mRNA_P-wetherbeei_contig6749.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6749.2.1
Unique NamemRNA_P-wetherbeei_contig6749.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6749.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6749contigP-wetherbeei_contig6749:1359..2211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size690
Hectar predicted targeting categorymitochondrion
Exons3
Cds size687
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186934.3648684-CDS-P-wetherbeei_contig6749:1359..14381683186934.3648684-CDS-P-wetherbeei_contig6749:1359..1438Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6749 1360..1438 -
1683186934.374742-CDS-P-wetherbeei_contig6749:1589..18351683186934.374742-CDS-P-wetherbeei_contig6749:1589..1835Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6749 1590..1835 -
1683186934.3841965-CDS-P-wetherbeei_contig6749:1849..22111683186934.3841965-CDS-P-wetherbeei_contig6749:1849..2211Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6749 1850..2211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6749.2.1prot_P-wetherbeei_contig6749.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6749 1360..2211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6749.2.1

>prot_P-wetherbeei_contig6749.2.1 ID=prot_P-wetherbeei_contig6749.2.1|Name=mRNA_P-wetherbeei_contig6749.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=229bp
KRTGFCAVFGRWTTSTAILWAWRGPRHRDSATAPRSREARSPSWRRALFP
QGKAASSRRRRAQPRRKRRRMTAWGAAASFRRRRHASRRPPLFRSRGVLS
CLLRRRFRASCRANARRATPNAVLEASNSECSVMAVDDAVTNRLPTASSP
PLPPRMEPATVPSDDAPDICGESEEPGATDEIQPLPESPVFNLAVEASPA
FLRPVAPKSDPGACRERPSSAATAATAAA
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mRNA from alignment at P-wetherbeei_contig6749:1359..2211-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6749.2.1 ID=mRNA_P-wetherbeei_contig6749.2.1|Name=mRNA_P-wetherbeei_contig6749.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=853bp|location=Sequence derived from alignment at P-wetherbeei_contig6749:1359..2211- (Phaeothamnion wetherbeei SAG_119_79)
AAGAGAACGGGCTTCTGCGCGGTCTTTGGACGATGGACGACGTCGACAGC
AATTTTGTGGGCCTGGCGCGGTCCCCGGCACCGCGACTCGGCGACCGCTC
CTCGCTCTCGGGAAGCAAGAAGCCCTTCTTGGAGGCGAGCGCTGTTTCCT
CAGGGGAAGGCAGCGAGCAGCAGACGCCGGAGGGCACAACCCCGAAGGAA
GCGAAGGAGGATGACGGCATGGGGCGCCGCCGCTTCATTCCGACGCCGCA
GGCACGCTTCACGCCGTCCGCCGCTGTTTCGCAGCAGAGGAGTCCTCTCC
TGCCTTTTACGCCGTCGCTTCCGGGCCTCGTGCCGCGCCAACGCACGCCG
AGCGACACCAAAGCTGCAGCGTTGAGCGCAGTTCTCGAGGCGTCGAATTC
GGAGTGTTCAGTGATGGCGGTTGACGACGCGGTGACGAACCGTCTTCCGA
CGGCGTCCTCGCCACCGCTGCCGCCGAGAATGGAACCGGCCACTGTTCCC
TCCGACGATGCGCCAGACATCTGCGGGGAGAGCGAGGAGCCCGGCGCTAC
GGACGAGATTCAACCTCTCCCGGAATCGCCCGTTTTCAACCTGGCTGTCG
AAGCATCTCCTGCCTTTCTGAGGTGGGCTACTCTCATTTGCGGAGAGTAT
TATGGCTTCCGGTTTTCGGCTAGTTTTTAGTTCGTATCAACATCTTGGTC
CGCGTTCATTCACAGGACACGTTTCCGTTTTCCTCTTCTTTCTTCCTCCT
TCCTTTTCGCCAACATCCACCAGGCCGGTGGCCCCGAAAAGCGACCCCGG
CGCCTGCCGCGAGCGGCCATCCTCGGCGGCGACAGCGGCGACGGCAGCAG
CGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6749:1359..2211-

>mRNA_P-wetherbeei_contig6749.2.1 ID=mRNA_P-wetherbeei_contig6749.2.1|Name=mRNA_P-wetherbeei_contig6749.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=687bp|location=Sequence derived from alignment at P-wetherbeei_contig6749:1359..2211- (Phaeothamnion wetherbeei SAG_119_79)
AAGAGAACGGGCTTCTGCGCGGTCTTTGGACGATGGACGACGTCGACAGC
AATTTTGTGGGCCTGGCGCGGTCCCCGGCACCGCGACTCGGCGACCGCTC
CTCGCTCTCGGGAAGCAAGAAGCCCTTCTTGGAGGCGAGCGCTGTTTCCT
CAGGGGAAGGCAGCGAGCAGCAGACGCCGGAGGGCACAACCCCGAAGGAA
GCGAAGGAGGATGACGGCATGGGGCGCCGCCGCTTCATTCCGACGCCGCA
GGCACGCTTCACGCCGTCCGCCGCTGTTTCGCAGCAGAGGAGTCCTCTCC
TGCCTTTTACGCCGTCGCTTCCGGGCCTCGTGCCGCGCCAACGCACGCCG
AGCGACACCAAACGCAGTTCTCGAGGCGTCGAATTCGGAGTGTTCAGTGA
TGGCGGTTGACGACGCGGTGACGAACCGTCTTCCGACGGCGTCCTCGCCA
CCGCTGCCGCCGAGAATGGAACCGGCCACTGTTCCCTCCGACGATGCGCC
AGACATCTGCGGGGAGAGCGAGGAGCCCGGCGCTACGGACGAGATTCAAC
CTCTCCCGGAATCGCCCGTTTTCAACCTGGCTGTCGAAGCATCTCCTGCC
TTTCTGAGGCCGGTGGCCCCGAAAAGCGACCCCGGCGCCTGCCGCGAGCG
GCCATCCTCGGCGGCGACAGCGGCGACGGCAGCAGCG
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