mRNA_P-wetherbeei_contig6731.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6731.2.1
Unique NamemRNA_P-wetherbeei_contig6731.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6731.2.1 vs. uniprot
Match: A0A8J5XIC4_DIALT (Ferredoxin--NADP(+) reductase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XIC4_DIALT)

HSP 1 Score: 64.3 bits (155), Expect = 1.760e-8
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 2 
Query:  407 QGMMPSINAMLERVAAAKGVAWDARLAELKKRGQWHVEVY 526
            +GMMP I  MLERVA +KG++W+ +L ELKK GQWHVEVY
Sbjct:  311 KGMMPGITEMLERVAQSKGISWEEKLEELKKNGQWHVEVY 350
[Close]
BLAST of mRNA_P-wetherbeei_contig6731.2.1 vs. uniprot
Match: A0A6H5KHJ2_9PHAE (Ferredoxin--NADP(+) reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHJ2_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 8.770e-8
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  407 QGMMPSINAMLERVAAAKGVAWDARLAELKKRGQWHVEVY 526
            +GMMP I  ML RVA  +G++WDA+L ELK +GQWHVEVY
Sbjct:  345 KGMMPGITDMLARVAGERGISWDAKLKELKSKGQWHVEVY 384
[Close]
BLAST of mRNA_P-wetherbeei_contig6731.2.1 vs. uniprot
Match: A0A8J6C0Y3_DIALT (Ferredoxin--NADP(+) reductase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C0Y3_DIALT)

HSP 1 Score: 60.8 bits (146), Expect = 2.910e-7
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  407 QGMMPSINAMLERVAAAKGVAWDARLAELKKRGQWHVEVY 526
            +GMMP I  MLERVA +KG+AW+  L  LKK+GQWHVEVY
Sbjct:  341 KGMMPGITEMLERVAKSKGLAWEEFLEGLKKKGQWHVEVY 380
[Close]
BLAST of mRNA_P-wetherbeei_contig6731.2.1 vs. uniprot
Match: A0A7S3CC21_9CHLO (Ferredoxin--NADP reductase, chloroplastic n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CC21_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 1.730e-6
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 2 
Query:  407 QGMMPSINAMLERVAAAKGVAWDARLAELKKRGQWHVEVY 526
            +GMMP IN MLE+VA +KG  W     +LKK+GQWHVEVY
Sbjct:  331 KGMMPGINGMLEKVATSKGKDWSEMQKDLKKKGQWHVEVY 370
[Close]
BLAST of mRNA_P-wetherbeei_contig6731.2.1 vs. uniprot
Match: A0A6T9DV52_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A6T9DV52_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 1.990e-6
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 QDKVEEHADEIFERLDNGAHMYFCGLK 81
            QDKV E+ADEIFER+DNGAHMYFCGLK
Sbjct:   73 QDKVAEYADEIFERMDNGAHMYFCGLK 99
[Close]
BLAST of mRNA_P-wetherbeei_contig6731.2.1 vs. uniprot
Match: A0A7S2Y434_9STRA (Ferredoxin--NADP(+) reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y434_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.780e-6
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  407 QGMMPSINAMLERVAAAKGVAWDARLAELKKRGQWHVEVY 526
            +GMMP I  MLE V  A+G+ W  RL +LKK+ QWHVEVY
Sbjct:  284 KGMMPGIEGMLETVCQARGIVWKDRLKQLKKKNQWHVEVY 323
[Close]
BLAST of mRNA_P-wetherbeei_contig6731.2.1 vs. uniprot
Match: A0A5B8MPK6_9CHLO (Ferredoxin--NADP reductase, chloroplastic n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MPK6_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 4.240e-6
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  407 QGMMPSINAMLERVAAAKGVAWDARLAELKKRGQWHVEVY 526
            +GMMP IN MLE+VA  KG  W     +LKK+GQWHVEVY
Sbjct:  329 KGMMPGINEMLEKVAKGKGKDWSEMQKDLKKKGQWHVEVY 368
[Close]
BLAST of mRNA_P-wetherbeei_contig6731.2.1 vs. uniprot
Match: R1FCU8_EMIHU (Ferredoxin--NADP(+) reductase (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FCU8_EMIHU)

HSP 1 Score: 56.6 bits (135), Expect = 6.840e-6
Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 QDKVEEHADEIFERLDNGAHMYFCGLK 81
            QDKV +HADE+FER+DNGAHMYFCGLK
Sbjct:  255 QDKVAQHADEVFERMDNGAHMYFCGLK 281
[Close]
BLAST of mRNA_P-wetherbeei_contig6731.2.1 vs. uniprot
Match: A0A7S3YL83_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YL83_HETAK)

HSP 1 Score: 55.5 bits (132), Expect = 7.520e-6
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:    1 QDKVEEHADEIFERLDNGAHMYFCGLK 81
            QDKVEE+ADEIF +LDNGAHMYFCGLK
Sbjct:  137 QDKVEEYADEIFAKLDNGAHMYFCGLK 163
[Close]
BLAST of mRNA_P-wetherbeei_contig6731.2.1 vs. uniprot
Match: A0A7I8KK84_SPIIN (Ferredoxin--NADP reductase, chloroplastic n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KK84_SPIIN)

HSP 1 Score: 56.6 bits (135), Expect = 7.880e-6
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 2 
Query:  407 QGMMPSINAMLERVAAAKGVAWDARLAELKKRGQWHVEVY 526
            +GMMP I   L+RVA  +G AWDA+L +LKK  QWHVEVY
Sbjct:  340 KGMMPGIQDTLKRVAEERGEAWDAKLLQLKKNKQWHVEVY 379
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6731.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J5XIC4_DIALT1.760e-867.50Ferredoxin--NADP(+) reductase n=1 Tax=Diacronema l... [more]
A0A6H5KHJ2_9PHAE8.770e-865.00Ferredoxin--NADP(+) reductase n=2 Tax=Ectocarpus T... [more]
A0A8J6C0Y3_DIALT2.910e-767.50Ferredoxin--NADP(+) reductase n=2 Tax=Diacronema l... [more]
A0A7S3CC21_9CHLO1.730e-662.50Ferredoxin--NADP reductase, chloroplastic n=1 Tax=... [more]
A0A6T9DV52_9EUKA1.990e-688.89Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2Y434_9STRA3.780e-660.00Ferredoxin--NADP(+) reductase n=1 Tax=Fibrocapsa j... [more]
A0A5B8MPK6_9CHLO4.240e-662.50Ferredoxin--NADP reductase, chloroplastic n=1 Tax=... [more]
R1FCU8_EMIHU6.840e-685.19Ferredoxin--NADP(+) reductase (Fragment) n=1 Tax=E... [more]
A0A7S3YL83_HETAK7.520e-688.89Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7I8KK84_SPIIN7.880e-662.50Ferredoxin--NADP reductase, chloroplastic n=2 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6731contigP-wetherbeei_contig6731:2621..3306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSR5
Model size686
Max annot lvl2880.D7FSR5|-
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.31e-09
EggNOG OGsCOG0369@1|root,KOG1158@2759|Eukaryota
DescriptionNADPH-hemoprotein reductase activity
Cds size480
COG categoryP
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.0666182-UTR-P-wetherbeei_contig6731:2620..27771683186933.0666182-UTR-P-wetherbeei_contig6731:2620..2777Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6731 2621..2777 -
1683186933.0884032-UTR-P-wetherbeei_contig6731:3257..33061683186933.0884032-UTR-P-wetherbeei_contig6731:3257..3306Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6731 3258..3306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186933.0782237-CDS-P-wetherbeei_contig6731:2777..32571683186933.0782237-CDS-P-wetherbeei_contig6731:2777..3257Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6731 2778..3257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6731.2.1prot_P-wetherbeei_contig6731.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6731 2778..3257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6731.2.1

>prot_P-wetherbeei_contig6731.2.1 ID=prot_P-wetherbeei_contig6731.2.1|Name=mRNA_P-wetherbeei_contig6731.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MAPTCTSAVSRCSFSVSRAIGLDCWTVCSLWSSSPLLSSAQSVGSIFQRP
PILSACAIHWRVGAFLARRWSAATLRFAMNLLSPCLFLFVLQLFCPFCSL
FLRLSLSRSRVLTGRSLRWQGMMPSINAMLERVAAAKGVAWDARLAELKK
RGQWHVEVY*
back to top

mRNA from alignment at P-wetherbeei_contig6731:2621..3306-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6731.2.1 ID=mRNA_P-wetherbeei_contig6731.2.1|Name=mRNA_P-wetherbeei_contig6731.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=686bp|location=Sequence derived from alignment at P-wetherbeei_contig6731:2621..3306- (Phaeothamnion wetherbeei SAG_119_79)
CAGGACAAGGTGGAGGAGCACGCCGACGAGATCTTTGAGCGCCTCGACAA
TGGCGCCCACATGTACTTCTGCGGTCTCAAGGTGCAGTTTTTCAGTTTCG
CGGGCTATTGGTTTGGATTGTTGGACGGTTTGCTCTCTCTGGTCATCCAG
CCCACTTTTGTCGAGCGCGCAATCAGTGGGCTCGATCTTTCAACGTCCGC
CGATTTTGTCCGCTTGTGCTATTCACTGGCGAGTGGGTGCCTTTCTAGCG
CGCCGCTGGTCCGCCGCAACTCTTCGTTTCGCCATGAACCTCCTATCTCC
TTGTCTCTTTCTTTTCGTTCTCCAGCTCTTTTGTCCTTTCTGCTCGTTGT
TTCTACGTCTCTCTCTTTCGCGGTCGCGGGTTCTTACCGGGCGCTCCCTT
CGGTGGCAGGGCATGATGCCGAGCATCAATGCCATGCTGGAGCGTGTCGC
CGCTGCCAAGGGCGTCGCCTGGGACGCCCGCCTCGCCGAGCTCAAGAAGC
GCGGCCAGTGGCACGTCGAAGTGTACTAGACTATACTGTTGCAGCAGCGA
AATGCCAGAACAATTTTGATGCCTGCTCCATGATAGGTACAACATTGCAA
AAAACATCTCTTTTGTCAAAAGTTACAGTTCTATTCTCAAAGTTACCTGT
TGGGTTGTCGCCCTCGATACGTTGTGTGCAAGATGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6731:2621..3306-

>mRNA_P-wetherbeei_contig6731.2.1 ID=mRNA_P-wetherbeei_contig6731.2.1|Name=mRNA_P-wetherbeei_contig6731.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig6731:2621..3306- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCCACATGTACTTCTGCGGTCTCAAGGTGCAGTTTTTCAGTTTC
GCGGGCTATTGGTTTGGATTGTTGGACGGTTTGCTCTCTCTGGTCATCCA
GCCCACTTTTGTCGAGCGCGCAATCAGTGGGCTCGATCTTTCAACGTCCG
CCGATTTTGTCCGCTTGTGCTATTCACTGGCGAGTGGGTGCCTTTCTAGC
GCGCCGCTGGTCCGCCGCAACTCTTCGTTTCGCCATGAACCTCCTATCTC
CTTGTCTCTTTCTTTTCGTTCTCCAGCTCTTTTGTCCTTTCTGCTCGTTG
TTTCTACGTCTCTCTCTTTCGCGGTCGCGGGTTCTTACCGGGCGCTCCCT
TCGGTGGCAGGGCATGATGCCGAGCATCAATGCCATGCTGGAGCGTGTCG
CCGCTGCCAAGGGCGTCGCCTGGGACGCCCGCCTCGCCGAGCTCAAGAAG
CGCGGCCAGTGGCACGTCGAAGTGTACTAG
back to top