mRNA_P-wetherbeei_contig6751.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6751.2.1
Unique NamemRNA_P-wetherbeei_contig6751.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6751.2.1 vs. uniprot
Match: A0A7S3HT09_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT09_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 6.630e-23
Identity = 43/65 (66.15%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 ILQNGIKITNEPPKGLRANLTRTLQDLGDAEYRRCTRPEVFQPLVYALAFFNALVLERRKFGAVG 195
            +LQNGIK+TNEPP+GL+ANLTRT  D+   EY   T+PEV++ +++A AFFNAL+LERRKFGAVG
Sbjct:   50 VLQNGIKVTNEPPRGLKANLTRTFFDISSEEYESSTKPEVYKKMIFATAFFNALILERRKFGAVG 114
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BLAST of mRNA_P-wetherbeei_contig6751.2.1 vs. uniprot
Match: A0A5D6XHL3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHL3_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.060e-21
Identity = 45/65 (69.23%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 ILQNGIKITNEPPKGLRANLTRTLQDLGDAEYRRCTRPEVFQPLVYALAFFNALVLERRKFGAVG 195
            ILQNGIKITNEPPKG+RANL RT  D+ +A+Y  C +P  F+ LV+ALAF+NA+ LERRKFGAVG
Sbjct: 3187 ILQNGIKITNEPPKGIRANLGRTFLDMKEADYEGCAKPREFKKLVFALAFYNAVCLERRKFGAVG 3251
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BLAST of mRNA_P-wetherbeei_contig6751.2.1 vs. uniprot
Match: A0A024U9I2_9STRA (Uncharacterized protein n=15 Tax=Aphanomyces TaxID=100860 RepID=A0A024U9I2_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.060e-21
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 ILQNGIKITNEPPKGLRANLTRTLQDLGDAEYRRCTRPEVFQPLVYALAFFNALVLERRKFGAVG 195
            ILQNGIKITNEPPKG+RANL RT  D+ DA+Y  C++P  ++  ++ALAF+NAL LERRKFGAVG
Sbjct: 3574 ILQNGIKITNEPPKGMRANLGRTFLDMKDADYEGCSKPREYKKFIFALAFYNALCLERRKFGAVG 3638
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BLAST of mRNA_P-wetherbeei_contig6751.2.1 vs. uniprot
Match: A0A225WHR1_9STRA (Dynein heavy chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WHR1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.450e-21
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 ILQNGIKITNEPPKGLRANLTRTLQDLGDAEYRRCTRPEVFQPLVYALAFFNALVLERRKFGAVG 195
            ILQNGIKITNEPPKG++ANL RT  D+ +A+Y  CT+P  F+ L++ALAF+NA+ LERRKFGAVG
Sbjct: 2785 ILQNGIKITNEPPKGIKANLGRTFLDMKEADYEGCTKPREFKKLLFALAFYNAVCLERRKFGAVG 2849
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BLAST of mRNA_P-wetherbeei_contig6751.2.1 vs. uniprot
Match: A0A421GEV9_9STRA (Bromo domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=A0A421GEV9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.450e-21
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 ILQNGIKITNEPPKGLRANLTRTLQDLGDAEYRRCTRPEVFQPLVYALAFFNALVLERRKFGAVG 195
            ILQNGIKITNEPPKG++ANL RT  D+ +A+Y  CT+P  F+ L++ALAF+NA+ LERRKFGAVG
Sbjct: 3651 ILQNGIKITNEPPKGIKANLGRTFLDMKEADYEGCTKPREFKKLLFALAFYNAVCLERRKFGAVG 3715
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BLAST of mRNA_P-wetherbeei_contig6751.2.1 vs. uniprot
Match: A0A3F2RXH9_9STRA (Bromo domain-containing protein n=8 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RXH9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.450e-21
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 ILQNGIKITNEPPKGLRANLTRTLQDLGDAEYRRCTRPEVFQPLVYALAFFNALVLERRKFGAVG 195
            ILQNGIKITNEPPKG++ANL RT  D+ +A+Y  CT+P  F+ L++ALAF+NA+ LERRKFGAVG
Sbjct: 3737 ILQNGIKITNEPPKGIKANLGRTFLDMKEADYEGCTKPREFKKLLFALAFYNAVCLERRKFGAVG 3801
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BLAST of mRNA_P-wetherbeei_contig6751.2.1 vs. uniprot
Match: A0A812PC02_SYMMI (DNAH6 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812PC02_SYMMI)

HSP 1 Score: 95.5 bits (236), Expect = 1.970e-21
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 ILQNGIKITNEPPKGLRANLTRTLQDLGDAEYRRCTRPEVFQPLVYALAFFNALVLERRKFGAVG 195
            +LQNGIK+TNEPP+GLRANL RT  D+   EY  CT+ +V++ L +A AFFNAL+LERRKFGAVG
Sbjct: 1466 VLQNGIKVTNEPPRGLRANLMRTFLDISPDEYEACTKTDVYKKLAFATAFFNALILERRKFGAVG 1530
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BLAST of mRNA_P-wetherbeei_contig6751.2.1 vs. uniprot
Match: A0A812JNW8_9DINO (DNAH6 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812JNW8_9DINO)

HSP 1 Score: 95.1 bits (235), Expect = 2.680e-21
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 ILQNGIKITNEPPKGLRANLTRTLQDLGDAEYRRCTRPEVFQPLVYALAFFNALVLERRKFGAVG 195
            +LQ GIKITNEPPKGLRANLTRT QD+    Y  CT+P  F+ L+YALAFF+A +LERRKFG +G
Sbjct:  931 VLQGGIKITNEPPKGLRANLTRTFQDITPEVYEGCTKPREFKKLLYALAFFHAAILERRKFGPIG 995
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BLAST of mRNA_P-wetherbeei_contig6751.2.1 vs. uniprot
Match: A0A0P1A822_PLAHL (Dynein heavy chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A822_PLAHL)

HSP 1 Score: 95.1 bits (235), Expect = 2.700e-21
Identity = 42/65 (64.62%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 ILQNGIKITNEPPKGLRANLTRTLQDLGDAEYRRCTRPEVFQPLVYALAFFNALVLERRKFGAVG 195
            ILQNGIKITNEPP+G++ANL RT +D+ +A+Y  CT+P  ++ L++ALAF+NA+ LERRKFGAVG
Sbjct: 3567 ILQNGIKITNEPPRGIKANLGRTFRDIKEADYEACTKPREYKKLLFALAFYNAVCLERRKFGAVG 3631
[Close]
BLAST of mRNA_P-wetherbeei_contig6751.2.1 vs. uniprot
Match: A0A7S1CKD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKD2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.590e-21
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 ILQNGIKITNEPPKGLRANLTRTLQDLGDAEYRRCTRPEVFQPLVYALAFFNALVLERRKFGAVG 195
            +LQN IK+T EPP+GL+AN+ RT Q+L DAEY  C +P  F+  ++A AF++AL+LERRKFGA+G
Sbjct:   34 VLQNSIKLTQEPPRGLKANIMRTFQNLTDAEYEGCEKPRPFKKFLFATAFYHALILERRKFGAIG 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6751.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3HT09_9STRA6.630e-2366.15Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A5D6XHL3_9STRA1.060e-2169.23Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A024U9I2_9STRA1.060e-2167.69Uncharacterized protein n=15 Tax=Aphanomyces TaxID... [more]
A0A225WHR1_9STRA1.450e-2167.69Dynein heavy chain n=1 Tax=Phytophthora megakarya ... [more]
A0A421GEV9_9STRA1.450e-2167.69Bromo domain-containing protein n=19 Tax=Phytophth... [more]
A0A3F2RXH9_9STRA1.450e-2167.69Bromo domain-containing protein n=8 Tax=Peronospor... [more]
A0A812PC02_SYMMI1.970e-2166.15DNAH6 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A812JNW8_9DINO2.680e-2167.69DNAH6 protein n=1 Tax=Symbiodinium sp. CCMP2456 Ta... [more]
A0A0P1A822_PLAHL2.700e-2164.62Dynein heavy chain n=1 Tax=Plasmopara halstedii Ta... [more]
A0A7S1CKD2_9STRA3.590e-2158.46Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6751contigP-wetherbeei_contig6751:1862..2056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008868888.1
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N2,Dynein_heavy,MT
Model size195
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.74e-22
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size195
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186934.7340512-CDS-P-wetherbeei_contig6751:1861..20561683186934.7340512-CDS-P-wetherbeei_contig6751:1861..2056Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6751 1862..2056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6751.2.1prot_P-wetherbeei_contig6751.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6751 1862..2056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6751.2.1

>prot_P-wetherbeei_contig6751.2.1 ID=prot_P-wetherbeei_contig6751.2.1|Name=mRNA_P-wetherbeei_contig6751.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
ILQNGIKITNEPPKGLRANLTRTLQDLGDAEYRRCTRPEVFQPLVYALAF
FNALVLERRKFGAVG
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mRNA from alignment at P-wetherbeei_contig6751:1862..2056-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6751.2.1 ID=mRNA_P-wetherbeei_contig6751.2.1|Name=mRNA_P-wetherbeei_contig6751.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig6751:1862..2056- (Phaeothamnion wetherbeei SAG_119_79)
ATCCTGCAGAACGGCATCAAGATCACCAACGAGCCGCCCAAGGGGCTGCG
CGCCAACCTGACGCGCACTCTGCAGGACCTCGGGGACGCCGAGTACCGGC
GGTGCACGCGGCCAGAGGTGTTCCAGCCGCTCGTCTATGCGCTGGCTTTC
TTCAATGCGTTGGTGCTCGAAAGAAGGAAGTTTGGCGCCGTCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6751:1862..2056-

>mRNA_P-wetherbeei_contig6751.2.1 ID=mRNA_P-wetherbeei_contig6751.2.1|Name=mRNA_P-wetherbeei_contig6751.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig6751:1862..2056- (Phaeothamnion wetherbeei SAG_119_79)
ATCCTGCAGAACGGCATCAAGATCACCAACGAGCCGCCCAAGGGGCTGCG
CGCCAACCTGACGCGCACTCTGCAGGACCTCGGGGACGCCGAGTACCGGC
GGTGCACGCGGCCAGAGGTGTTCCAGCCGCTCGTCTATGCGCTGGCTTTC
TTCAATGCGTTGGTGCTCGAAAGAAGGAAGTTTGGCGCCGTCGGC
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