mRNA_P-wetherbeei_contig674.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig674.2.1
Unique NamemRNA_P-wetherbeei_contig674.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig674.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig674contigP-wetherbeei_contig674:3502..5880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1083
Hectar predicted targeting categoryother localisation
Exons7
Cds size1056
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig674.2.1prot_P-wetherbeei_contig674.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig674 3502..5854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.6327212-CDS-P-wetherbeei_contig674:3501..36871683186933.6327212-CDS-P-wetherbeei_contig674:3501..3687Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig674 3502..3687 -
1683186933.6444411-CDS-P-wetherbeei_contig674:3807..38741683186933.6444411-CDS-P-wetherbeei_contig674:3807..3874Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig674 3808..3874 -
1683186933.6554193-CDS-P-wetherbeei_contig674:4054..42001683186933.6554193-CDS-P-wetherbeei_contig674:4054..4200Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig674 4055..4200 -
1683186933.665881-CDS-P-wetherbeei_contig674:4483..45491683186933.665881-CDS-P-wetherbeei_contig674:4483..4549Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig674 4484..4549 -
1683186933.6764104-CDS-P-wetherbeei_contig674:4777..49821683186933.6764104-CDS-P-wetherbeei_contig674:4777..4982Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig674 4778..4982 -
1683186933.6864805-CDS-P-wetherbeei_contig674:5254..55561683186933.6864805-CDS-P-wetherbeei_contig674:5254..5556Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig674 5255..5556 -
1683186933.6988873-CDS-P-wetherbeei_contig674:5770..58541683186933.6988873-CDS-P-wetherbeei_contig674:5770..5854Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig674 5771..5854 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.7081943-UTR-P-wetherbeei_contig674:5854..58801683186933.7081943-UTR-P-wetherbeei_contig674:5854..5880Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig674 5855..5880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig674.2.1

>prot_P-wetherbeei_contig674.2.1 ID=prot_P-wetherbeei_contig674.2.1|Name=mRNA_P-wetherbeei_contig674.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=352bp
MFGDDPALGRLLRGCSRLQTLRLCNHSQLTLRRGLEGVSLPCLAEFDLWG
CPAVDLAALADLAAATCCPMLTRVRLAAAASFSELTVSGRGGARGGKAER
PKLTSAAGGGAAASERVRTALKALASRTRYAQMSPDGGGLEPVPHWRHYH
AVLAFGRRRRRERRAAATIWRAWEDHERRRASRLQNSARSIVDFLRRTCC
PSGEKKTLLRKRAAVRVLQALARARHTRRRFEAAASVQALWRGRSTRRVM
TRVLVFWHAAVVIQCSYRGHAVRRDLRILDKVHTLLRARQALGPGCFAPA
VRYGHDGGAGEWSLAAARAQVTAAVAALRAELAEAHAVATRQRKKRDERR
LG
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mRNA from alignment at P-wetherbeei_contig674:3502..5880-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig674.2.1 ID=mRNA_P-wetherbeei_contig674.2.1|Name=mRNA_P-wetherbeei_contig674.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2379bp|location=Sequence derived from alignment at P-wetherbeei_contig674:3502..5880- (Phaeothamnion wetherbeei SAG_119_79)
AGGGCGGCGAACCGTGCGGGCCTCCAATGTTTGGTGACGATCCGGCACTT
GGGCGGCTGCTGCGGGGTTGCTCGCGCCTCCAAACGCTGCGGCTCTGCAA
CCATTCACAGGTACACGTAAGGTGCCTCACCACCTCAACGGCGGCAAAGT
TGCTCGCTGCGGTTGATTTTGTTCTGTGGTGCTTGTTCTCCCCCTATCTC
AACCATTTTTGGCGTACCTGCCTGTCTGTTTTCCGTACTTTCTTTCTACC
CGTCGCTTGCATGTTTGCGGCGGCTGCGATGGCAACGGCTGCGGCGGCGG
ATGTGACGGCGGTGGCAACGGCAGCTGACGCTGCGGCGAGGGCTGGAGGG
GGTCAGCTTGCCGTGCCTCGCCGAATTTGACCTCTGGGGCTGCCCCGCCG
TCGACTTGGCGGCGCTGGCCGACCTGGCGGCGGCGACCTGCTGCCCCATG
CTCACCAGGGTTCGGCTGGCGGCGGCGGCTTCATTTTCGGAACTGACTGT
CTCTGGCAGAGGTGGTGCAAGGGGAGGGAAAGCCGAAAGACCCAAGCTCA
CATCGGCTGCCGGCGGCGGAGCGGCGGCGTCTGAAAGGGTGCGGACGGCC
CTGAAGGCTTTGGCGTCGCGGACGAGGTGCGCTTTGACGCGCTTTGTGTG
TTGCATGCGTGTGTTCCTACTATGTGCATTGGTTCCTACATTGCATTTTG
CGACTTCTTAGCGGCACTTCCTTCCTCACTCAATCGATTCTTCTCCTATA
AATGTCCAGATTTCAGCTACCACCATGGTCAGCTTTACCGTCGCTGCAAC
TGCTGCAGCCATCGCCGCCGACGCCTCCTTTCCTCAGCTGCTGCCGCTAC
CGTCTTTCTCTTATCATCATTGCTCTCGCCGCCGCAATCCCAAAATAGAT
ATGCGCAGATGTCTCCCGACGGCGGCGGGCTGGAGCCAGTGCCGCACTGG
CGCCATTACCACGCCGTGCTCGCCTTTGGGCGGCGTCGGAGGCGGGAGCG
GCGTGCTGCGGCGACCATCTGGCGAGCGTGGGAAGACCACGAGCGGCGCC
GCGCCTCACGACTGCAGAATTCGGCGAGGTCAATAGTCGACTTCTTGCGG
CGGGTGCGTGCATTATCTCTCTATTCTTGCAGCCTATTTTTTTCCTGAAC
TGTAATTATTCACAGTTTCTTGGAGGCTTGCTGTTGCAGTGTCTTCGGAG
TTCCTGTGGTGTGCACTCTCGCATTTAATTGCTCCGGAAGGCTGCAAATA
GTGTAGCATCAGCCAATCGGGAGGTTTGCTTCGGTAAGTGCGTTTTCTGA
GATACTATTTCCGTTTCCCCCGGATTGGCAGACCTGCTGCCCAAGCGGAG
AGAAGAAGACGCTGCTCCGCAAACGGGCGGCGGTGCGGGTTTTGCAGGTA
AAGCATTGAAGGGGGCGGAACGGCTGGTCACACTTGTGTGCTATCGGTTC
CCGCAATAGCTTGCCGTGCTTCCGGTCAACCCCTCTTATTCTGCATGCCT
GAAGTTAGCAGGATTCGTCTATACAGTTCATTCTTGTGCATAACCATTTT
GGTGCGCCGCCGATTCTACGTAATTTCCTCTGTATTTCAGCGCTCTGCCT
CCGCCCTCGGTGCTGCATTTTCCGATCCCTGAGCCTTTCATACCAGTTTT
CTCTGGAACCCCTATCCCTCACGACGGCAGGCGTTGGCCCGTGCGCGACA
CACCCGGCGGCGGTTCGAGGCGGCGGCATCGGTGCAGGCGCTCTGGAGGG
GCCGCTCCACACGGCGGGTCATGACCCGTGTGCTGGTGTTCTGGCACGCC
GCCGTCGTGATCCAATGCTCTTACAGGTAGAATAAAATTATGTTTCGGTA
GCCATTTTACAAGTTTCTCGCGCTGGCGCGAAAAGAAAGGGTTGGCGCGG
GGCCTCGATGTACGTTGACTTGCATTGCGAATGTTCCCTTGGTGCCAGCC
ATCATCCGCCTTCGCTCCCTTGCTTTGCCACCACTGCCGCTGTCGCTGAA
ATTTAGGGGTCATGCGGTGCGACGTGATCTTCGCATCCTCGACAAAGTCC
ACACATTGCTGCGGGCCCGGCAGGTAAGGAATTTCTTAGCCAGTGATGGA
TTGTCAGGAATCGTGCTCCATCTGTTCCCAGCCGGAAGAAATTGAAAATA
TAGGACCCCATTTGCCGCCTGCCCACTTCTGCTTCGTTCTCAGGCGCTGG
GCCCGGGCTGCTTCGCCCCGGCTGTTCGGTACGGCCACGACGGCGGCGCC
GGCGAGTGGAGCTTGGCGGCAGCACGGGCGCAGGTGACGGCCGCGGTGGC
GGCGCTGCGGGCGGAGCTCGCCGAAGCGCATGCCGTCGCCACCCGACAGC
GGAAGAAACGCGACGAACGGCGGCTGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig674:3502..5880-

>mRNA_P-wetherbeei_contig674.2.1 ID=mRNA_P-wetherbeei_contig674.2.1|Name=mRNA_P-wetherbeei_contig674.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1056bp|location=Sequence derived from alignment at P-wetherbeei_contig674:3502..5880- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTGGTGACGATCCGGCACTTGGGCGGCTGCTGCGGGGTTGCTCGCG
CCTCCAAACGCTGCGGCTCTGCAACCATTCACAGCTGACGCTGCGGCGAG
GGCTGGAGGGGGTCAGCTTGCCGTGCCTCGCCGAATTTGACCTCTGGGGC
TGCCCCGCCGTCGACTTGGCGGCGCTGGCCGACCTGGCGGCGGCGACCTG
CTGCCCCATGCTCACCAGGGTTCGGCTGGCGGCGGCGGCTTCATTTTCGG
AACTGACTGTCTCTGGCAGAGGTGGTGCAAGGGGAGGGAAAGCCGAAAGA
CCCAAGCTCACATCGGCTGCCGGCGGCGGAGCGGCGGCGTCTGAAAGGGT
GCGGACGGCCCTGAAGGCTTTGGCGTCGCGGACGAGATATGCGCAGATGT
CTCCCGACGGCGGCGGGCTGGAGCCAGTGCCGCACTGGCGCCATTACCAC
GCCGTGCTCGCCTTTGGGCGGCGTCGGAGGCGGGAGCGGCGTGCTGCGGC
GACCATCTGGCGAGCGTGGGAAGACCACGAGCGGCGCCGCGCCTCACGAC
TGCAGAATTCGGCGAGGTCAATAGTCGACTTCTTGCGGCGGACCTGCTGC
CCAAGCGGAGAGAAGAAGACGCTGCTCCGCAAACGGGCGGCGGTGCGGGT
TTTGCAGGCGTTGGCCCGTGCGCGACACACCCGGCGGCGGTTCGAGGCGG
CGGCATCGGTGCAGGCGCTCTGGAGGGGCCGCTCCACACGGCGGGTCATG
ACCCGTGTGCTGGTGTTCTGGCACGCCGCCGTCGTGATCCAATGCTCTTA
CAGGGGTCATGCGGTGCGACGTGATCTTCGCATCCTCGACAAAGTCCACA
CATTGCTGCGGGCCCGGCAGGCGCTGGGCCCGGGCTGCTTCGCCCCGGCT
GTTCGGTACGGCCACGACGGCGGCGCCGGCGAGTGGAGCTTGGCGGCAGC
ACGGGCGCAGGTGACGGCCGCGGTGGCGGCGCTGCGGGCGGAGCTCGCCG
AAGCGCATGCCGTCGCCACCCGACAGCGGAAGAAACGCGACGAACGGCGG
CTGGGC
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