTLTSPTL-TPLGLYLSAPASLLNHSCAPNTTLIFHHRALSL-------RALHPLPPATEXTTAYVDPAD-PLECRKRDLRDRYFFDCACPQCA 158
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BLAST of mRNA_P-wetherbeei_contig6753.2.1 vs. uniprot
Match: A0A1X2IDR1_9FUNG (Uncharacterized protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IDR1_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 2.750e-5
Identity = 41/111 (36.94%), Postives = 56/111 (50.45%), Query Frame = 2 
Query:  728 AALVRLLSAIATNAHTLVDPRRHAVVGQGLFPGLSFFNHSCRPTGYFSMEQRPGELPALAGVVRALVSLPAGAEVALSYTPLAACPGAVRRAWLRQRYLFDCHCPDCAGDG 1060
            A LVR  S    NA ++ D     VVG+GL+P  SFFNHSCRP      +   G L     +++A+  +  G E+ L+Y  +    G  R+  LR RY F C C  C+  G
Sbjct:  199 ADLVRFQSQSQCNAISVQDEHLF-VVGEGLYPVASFFNHSCRPNAAAVFD---GALL----MIKAIEPIYPGEEITLAYIDIGRSRG-YRQRNLRDRYFFTCDCVRCSDQG 300
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BLAST of mRNA_P-wetherbeei_contig6753.2.1 vs. uniprot
Match: A0A022Q5L7_ERYGU (Uncharacterized protein n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022Q5L7_ERYGU)

HSP 1 Score: 55.8 bits (133), Expect = 6.920e-5
Identity = 35/105 (33.33%), Postives = 52/105 (49.52%), Query Frame = 2 
Query:  734 LVRLLSAIATNAHTLVDPRRHAVVGQGLFPGLSFFNHSCRPTGYFSMEQRPGELPALAGVVRALVSLPAGAEVALSYTPLAACPGAVRRAWLRQRYLFDCHCPDC 1048
            +V     I+ N+H+ +D      VG GL+P +SF NHSC P  +   E R         V+RA+  +P   EV  SY  L+      R+ +L+++Y F C C  C
Sbjct:  160 IVENFGKISCNSHS-IDNSDLKFVGTGLYPVISFTNHSCAPNSFVVFEGR-------LAVMRAMQHMPKDTEVLTSYIELSDST-MTRQKFLKEKYCFTCSCSRC 255
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BLAST of mRNA_P-wetherbeei_contig6753.2.1 vs. uniprot
Match: A0A7S0N155_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N155_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 9.320e-5
Identity = 44/114 (38.60%), Postives = 56/114 (49.12%), Query Frame = 2 
Query:  710 GNNFAIAALVRLLSAIATNAHTL-VDPRRHAVVGQGLFPGLSFFNHSCRPTGYFSMEQRPGELPALAGVVRALVSLPAGAEVALSYTPLAACPGAVRRAWLRQRYLFDCHCPDC 1048
            G+  +   + RLL A+  N+HTL          G GL+   S  NHSCRP   F          A A  VRA+V +PAGAEV +SY  LA      RRA L+ ++ F C C  C
Sbjct:  227 GHRLSEPQVRRLLCALRCNSHTLYASEEEEEAGGVGLYLRASRMNHSCRPNAEFYNV-------ASALHVRAVVDIPAGAEVTVSYVALADDLLTRRRA-LQAQFNFWCRCEWC 332
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6753.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A3R7MD85_PENVA9.340e-738.32Putative SET and MYND domain-containing protein 4 ... [more]
UPI001FB7CBBF3.910e-641.38SET and MYND domain-containing protein 4-like isof... [more]
A0A8J2T2U2_9STRA5.590e-636.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A163IQX5_ABSGL1.540e-535.78Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A1W5DCA9_9LECA2.170e-530.29SET domain n=1 Tax=Lasallia pustulata TaxID=136370... [more]
A0A1X2IDR1_9FUNG2.750e-536.94Uncharacterized protein n=1 Tax=Absidia repens Tax... [more]
A0A022Q5L7_ERYGU6.920e-533.33Uncharacterized protein n=2 Tax=Erythranthe guttat... [more]
A0A7S0N155_9CHLO9.320e-538.60Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6753contigP-wetherbeei_contig6753:1510..2638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3649.evm.model.supercontig_36.10
PFAMsSET,TPR_12,zf-MYND
Model size1130
Max annot lvl35493|Streptophyta
KEGG koko:K11426
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.22e-10
EggNOG OGsCOG2940@1|root,KOG2084@2759|Eukaryota,37P99@33090|Viridiplantae,3GGIC@35493|Streptophyta,3HQZN@3699|Brassicales
DescriptionMYND finger
Cds size1032
COG categoryB
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186934.774273-UTR-P-wetherbeei_contig6753:1509..16061683186934.774273-UTR-P-wetherbeei_contig6753:1509..1606Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6753 1510..1606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186934.795106-CDS-P-wetherbeei_contig6753:1606..26381683186934.795106-CDS-P-wetherbeei_contig6753:1606..2638Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6753 1607..2638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6753.2.1prot_P-wetherbeei_contig6753.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6753 1607..2638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6753.2.1

>prot_P-wetherbeei_contig6753.2.1 ID=prot_P-wetherbeei_contig6753.2.1|Name=mRNA_P-wetherbeei_contig6753.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=344bp
MTVGLSPALAAALAKAAPAVRLAGSRDEVGGAFCVLGQAVGAGAQVALEV
PTAIALEPDERAVRCHACASCPMDEAAVVRDSSSSMEGDNDGDNDVLLSC
CPACNAFRLCESCAVVGFGRHHSPAQCAALRGLGFEGAETAPALFILALL
IAANSGPLGPHTALLSHETHPELSRETLNGYATAAERLLPLCMPAWRHGC
GGESGNNFAIAALVRLLSAIATNAHTLVDPRRHAVVGQGLFPGLSFFNHS
CRPTGYFSMEQRPGELPALAGVVRALVSLPAGAEVALSYTPLAACPGAVR
RAWLRQRYLFDCHCPDCAGDGAGAWDGLLRGWRCSACGGLGGAV
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mRNA from alignment at P-wetherbeei_contig6753:1510..2638+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6753.2.1 ID=mRNA_P-wetherbeei_contig6753.2.1|Name=mRNA_P-wetherbeei_contig6753.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1129bp|location=Sequence derived from alignment at P-wetherbeei_contig6753:1510..2638+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGCCGCGAACACCCCGCTGGCATTTATTTTAGGAAAGGCGGTAACGAG
GAGCCGAAACGAGCGAGGAAAAACTTCCAATTTTTTTTGTTTTCGAAATG
ACAGTGGGGCTGAGCCCAGCGCTTGCTGCCGCCCTGGCGAAAGCTGCGCC
TGCCGTAAGGCTCGCGGGTTCGCGCGACGAGGTCGGTGGCGCTTTCTGTG
TCTTGGGCCAAGCTGTGGGTGCCGGAGCGCAAGTCGCCCTCGAAGTCCCT
ACGGCAATCGCATTGGAGCCCGACGAGCGTGCGGTGCGGTGTCATGCCTG
CGCTTCTTGCCCGATGGACGAGGCGGCTGTCGTTCGGGACTCATCTTCGA
GCATGGAAGGCGACAACGACGGAGATAACGACGTCCTCCTTAGTTGCTGC
CCCGCGTGCAACGCGTTCCGTCTGTGCGAAAGCTGCGCCGTGGTCGGTTT
CGGACGGCACCACTCACCCGCGCAGTGCGCCGCGCTACGCGGGCTCGGCT
TTGAAGGCGCGGAGACAGCGCCGGCGCTCTTCATCTTGGCGCTCCTGATC
GCGGCCAACTCCGGTCCGCTGGGCCCACACACGGCGCTGCTGTCGCACGA
GACGCACCCTGAGCTTTCCCGCGAAACGTTGAACGGCTATGCCACTGCTG
CGGAGCGGCTATTACCCCTCTGCATGCCGGCATGGAGGCACGGCTGCGGC
GGCGAAAGCGGCAACAATTTTGCCATTGCAGCGCTCGTTCGGCTGCTCAG
CGCCATCGCGACGAACGCGCACACGCTGGTGGACCCGCGCCGCCACGCTG
TCGTCGGCCAGGGCCTGTTCCCGGGGCTGAGCTTCTTCAACCATTCGTGC
CGGCCGACGGGCTACTTTTCAATGGAGCAGCGACCGGGAGAGCTTCCGGC
GCTCGCCGGCGTCGTCCGCGCCCTGGTTTCGTTGCCGGCGGGCGCCGAAG
TCGCGCTGAGCTACACGCCGTTGGCGGCCTGCCCCGGCGCCGTTCGGCGG
GCGTGGCTCAGGCAGCGGTACCTCTTCGACTGCCACTGCCCGGACTGCGC
CGGCGACGGAGCCGGGGCCTGGGACGGCCTGCTGCGCGGGTGGCGCTGCA
GCGCGTGCGGCGGGCTCGGCGGGGCGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6753:1510..2638+

>mRNA_P-wetherbeei_contig6753.2.1 ID=mRNA_P-wetherbeei_contig6753.2.1|Name=mRNA_P-wetherbeei_contig6753.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1032bp|location=Sequence derived from alignment at P-wetherbeei_contig6753:1510..2638+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAGTGGGGCTGAGCCCAGCGCTTGCTGCCGCCCTGGCGAAAGCTGC
GCCTGCCGTAAGGCTCGCGGGTTCGCGCGACGAGGTCGGTGGCGCTTTCT
GTGTCTTGGGCCAAGCTGTGGGTGCCGGAGCGCAAGTCGCCCTCGAAGTC
CCTACGGCAATCGCATTGGAGCCCGACGAGCGTGCGGTGCGGTGTCATGC
CTGCGCTTCTTGCCCGATGGACGAGGCGGCTGTCGTTCGGGACTCATCTT
CGAGCATGGAAGGCGACAACGACGGAGATAACGACGTCCTCCTTAGTTGC
TGCCCCGCGTGCAACGCGTTCCGTCTGTGCGAAAGCTGCGCCGTGGTCGG
TTTCGGACGGCACCACTCACCCGCGCAGTGCGCCGCGCTACGCGGGCTCG
GCTTTGAAGGCGCGGAGACAGCGCCGGCGCTCTTCATCTTGGCGCTCCTG
ATCGCGGCCAACTCCGGTCCGCTGGGCCCACACACGGCGCTGCTGTCGCA
CGAGACGCACCCTGAGCTTTCCCGCGAAACGTTGAACGGCTATGCCACTG
CTGCGGAGCGGCTATTACCCCTCTGCATGCCGGCATGGAGGCACGGCTGC
GGCGGCGAAAGCGGCAACAATTTTGCCATTGCAGCGCTCGTTCGGCTGCT
CAGCGCCATCGCGACGAACGCGCACACGCTGGTGGACCCGCGCCGCCACG
CTGTCGTCGGCCAGGGCCTGTTCCCGGGGCTGAGCTTCTTCAACCATTCG
TGCCGGCCGACGGGCTACTTTTCAATGGAGCAGCGACCGGGAGAGCTTCC
GGCGCTCGCCGGCGTCGTCCGCGCCCTGGTTTCGTTGCCGGCGGGCGCCG
AAGTCGCGCTGAGCTACACGCCGTTGGCGGCCTGCCCCGGCGCCGTTCGG
CGGGCGTGGCTCAGGCAGCGGTACCTCTTCGACTGCCACTGCCCGGACTG
CGCCGGCGACGGAGCCGGGGCCTGGGACGGCCTGCTGCGCGGGTGGCGCT
GCAGCGCGTGCGGCGGGCTCGGCGGGGCGGTG
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