mRNA_P-wetherbeei_contig6723.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6723.3.1
Unique NamemRNA_P-wetherbeei_contig6723.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6723.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6723contigP-wetherbeei_contig6723:1735..2840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size922
Hectar predicted targeting categoryother localisation
Exons2
Cds size753
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.5469599-CDS-P-wetherbeei_contig6723:1734..23141683186932.5469599-CDS-P-wetherbeei_contig6723:1734..2314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6723 1735..2314 -
1683186932.5556536-CDS-P-wetherbeei_contig6723:2500..26731683186932.5556536-CDS-P-wetherbeei_contig6723:2500..2673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6723 2501..2673 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.5639763-UTR-P-wetherbeei_contig6723:2673..28401683186932.5639763-UTR-P-wetherbeei_contig6723:2673..2840Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6723 2674..2840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6723.3.1prot_P-wetherbeei_contig6723.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6723 1735..2673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6723.3.1

>prot_P-wetherbeei_contig6723.3.1 ID=prot_P-wetherbeei_contig6723.3.1|Name=mRNA_P-wetherbeei_contig6723.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=251bp
MAGVPIVEQRRAFFYHFPHLPQGHRDTDLLHGRLSKDVAYTLPLELCAGE
KANSKALRTYIKYKCGHHERLRRDMGDRSMTLGRRAGSSGGSIAASSPSS
CSLSSVDGSSGPVDVIFPDVATAQQVLQALRMQADVTALADKPADAPATF
APAFGGGEPHPPSSPAHHPGSSTDVSKSGSVVSVNGYSSGYGSSIRALPL
ELQELRKGFFISERYINAIGVASMRPRVLALRLGMPAASAGRMPPSPTLA
I
back to top

mRNA from alignment at P-wetherbeei_contig6723:1735..2840-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6723.3.1 ID=mRNA_P-wetherbeei_contig6723.3.1|Name=mRNA_P-wetherbeei_contig6723.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1106bp|location=Sequence derived from alignment at P-wetherbeei_contig6723:1735..2840- (Phaeothamnion wetherbeei SAG_119_79)
GGCCAGACCATGCGGACGAAGGGTTTGTTTGAAAACCGCGCTAGCGGCTG
GAAACAAAGTGATCCGAGGTTCAAGCAACACGCTCTCTTTGTCTCTCACC
TTTTAGCATACACTACTTCTTGCGGTTCCTTCATTCGCTGTTTTTTAATT
GCGATTCCCTTCCGAACATGGCTGGAGTTCCCATAGTTGAACAACGTCGG
GCATTTTTTTATCATTTTCCCCATTTGCCGCAGGGACACCGCGACACGGA
TTTGCTGCATGGGCGGCTCTCGAAGGACGTGGCCTACACACTGCCGCTGG
AGCTGTGCGCCGGAGAAAAGGCGAACTCCAAGGCACTAAGGCAAGAGAAG
TCAAAAGGAATGAAATCCACTTCGCGAGAACGCTGCGAGCGGTGCTTTTC
TCCATATTCTGTTCGTTTGCTTCTCTGTCTGCACGGCTCCCCCCCCCCAT
ACAGCGGCATCGCCTAAGTTCTTCACATTGTGCCCGCAACATATTTTATT
CGTACCCGGGATAACTTCCCTTCCAGGACCTACATAAAGTACAAATGTGG
CCACCACGAACGGTTGCGTCGCGACATGGGCGACCGGTCGATGACGCTCG
GGCGGCGCGCGGGCAGCAGCGGTGGCAGCATCGCCGCGTCGTCACCGTCG
TCGTGTTCTTTGTCCTCTGTCGATGGCAGCAGCGGCCCAGTCGACGTCAT
TTTCCCAGACGTGGCGACGGCCCAACAGGTGCTCCAGGCGCTCCGAATGC
AGGCCGACGTGACCGCGCTCGCAGACAAGCCGGCCGATGCCCCGGCAACA
TTTGCCCCCGCCTTTGGCGGCGGCGAGCCCCACCCGCCATCGTCCCCCGC
CCACCATCCCGGCTCCTCGACGGACGTCAGCAAAAGCGGCTCCGTTGTCA
GCGTCAACGGTTACAGCAGCGGTTACGGCAGCAGCATCCGTGCGCTGCCC
CTGGAGCTGCAGGAGCTGCGCAAGGGCTTCTTCATCAGCGAGCGCTACAT
CAACGCCATCGGTGTCGCGTCTATGCGGCCGCGCGTGTTGGCGCTCCGCC
TGGGCATGCCCGCCGCCTCCGCCGGCCGCATGCCGCCGTCGCCGACGCTG
GCAATC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6723:1735..2840-

>mRNA_P-wetherbeei_contig6723.3.1 ID=mRNA_P-wetherbeei_contig6723.3.1|Name=mRNA_P-wetherbeei_contig6723.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig6723:1735..2840- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGGAGTTCCCATAGTTGAACAACGTCGGGCATTTTTTTATCATTT
TCCCCATTTGCCGCAGGGACACCGCGACACGGATTTGCTGCATGGGCGGC
TCTCGAAGGACGTGGCCTACACACTGCCGCTGGAGCTGTGCGCCGGAGAA
AAGGCGAACTCCAAGGCACTAAGGACCTACATAAAGTACAAATGTGGCCA
CCACGAACGGTTGCGTCGCGACATGGGCGACCGGTCGATGACGCTCGGGC
GGCGCGCGGGCAGCAGCGGTGGCAGCATCGCCGCGTCGTCACCGTCGTCG
TGTTCTTTGTCCTCTGTCGATGGCAGCAGCGGCCCAGTCGACGTCATTTT
CCCAGACGTGGCGACGGCCCAACAGGTGCTCCAGGCGCTCCGAATGCAGG
CCGACGTGACCGCGCTCGCAGACAAGCCGGCCGATGCCCCGGCAACATTT
GCCCCCGCCTTTGGCGGCGGCGAGCCCCACCCGCCATCGTCCCCCGCCCA
CCATCCCGGCTCCTCGACGGACGTCAGCAAAAGCGGCTCCGTTGTCAGCG
TCAACGGTTACAGCAGCGGTTACGGCAGCAGCATCCGTGCGCTGCCCCTG
GAGCTGCAGGAGCTGCGCAAGGGCTTCTTCATCAGCGAGCGCTACATCAA
CGCCATCGGTGTCGCGTCTATGCGGCCGCGCGTGTTGGCGCTCCGCCTGG
GCATGCCCGCCGCCTCCGCCGGCCGCATGCCGCCGTCGCCGACGCTGGCA
ATC
back to top