mRNA_P-wetherbeei_contig6739.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6739.1.1
Unique NamemRNA_P-wetherbeei_contig6739.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6739.1.1 vs. uniprot
Match: A0A182GEU4_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GEU4_AEDAL)

HSP 1 Score: 86.3 bits (212), Expect = 2.260e-18
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:   13 GAVAQPVLTGYSDADMAGNLENRRSTTGVIFQLAGGAVSFSSGLQRSVARSTMEAEYMALFETAQTAVLLSGVLEHICEELRAEPTVNREDNLSCI 300
            G  A+  L GYSDAD AG+  +R+S +G +F L G  VS++S  Q  V  STMEAEY+AL E AQ AV L G+L+ + EE + +PTV  EDN SC+
Sbjct:   89 GGTAEWKLVGYSDADWAGDANDRKSCSGFLFGLGGATVSWTSRKQTCVTMSTMEAEYVALSEAAQEAVWLRGLLKELNEE-QTKPTVIFEDNRSCL 183
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BLAST of mRNA_P-wetherbeei_contig6739.1.1 vs. uniprot
Match: UPI0018E3C115 (secreted RxLR effector protein 161-like n=1 Tax=Culex quinquefasciatus TaxID=7176 RepID=UPI0018E3C115)

HSP 1 Score: 82.0 bits (201), Expect = 7.740e-17
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:   34 LTGYSDADMAGNLENRRSTTGVIFQLAGGAVSFSSGLQRSVARSTMEAEYMALFETAQTAVLLSGVLEHICEELRAEPTVNREDNLSCI 300
            L GYSDAD AG+L+ R+STTG +F  +GGAVS++S LQ+ V  S+ME+E++AL +T+Q AV L  ++E   E    +P   +EDN SCI
Sbjct:   85 LVGYSDADWAGDLKTRKSTTGSVFLYSGGAVSWASRLQQCVTLSSMESEFVALCDTSQEAVWLLTLMEDFGEP-EQKPLTIKEDNQSCI 172
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BLAST of mRNA_P-wetherbeei_contig6739.1.1 vs. uniprot
Match: A0A1E3PVR8_LIPST (Uncharacterized protein (Fragment) n=1 Tax=Lipomyces starkeyi NRRL Y-11557 TaxID=675824 RepID=A0A1E3PVR8_LIPST)

HSP 1 Score: 77.8 bits (190), Expect = 1.470e-16
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:   34 LTGYSDADMAGNLENRRSTTGVIFQLAGGAVSFSSGLQRSVARSTMEAEYMALFETAQTAVLLSGVLEHICEELRAEPTVNREDNLSCIT 303
            L GYSDA+ AG+L+ RRSTTG +F++  G +S+ S  Q +VA+ST EAEYMAL    Q A+ L  +L  +     A PT   EDN+SCI+
Sbjct:    1 LEGYSDANWAGDLDTRRSTTGYVFKVPSGLISWRSTRQHTVAKSTAEAEYMALSGGTQEAIYLRQLLAQLSFPQTA-PTTIFEDNMSCIS 89
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BLAST of mRNA_P-wetherbeei_contig6739.1.1 vs. uniprot
Match: A0A182HA04_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HA04_AEDAL)

HSP 1 Score: 79.7 bits (195), Expect = 9.520e-16
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   34 LTGYSDADMAGNLENRRSTTGVIFQLAGGAVSFSSGLQRSVARSTMEAEYMALFETAQTAVLLSGVLEHICEELRAEPTVNREDNLSCI 300
            L GY+DAD AG+L++R+STTG +F  AGGA+S++S LQ  V  S+ME+EY+AL E +Q AV L  + E   E    +P    EDN SCI
Sbjct:  121 LVGYADADWAGDLKSRKSTTGTVFMYAGGAISWTSRLQDFVTLSSMESEYVALSEASQEAVWLLKLFEDFGEP-SFKPVTLWEDNQSCI 208
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BLAST of mRNA_P-wetherbeei_contig6739.1.1 vs. uniprot
Match: A0A371G3A3_MUCPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371G3A3_MUCPR)

HSP 1 Score: 79.7 bits (195), Expect = 1.900e-15
Identity = 39/73 (53.42%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:   25 QPVLTGYSDADMAGNLENRRSTTGVIFQLAGGAVSFSSGLQRSVARSTMEAEYMALFETAQTAVLLSGVLEHI 243
            +P+L GY+DADMA +L+ RRST+G +F  AGGA+S+ S LQ+ VA ST EAEY+AL E+ + A+ L G L+ +
Sbjct:  195 KPILEGYADADMARDLDGRRSTSGYVFTFAGGAISWQSKLQKCVALSTTEAEYIALTESGKEALWLKGFLQEL 267
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BLAST of mRNA_P-wetherbeei_contig6739.1.1 vs. uniprot
Match: A0A182GBG5_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GBG5_AEDAL)

HSP 1 Score: 78.6 bits (192), Expect = 2.100e-15
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   34 LTGYSDADMAGNLENRRSTTGVIFQLAGGAVSFSSGLQRSVARSTMEAEYMALFETAQTAVLLSGVLEHICEELRAEPTVNREDNLSCI 300
              G+SDAD AG++  RRSTTG +F  AGGA+S+ S LQ  V  S+ME+EY+AL E  Q AV L   L  + E L   PT   EDN  CI
Sbjct:   97 FAGFSDADWAGDINTRRSTTGFVFLYAGGAISWGSRLQHCVTLSSMESEYVALGEATQEAVWLRRFLTDMGETLEG-PTCIMEDNQGCI 184
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BLAST of mRNA_P-wetherbeei_contig6739.1.1 vs. uniprot
Match: UPI001F04687D (secreted RxLR effector protein 161-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04687D)

HSP 1 Score: 77.0 bits (188), Expect = 4.070e-15
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:   34 LTGYSDADMAGNLENRRSTTGVIFQLAGGAVSFSSGLQRSVARSTMEAEYMALFETAQTAVLLSGVLEHICEELRAEPTVNREDNLSCI 300
            L GYSDAD AGNL++RRST+G +F+LA   +S+SS  Q +VARST EAEY+AL +  Q  + L  +L  +  +    PT   EDN   I
Sbjct:   63 LHGYSDADYAGNLDDRRSTSGYVFKLANSTISWSSKKQSTVARSTTEAEYVALSQATQEVIWLRRLLSDLGSK-PVSPTTVHEDNQGAI 150
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BLAST of mRNA_P-wetherbeei_contig6739.1.1 vs. uniprot
Match: A0A392MUY3_9FABA (Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MUY3_9FABA)

HSP 1 Score: 79.0 bits (193), Expect = 5.360e-15
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:   22 AQPVLTGYSDADMAGNLENRRSTTGVIFQLAGGAVSFSSGLQRSVARSTMEAEYMALFETAQTAVLLSGVLEHI 243
            ++P+L GYSDADMAG+L+ R+ST+G++F  AGGAVS+ S LQ+ VA ST EAEY+A+ E  +  + L   L+ +
Sbjct:  362 SEPILEGYSDADMAGDLDGRKSTSGILFTFAGGAVSWQSKLQKCVALSTTEAEYIAMAEAGKEMLWLKRFLQQL 435
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BLAST of mRNA_P-wetherbeei_contig6739.1.1 vs. uniprot
Match: A0A4Q2UTC2_FUSOX (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Fusarium oxysporum f. sp. narcissi TaxID=451672 RepID=A0A4Q2UTC2_FUSOX)

HSP 1 Score: 78.2 bits (191), Expect = 6.180e-15
Identity = 48/99 (48.48%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:   25 QPVLTGYSDADMAGNLENRRSTTGVIFQLAGGAVSFSSGLQRSVARSTMEAEYMALFETAQTAVLLSGVLEHICEELRAEP----TVNREDNLSCITAS 309
            QP+L GY+D+D AG+LE RRST+G +F L  GA+S+SS  QR+VA S+ EAEYM     A+ AV L G+L+ + +E R  P    TV   DN   I  S
Sbjct:  168 QPLL-GYTDSDWAGDLETRRSTSGYVFNLGTGAISWSSKRQRTVALSSCEAEYMGQTAAAKEAVWLRGLLQELLKEYREVPELKTTVIFGDNQGAIAMS 265
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BLAST of mRNA_P-wetherbeei_contig6739.1.1 vs. uniprot
Match: A0A0C9S056_9HYME (POLX_1 protein n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9S056_9HYME)

HSP 1 Score: 76.6 bits (187), Expect = 9.590e-15
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   34 LTGYSDADMAGNLENRRSTTGVIFQLAGGAVSFSSGLQRSVARSTMEAEYMALFETAQTAVLLSGVLEHICEELRAEPTVNREDNLSCI 300
            +TGYSDADMA N+ +RRS TG  F + G A+S++S  Q +VA ST EAEYMAL    Q A  L  ++  +  E+  EPT+   DN   I
Sbjct:  100 MTGYSDADMANNIIDRRSVTGYAFVMQGAAISWASRRQPTVALSTAEAEYMALSSACQEATWLRLLMRDLDPEMLNEPTIIHSDNKGAI 188
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6739.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182GEU4_AEDAL2.260e-1851.04Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
UPI0018E3C1157.740e-1750.56secreted RxLR effector protein 161-like n=1 Tax=Cu... [more]
A0A1E3PVR8_LIPST1.470e-1648.89Uncharacterized protein (Fragment) n=1 Tax=Lipomyc... [more]
A0A182HA04_AEDAL9.520e-1650.56Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A371G3A3_MUCPR1.900e-1553.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182GBG5_AEDAL2.100e-1550.56Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
UPI001F04687D4.070e-1548.31secreted RxLR effector protein 161-like n=1 Tax=Xe... [more]
A0A392MUY3_9FABA5.360e-1551.35Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium m... [more]
A0A4Q2UTC2_FUSOX6.180e-1548.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C9S056_9HYME9.590e-1547.19POLX_1 protein n=1 Tax=Fopius arisanus TaxID=64838... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6739contigP-wetherbeei_contig6739:279..592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4081.Solyc04g011970.1.1
PFAMsRVT_2,Retrotran_gag_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve,zf-CCHC
Model size315
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.61e-15
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,44UC5@71274|asterids
DescriptionMitochondrial protein
Cds size312
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.4656496-CDS-P-wetherbeei_contig6739:278..5901683186933.4656496-CDS-P-wetherbeei_contig6739:278..590Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6739 279..590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6739.1.1prot_P-wetherbeei_contig6739.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6739 279..590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6739.1.1

>prot_P-wetherbeei_contig6739.1.1 ID=prot_P-wetherbeei_contig6739.1.1|Name=mRNA_P-wetherbeei_contig6739.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
VNRRGAVAQPVLTGYSDADMAGNLENRRSTTGVIFQLAGGAVSFSSGLQR
SVARSTMEAEYMALFETAQTAVLLSGVLEHICEELRAEPTVNREDNLSCI
TAST
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mRNA from alignment at P-wetherbeei_contig6739:279..592+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6739.1.1 ID=mRNA_P-wetherbeei_contig6739.1.1|Name=mRNA_P-wetherbeei_contig6739.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=314bp|location=Sequence derived from alignment at P-wetherbeei_contig6739:279..592+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAACCGCCGCGGAGCGGTAGCGCAGCCAGTGCTGACAGGCTACAGCGA
CGCCGACATGGCCGGTAACCTTGAAAACCGGCGTTCCACCACAGGTGTCA
TATTCCAGCTGGCAGGTGGGGCAGTATCATTTTCGAGTGGGCTCCAGCGT
TCGGTGGCACGTTCGACAATGGAGGCGGAGTATATGGCGCTGTTTGAGAC
GGCGCAGACAGCCGTTTTGCTGAGCGGGGTGTTGGAGCACATTTGCGAGG
AGCTGCGGGCCGAACCGACGGTGAACCGCGAGGACAACCTCTCCTGCATC
ACCGCATCGACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6739:279..592+

>mRNA_P-wetherbeei_contig6739.1.1 ID=mRNA_P-wetherbeei_contig6739.1.1|Name=mRNA_P-wetherbeei_contig6739.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig6739:279..592+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAACCGCCGCGGAGCGGTAGCGCAGCCAGTGCTGACAGGCTACAGCGA
CGCCGACATGGCCGGTAACCTTGAAAACCGGCGTTCCACCACAGGTGTCA
TATTCCAGCTGGCAGGTGGGGCAGTATCATTTTCGAGTGGGCTCCAGCGT
TCGGTGGCACGTTCGACAATGGAGGCGGAGTATATGGCGCTGTTTGAGAC
GGCGCAGACAGCCGTTTTGCTGAGCGGGGTGTTGGAGCACATTTGCGAGG
AGCTGCGGGCCGAACCGACGGTGAACCGCGAGGACAACCTCTCCTGCATC
ACCGCATCGACG
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