mRNA_P-wetherbeei_contig6741.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6741.2.1
Unique NamemRNA_P-wetherbeei_contig6741.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6741.2.1 vs. uniprot
Match: C5L3I4_PERM5 (Uncharacterized protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L3I4_PERM5)

HSP 1 Score: 69.3 bits (168), Expect = 3.060e-12
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 EARQAEETSFAYVYCPEPDQTEHAVGFAHPDVGAVLHRLDAELERLWRATEGLRGRKV--VVTADHG 195
            E   ++ET+F Y+YCPEPD TEHA+G   P +G  L++L+ +LE LW A     G  V  VV+ADHG
Sbjct:  211 EKTDSKETTFTYIYCPEPDTTEHALGIDDPAIGIKLNQLNDQLEELWAALSRTSGASVRMVVSADHG 277
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6741.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
C5L3I4_PERM53.060e-1249.25Uncharacterized protein n=1 Tax=Perkinsus marinus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6741contigP-wetherbeei_contig6741:2930..3124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog31954.BPSP_1109
PFAMsPhosphodiest
Model size195
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000136
EggNOG OGsCOG1524@1|root,COG1524@2|Bacteria,2GISU@201174|Actinobacteria,4CZCK@85004|Bifidobacteriales
DescriptionType I phosphodiesterase / nucleotide pyrophosphatase
Cds size195
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.9123037-CDS-P-wetherbeei_contig6741:2929..31241683186933.9123037-CDS-P-wetherbeei_contig6741:2929..3124Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6741 2930..3124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6741.2.1prot_P-wetherbeei_contig6741.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6741 2930..3124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6741.2.1

>prot_P-wetherbeei_contig6741.2.1 ID=prot_P-wetherbeei_contig6741.2.1|Name=mRNA_P-wetherbeei_contig6741.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
EARQAEETSFAYVYCPEPDQTEHAVGFAHPDVGAVLHRLDAELERLWRAT
EGLRGRKVVVTADHG
back to top

mRNA from alignment at P-wetherbeei_contig6741:2930..3124+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6741.2.1 ID=mRNA_P-wetherbeei_contig6741.2.1|Name=mRNA_P-wetherbeei_contig6741.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig6741:2930..3124+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGCCCGGCAGGCCGAGGAGACGTCCTTCGCCTATGTGTACTGCCCCGA
GCCCGACCAGACGGAGCACGCTGTCGGCTTTGCGCATCCGGACGTAGGTG
CCGTGCTGCATCGCCTCGATGCCGAGCTGGAGCGGCTGTGGCGAGCCACG
GAGGGGCTGCGGGGTCGCAAGGTCGTGGTGACGGCCGACCACGGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6741:2930..3124+

>mRNA_P-wetherbeei_contig6741.2.1 ID=mRNA_P-wetherbeei_contig6741.2.1|Name=mRNA_P-wetherbeei_contig6741.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig6741:2930..3124+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGCCCGGCAGGCCGAGGAGACGTCCTTCGCCTATGTGTACTGCCCCGA
GCCCGACCAGACGGAGCACGCTGTCGGCTTTGCGCATCCGGACGTAGGTG
CCGTGCTGCATCGCCTCGATGCCGAGCTGGAGCGGCTGTGGCGAGCCACG
GAGGGGCTGCGGGGTCGCAAGGTCGTGGTGACGGCCGACCACGGT
back to top