mRNA_P-wetherbeei_contig6741.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6741.1.1
Unique NamemRNA_P-wetherbeei_contig6741.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6741.1.1 vs. uniprot
Match: W2KDC1_PHYPR (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KDC1_PHYPR)

HSP 1 Score: 56.6 bits (135), Expect = 8.740e-7
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = -3 
Query:  383 QKSEQRPLRSQSPKRVGSFQRPPRVGPPHSMPAGP*TNI 499
            QKSEQRPLRSQSP  VGS   PPRVGPP+S P GP T +
Sbjct:    7 QKSEQRPLRSQSPNLVGSLSLPPRVGPPYSAPDGPITTV 45
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BLAST of mRNA_P-wetherbeei_contig6741.1.1 vs. uniprot
Match: A0A7S3GRS8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRS8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.980e-5
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:  345 CGPVDEDE--DEMEQMFVQGPAGMEWGGPTRGGR 440
            CGP D+    DEME+MF++GPAG+EW GPTRGG+
Sbjct:   60 CGPEDDPNELDEMEEMFIEGPAGLEWNGPTRGGK 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6741.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
W2KDC1_PHYPR8.740e-771.79Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A7S3GRS8_9STRA1.980e-564.71Succinate dehydrogenase assembly factor 4, mitocho... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6741contigP-wetherbeei_contig6741:511..1176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FM82
PFAMsDUF1674
Model size666
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.47e-10
EggNOG OGs2CZB4@1|root,2S9G4@2759|Eukaryota
DescriptionProtein of unknown function (DUF1674)
Cds size357
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.860627-UTR-P-wetherbeei_contig6741:510..6761683186933.860627-UTR-P-wetherbeei_contig6741:510..676Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6741 511..676 -
1683186933.8824048-UTR-P-wetherbeei_contig6741:1033..11761683186933.8824048-UTR-P-wetherbeei_contig6741:1033..1176Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6741 1034..1176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.8726132-CDS-P-wetherbeei_contig6741:676..10331683186933.8726132-CDS-P-wetherbeei_contig6741:676..1033Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6741 677..1033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6741.1.1prot_P-wetherbeei_contig6741.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6741 677..1033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6741.1.1

>prot_P-wetherbeei_contig6741.1.1 ID=prot_P-wetherbeei_contig6741.1.1|Name=mRNA_P-wetherbeei_contig6741.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
MIRTLLLRSALPTAVSRFTRALPPLAARWASDGPRRPAEAAAIPRETPEP
PVVRVDRVVLEKTKTDACGPVDEDEDEMEQMFVQGPAGMEWGGPTRGGRW
KEPTRFGDWERKGRCSDF*
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mRNA from alignment at P-wetherbeei_contig6741:511..1176-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6741.1.1 ID=mRNA_P-wetherbeei_contig6741.1.1|Name=mRNA_P-wetherbeei_contig6741.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=666bp|location=Sequence derived from alignment at P-wetherbeei_contig6741:511..1176- (Phaeothamnion wetherbeei SAG_119_79)
AAGGTGTTCTTTTCCCATCGTCGAAACCGCCTTCCACAACGTTGGCGAAG
CAAAACCGGCTCCTTCGTAGTCTGACAAAGTCCTGCAGTGAGTGAGCGAG
AGACTGAAGAAACGCGAGAGATTTAAGCACTGCACACGGCGTCATGATTC
GAACATTGCTGCTGCGGAGCGCGCTGCCGACTGCGGTCTCGCGATTCACG
CGAGCGCTGCCACCTCTCGCTGCGAGGTGGGCCTCTGACGGGCCTCGGCG
TCCCGCCGAGGCGGCCGCGATCCCTCGCGAGACGCCTGAGCCTCCGGTGG
TCAGGGTTGACAGAGTGGTTTTGGAAAAAACCAAGACTGATGCGTGCGGG
CCTGTCGACGAAGACGAAGACGAGATGGAGCAAATGTTCGTTCAAGGGCC
TGCCGGCATGGAATGGGGTGGGCCGACCCGCGGCGGGCGCTGGAAGGAGC
CGACGCGCTTCGGCGACTGGGAGCGCAAGGGACGCTGCTCCGACTTTTGA
CGGAGGAGAACGGCTGGATGAGGGAGGAAACAAGGATAAAGCAAATGCAG
GCAAGAGGAAGCATTGAGTAGTTTGCAAAGATGGGAGCGCGAGACAGGCC
GTGCTGCGAAGTAGTAGGAGCCCTACGGAAAGTTCAGGCTGTAAATAAGA
TGTTTGGAAAATAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6741:511..1176-

>mRNA_P-wetherbeei_contig6741.1.1 ID=mRNA_P-wetherbeei_contig6741.1.1|Name=mRNA_P-wetherbeei_contig6741.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig6741:511..1176- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTCGAACATTGCTGCTGCGGAGCGCGCTGCCGACTGCGGTCTCGCG
ATTCACGCGAGCGCTGCCACCTCTCGCTGCGAGGTGGGCCTCTGACGGGC
CTCGGCGTCCCGCCGAGGCGGCCGCGATCCCTCGCGAGACGCCTGAGCCT
CCGGTGGTCAGGGTTGACAGAGTGGTTTTGGAAAAAACCAAGACTGATGC
GTGCGGGCCTGTCGACGAAGACGAAGACGAGATGGAGCAAATGTTCGTTC
AAGGGCCTGCCGGCATGGAATGGGGTGGGCCGACCCGCGGCGGGCGCTGG
AAGGAGCCGACGCGCTTCGGCGACTGGGAGCGCAAGGGACGCTGCTCCGA
CTTTTGA
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