mRNA_P-wetherbeei_contig672.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig672.1.1
Unique NamemRNA_P-wetherbeei_contig672.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig672.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig672contigP-wetherbeei_contig672:1698..2721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size865
Hectar predicted targeting categoryother localisation
Exons2
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.239453-UTR-P-wetherbeei_contig672:1697..20351683186932.239453-UTR-P-wetherbeei_contig672:1697..2035Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig672 1698..2035 -
1683186932.2753482-UTR-P-wetherbeei_contig672:2650..27211683186932.2753482-UTR-P-wetherbeei_contig672:2650..2721Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig672 2651..2721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.2507627-CDS-P-wetherbeei_contig672:2035..24741683186932.2507627-CDS-P-wetherbeei_contig672:2035..2474Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig672 2036..2474 -
1683186932.2668703-CDS-P-wetherbeei_contig672:2633..26501683186932.2668703-CDS-P-wetherbeei_contig672:2633..2650Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig672 2634..2650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig672.1.1prot_P-wetherbeei_contig672.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig672 2036..2650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig672.1.1

>prot_P-wetherbeei_contig672.1.1 ID=prot_P-wetherbeei_contig672.1.1|Name=mRNA_P-wetherbeei_contig672.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MEEMWRLSARRRPVTCWRPCCSASTSERPGRPMSSAVPAAPSRPSAGLSA
SEAGPAAAPRLRPSSAEQRASRACGRSHSATRGSPACFWTSWWSQSGCRR
KTRRTLARPRGHEVDCGRAKDRAIGWMSGRWVTQAGRREARVGGASDADG
R*
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mRNA from alignment at P-wetherbeei_contig672:1698..2721-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig672.1.1 ID=mRNA_P-wetherbeei_contig672.1.1|Name=mRNA_P-wetherbeei_contig672.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1024bp|location=Sequence derived from alignment at P-wetherbeei_contig672:1698..2721- (Phaeothamnion wetherbeei SAG_119_79)
CCGCGTGCAGGCTTGGGGGACCATCAATCCCGACGAGATCGCCGTGCCCG
AGGGCTCGCAAATTGACATTGATGGAGGAGATGTGGAGGTAAGGAGACAT
GAGTCTCTCCTTCCAGTCATTCTCGAAGCAGGGCAGCCGCGCTGGATATA
GAGCACGAGACGACATGTCTGTACCCAGAAGGCTTCATTTCCAAAGGTCT
TGTGATGAGACGTTTACGTGTTCCTTTCTCTCTTCTTCGCCTGCCAGATT
GTCGGCCCGGCGACGGCCCGTGACGTGCTGGAGGCCGTGCTGCAGTGCCA
GCACGAGCGAACGCCCCGGCCGGCCAATGTCGTCGGCTGTGCCCGCTGCC
CCGTCGAGGCCTTCTGCGGGTTTGAGCGCCTCGGAAGCGGGCCCGGCGGC
AGCGCCACGCCTGCGGCCTTCGTCGGCGGAACAACGTGCTTCAAGAGCCT
GTGGTCGAAGCCATTCTGCCACAAGGGGCTCACCGGCGTGTTTCTGGACG
AGCTGGTGGAGCCAGAGTGGCTGTCGCCGGAAAACGCGGCGAACTTTGGC
ACGTCCAAGGGGCCATGAGGTCGACTGTGGACGTGCTAAAGACCGAGCGA
TTGGATGGATGAGTGGGCGGTGGGTGACTCAGGCTGGAAGGCGAGAGGCG
CGCGTGGGCGGCGCCAGCGACGCGGACGGCCGCTGAGGAGTCTTCGGCCG
ACCGAAACTGTAACGGGCACCGAGCAACATGGGATCGCTCAGCGGCAGAG
AGCACGACGGGCGGTTTGGGCGTGCTCTCGCTCTCTTGGATCTTCTGCAT
TCCCATGAAGGAGCTTATGCCTTGGGGGGGGACATAGCGAGTTGACAAGC
TCACTTTAGAATGCTCCAGCGGGATTTTCATGAAAAGAGCACAGCCAAGA
GATGGCACGATAGACGGAGCAGGGGCGAAAGAGAAGGATAAGAGCAGAGC
AAGGGAGGGGCAGAAGGAACGGAGAAGCAGAAGACGGCGACGTGCGTAAT
CGAAGAAACAGGGACTACAGCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig672:1698..2721-

>mRNA_P-wetherbeei_contig672.1.1 ID=mRNA_P-wetherbeei_contig672.1.1|Name=mRNA_P-wetherbeei_contig672.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig672:1698..2721- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGAGATGTGGAGATTGTCGGCCCGGCGACGGCCCGTGACGTGCTG
GAGGCCGTGCTGCAGTGCCAGCACGAGCGAACGCCCCGGCCGGCCAATGT
CGTCGGCTGTGCCCGCTGCCCCGTCGAGGCCTTCTGCGGGTTTGAGCGCC
TCGGAAGCGGGCCCGGCGGCAGCGCCACGCCTGCGGCCTTCGTCGGCGGA
ACAACGTGCTTCAAGAGCCTGTGGTCGAAGCCATTCTGCCACAAGGGGCT
CACCGGCGTGTTTCTGGACGAGCTGGTGGAGCCAGAGTGGCTGTCGCCGG
AAAACGCGGCGAACTTTGGCACGTCCAAGGGGCCATGAGGTCGACTGTGG
ACGTGCTAAAGACCGAGCGATTGGATGGATGAGTGGGCGGTGGGTGACTC
AGGCTGGAAGGCGAGAGGCGCGCGTGGGCGGCGCCAGCGACGCGGACGGC
CGCTGA
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