mRNA_P-wetherbeei_contig6740.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6740.1.2
Unique NamemRNA_P-wetherbeei_contig6740.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6740.1.2 vs. uniprot
Match: A0A482S130_9ARCH (Pyridoxal-phosphate dependent enzyme n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S130_9ARCH)

HSP 1 Score: 131 bits (330), Expect = 1.510e-35
Identity = 66/129 (51.16%), Postives = 91/129 (70.54%), Query Frame = 1
Query:    1 GLPRTTKIIAIGVCDSPAYFYHHIDDIAASMGVPVSV-GHAEDWLEVWHGSGEGYGVSTAEELQYLADVARTTGVLLDPVYSGKKALHSFVHKVVAAEPERFRGRRILFWHTGGALGMFDKAEQLTGIL 384
            G+   T++  IGVCDSP YFY HI ++A ++GV ++  G  E W +++ G G GY  ST EELQ+LAD++ +TG+LLDPVYSGK A H  +HK++  E  R +G+R+LF HTGG LG++DK  QL  IL
Sbjct:  108 GVSGRTQLHCIGVCDSPQYFYEHIREVATTLGVDLAQHGEMETWCKIYDGQGIGYARSTVEELQFLADLSSSTGLLLDPVYSGK-AFHFMMHKLLPTEVFR-QGQRVLFLHTGGTLGLYDKETQLLPIL 234          
BLAST of mRNA_P-wetherbeei_contig6740.1.2 vs. uniprot
Match: A0A7S3GRW1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRW1_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.040e-32
Identity = 60/128 (46.88%), Postives = 91/128 (71.09%), Query Frame = 1
Query:   13 TTKIIAIGVCDSPAYFYHHIDDIAASMGVPVS-VGHAEDWLEVWHGSGEGYGVSTAEELQYLADVARTTGVLLDPVYSGKKALHSFVHKVVAAEPER---FRGRRILFWHTGGALGMFDKAEQLTGIL 384
            TT++ A+GVCDSP YFYHHI + AA +G+    +G  ED L ++ G G+GY  ST +EL+++  VA+TTG++LDPVYSGK  L+ FVHKV+    ++     G+++L+ HTGG +G++DK +Q+  +L
Sbjct:  246 TTQVHAVGVCDSPEYFYHHIAETAAELGLTTDQLGPVEDLLHLYAGEGQGYARSTDDELEFIIKVAQTTGIILDPVYSGK-GLYHFVHKVLPDNAKKAAFLPGQKVLYIHTGGTVGLYDKEDQVVKLL 372          
BLAST of mRNA_P-wetherbeei_contig6740.1.2 vs. uniprot
Match: A0A7S2WWB8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWB8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.010e-31
Identity = 65/118 (55.08%), Postives = 77/118 (65.25%), Query Frame = 1
Query:   10 RTTKIIAIGVCDSPAYFYHHIDDIAASMGVPVSVGHAEDWLEVWHGSGEGYGVSTAEELQYLADVARTTGVLLDPVYSGKKALHSFVHKVVAAEPERFRGRRILFWHTGGALGMFDKA 363
            R TK+ A+GVCDSP+YFY  +DD     G+  S+  +E WL V  G G GY VST EEL  +  V  TTGVLLDPVYSGK AL+ F  +     PE F G+ ILFWHTGG  GM+DKA
Sbjct:  267 RGTKVHAVGVCDSPSYFYKFVDD-EILPGIGHSLPCSESWLRVIQGRGRGYAVSTPEELDIIKRVCETTGVLLDPVYSGK-ALYKFC-ETAKGSPEEFAGKSILFWHTGGGFGMYDKA 381          
BLAST of mRNA_P-wetherbeei_contig6740.1.2 vs. uniprot
Match: K0RA64_THAOC (PALP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RA64_THAOC)

HSP 1 Score: 121 bits (304), Expect = 2.570e-30
Identity = 63/119 (52.94%), Postives = 84/119 (70.59%), Query Frame = 1
Query:   31 IGVCDSPAYFYHHIDDIAASMGVP-VSVGHAEDWL----EVWHGSGEGYGVSTAEELQYLADVARTTGVLLDPVYSGKKALHSFVHKVVAAEPERFRGRRILFWHTGGALGMFDKAEQL 372
            IGVCDSP YFY  I  IA +MG+  +S    ED++    +V HG G GY VS+ EEL++++  A  TG+ LDPVYSGK AL+ F+ KV+  EPE++RG++ILFWHTGGALG ++K   L
Sbjct:  270 IGVCDSPDYFYTTIASIADAMGLKKMSHSSTEDFIRSIIKVHHGKGRGYAVSSDEELRFISQFAVDTGICLDPVYSGK-ALYHFMTKVLEEEPEKYRGQKILFWHTGGALGTYEKGNDL 387          
BLAST of mRNA_P-wetherbeei_contig6740.1.2 vs. uniprot
Match: A0A7S1CYU7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYU7_CYCTE)

HSP 1 Score: 119 bits (298), Expect = 5.840e-30
Identity = 58/123 (47.15%), Postives = 79/123 (64.23%), Query Frame = 1
Query:   19 KIIAIGVCDSPAYFYHHIDDIAASMGVPVSVGHAEDWLE----VWHGSGEGYGVSTAEELQYLADVARTTGVLLDPVYSGKKALHSFVHKVVAAEPERFRGRRILFWHTGGALGMFDKAEQLT 375
            ++ A+GVCD P YFY ++  IA  MG+    G   D+++       G G GY  ST EEL++++  +  TG+ LDPVYSGK   H FV KV+ A P+ +RG+ ILFWHTGGALGM+DK   L+
Sbjct:  197 QVHAVGVCDDPDYFYDYVAGIAEEMGLESDEGGTLDFIQQHMTAHQGKGLGYASSTPEELEFVSQFSLETGIALDPVYSGKALFH-FVTKVLTANPDDYRGKNILFWHTGGALGMYDKGNDLS 318          
BLAST of mRNA_P-wetherbeei_contig6740.1.2 vs. uniprot
Match: B7GAJ9_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAJ9_PHATC)

HSP 1 Score: 118 bits (296), Expect = 8.770e-30
Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = 1
Query:   19 KIIAIGVCDSPAYFYHHIDDIAASMGVP-VSVGHAEDW-----LEVWHGSGEGYGVSTAEELQYLADVARTTGVLLDPVYSGKKALHSFVHKVVAAEPERFRGRRILFWHTGGALGMFDKAEQL 372
            K++A+GVCD P YFYHH+  IA  MG+  +S G + +      + V  G G GY +ST EEL++ A  AR TG++LDPVYSGK AL +FV +++  +P  FR + ILFWHTGGALG++DK   L
Sbjct:  206 KVMAVGVCDDPDYFYHHVASIADQMGLQNLSGGMSTEAFVRQNMNVLQGKGCGYAISTPEELEFAAHFARDTGIVLDPVYSGK-ALFAFV-RLMEEDPACFRDKNILFWHTGGALGLYDKVPSL 327          
BLAST of mRNA_P-wetherbeei_contig6740.1.2 vs. uniprot
Match: A0A7S4VX31_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VX31_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.840e-28
Identity = 61/129 (47.29%), Postives = 79/129 (61.24%), Query Frame = 1
Query:   10 RTTKIIAIGVCDSPAYFYHHIDDIAASMGVPVSVGHAEDWLE--------VWHGSGEGYGVSTAEELQYLADVARTTGVLLDPVYSGKKALHSFVHKVVAAEPERFRGRRILFWHTGGALGMFDKAEQL 372
            +  KI A+GVCD+P YFY+ +  IA  MG  +    +   LE        V  G G GY  ST EEL +    A  TG++LDPVYSGK AL+ FV  V+  +PE FR   +LFWHTGGALGM++K+E+L
Sbjct:  289 KAPKIHAVGVCDNPDYFYNEVSKIANEMGFALPTSSSCTTLEELIHNHLIVHQGKGLGYARSTTEELNFCTQFAIETGIVLDPVYSGK-ALYHFVTTVLEEDPEAFRDSNVLFWHTGGALGMYEKSEEL 416          
BLAST of mRNA_P-wetherbeei_contig6740.1.2 vs. uniprot
Match: B8BWK9_THAPS (PALP domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWK9_THAPS)

HSP 1 Score: 114 bits (284), Expect = 1.800e-27
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 1
Query:   19 KIIAIGVCDSPAYFYHHIDDIAASMGVPV-SVGHAEDWLE----VWHGSGEGYGVSTAEELQYLADVARTTGVLLDPVYSGKKALHSFVHKVVAAEPERFRGRRILFWHTGGALGMFDKAEQL 372
            K+ A+GVCDSP+YFY+ I  +A  MG+ + S    E ++     V  G G+GY  ST EEL ++   +  TG+ LDPVYSGK AL+ F+ KVV  +PE +R + ILFWHTGGALG++DK + L
Sbjct:  263 KVHAVGVCDSPSYFYNTITTMADGMGISLDSDTTTEQFVRNSVIVHQGKGQGYASSTDEELDFILLFSLETGISLDPVYSGK-ALYHFLKKVVEDDPEAYRDKSILFWHTGGALGIYDKGDDL 384          
BLAST of mRNA_P-wetherbeei_contig6740.1.2 vs. uniprot
Match: X0U1L8_9ZZZZ (PALP domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0U1L8_9ZZZZ)

HSP 1 Score: 109 bits (272), Expect = 1.990e-27
Identity = 64/137 (46.72%), Postives = 83/137 (60.58%), Query Frame = 1
Query:    4 LPRTTKIIAIGVCDSPAYFYHHIDDIAASMGV------PVSVGHAEDWLE----VWHGSGEGYGVSTAEELQYLADVARTTGVLLDPVYSGKKALHSFVHKVVAAEPERFRGRRILFWHTGGALGMFDKAEQLTGIL 384
            LPR   I A+GVCD P YFY+ I  IA  MG+      P S    ED++     V  G G GY  STAEEL ++   A  TG++LDPVYSGK A++ F+ K +   P+ +R  RI+FWHTGG+LG ++K E LT  L
Sbjct:   53 LPR---IHAVGVCDDPDYFYYTIASIAREMGLDLSSLLPTSEISMEDFVRDHMFVHQGKGLGYASSTAEELDFIVKFALETGIVLDPVYSGK-AMYQFM-KEMQENPDSYRNSRIVFWHTGGSLGNYEKIESLTATL 184          
BLAST of mRNA_P-wetherbeei_contig6740.1.2 vs. uniprot
Match: A0A7S1BJI2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BJI2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 3.630e-27
Identity = 58/124 (46.77%), Postives = 79/124 (63.71%), Query Frame = 1
Query:   19 KIIAIGVCDSPAYFYHHIDDIAASMGV--PVS----VGHAEDWLEVWHGSGEGYGVSTAEELQYLADVARTTGVLLDPVYSGKKALHSFVHKVVAAEPERFRGRRILFWHTGGALGMFDKAEQL 372
            +I A+GVCD+P YFY  +  I   MG   PV+           L V  G G GY +ST+EEL ++  VA TTG++LDPVY+GK ALH F++ VV  + + F G+ +L+WHTGG LG+FDK  +L
Sbjct:  282 QIHAVGVCDNPEYFYKTVTSIITDMGYVSPVTKEDIANRVRRILVVHQGKGRGYAISTSEELNFVKKVAATTGLVLDPVYTGK-ALHHFLNVVVEQDKKLFEGKTVLYWHTGGGLGVFDKVPEL 404          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6740.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482S130_9ARCH1.510e-3551.16Pyridoxal-phosphate dependent enzyme n=1 Tax=archa... [more]
A0A7S3GRW1_9STRA4.040e-3246.88Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2WWB8_9STRA1.010e-3155.08Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
K0RA64_THAOC2.570e-3052.94PALP domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7S1CYU7_CYCTE5.840e-3047.15Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B7GAJ9_PHATC8.770e-3050.00Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S4VX31_9STRA3.840e-2847.29Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
B8BWK9_THAPS1.800e-2748.78PALP domain-containing protein n=1 Tax=Thalassiosi... [more]
X0U1L8_9ZZZZ1.990e-2746.72PALP domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S1BJI2_9STRA3.630e-2746.77Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6740contigP-wetherbeei_contig6740:29..673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159749.K0RA64
PFAMsPALP
Model size384
Max annot lvl2836|Bacillariophyta
KEGG rclassRC00382
KEGG koko:K05396
KEGG ReactionR01874
KEGG Pathwayko00270,map00270
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.22e-31
EggNOG OGsCOG2515@1|root,2QPS1@2759|Eukaryota,2XAAT@2836|Bacillariophyta
EC4.4.1.15
DescriptionPyridoxal-phosphate dependent enzyme
Cds size384
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.7392879-CDS-P-wetherbeei_contig6740:28..2771683186933.7392879-CDS-P-wetherbeei_contig6740:28..277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6740 29..277 +
1683186933.757797-CDS-P-wetherbeei_contig6740:538..6731683186933.757797-CDS-P-wetherbeei_contig6740:538..673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6740 539..673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6740.1.2prot_P-wetherbeei_contig6740.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6740 29..673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6740.1.2

>prot_P-wetherbeei_contig6740.1.2 ID=prot_P-wetherbeei_contig6740.1.2|Name=mRNA_P-wetherbeei_contig6740.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
GLPRTTKIIAIGVCDSPAYFYHHIDDIAASMGVPVSVGHAEDWLEVWHGS
GEGYGVSTAEELQYLADVARTTGVLLDPVYSGKKALHSFVHKVVAAEPER
FRGRRILFWHTGGALGMFDKAEQLTGIL
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mRNA from alignment at P-wetherbeei_contig6740:29..673+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6740.1.2 ID=mRNA_P-wetherbeei_contig6740.1.2|Name=mRNA_P-wetherbeei_contig6740.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=645bp|location=Sequence derived from alignment at P-wetherbeei_contig6740:29..673+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCTGCCGCGGACCACCAAAATTATTGCGATTGGAGTCTGTGACAGCCC CGCTTACTTTTACCACCACATCGACGACATTGCTGCTTCAATGGGAGTGC CGGTGTCCGTCGGGCATGCGGAGGATTGGCTTGAGGTGTGGCACGGCTCC GGGGAAGGTTACGGCGTGTCGACGGCGGAGGAGCTGCAGTACCTGGCGGA CGTCGCGCGGACGACCGGCGTGCTGCTGGATCCGGTTTACTCTGGCAAGG TGAGTCCCAGGCCCTGCCTGCTGACATTTCGTTCGTTTTTAACCCTTTGA GGGCGGCGTGGTGGGTTCCCTGTTTGCCGGTTCGCGTCTGCCTTTTTTTC CTGGCCGAGCCGAGCAACGGCAGAGGCGATGGTGAGGACAGCTGCGGCGG CGGCCTCGCGTTCTTACGATGTCGTGAACATGGATGCTGTTGCAGCCAAT GCATCCTGACCAACCGAAACCGTTATATTCCTCTTTTTGATTCTGTTTCA TCCTTTTGAGAAGGCCCTTCACAGCTTTGTGCACAAGGTGGTGGCGGCGG AGCCGGAACGCTTTCGCGGCCGCCGAATCCTCTTCTGGCATACTGGCGGG GCCCTCGGGATGTTTGACAAGGCGGAGCAGCTGACGGGCATCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6740:29..673+

>mRNA_P-wetherbeei_contig6740.1.2 ID=mRNA_P-wetherbeei_contig6740.1.2|Name=mRNA_P-wetherbeei_contig6740.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig6740:29..673+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCTGCCGCGGACCACCAAAATTATTGCGATTGGAGTCTGTGACAGCCC
CGCTTACTTTTACCACCACATCGACGACATTGCTGCTTCAATGGGAGTGC
CGGTGTCCGTCGGGCATGCGGAGGATTGGCTTGAGGTGTGGCACGGCTCC
GGGGAAGGTTACGGCGTGTCGACGGCGGAGGAGCTGCAGTACCTGGCGGA
CGTCGCGCGGACGACCGGCGTGCTGCTGGATCCGGTTTACTCTGGCAAGA
AGGCCCTTCACAGCTTTGTGCACAAGGTGGTGGCGGCGGAGCCGGAACGC
TTTCGCGGCCGCCGAATCCTCTTCTGGCATACTGGCGGGGCCCTCGGGAT
GTTTGACAAGGCGGAGCAGCTGACGGGCATCCTC
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