mRNA_P-wetherbeei_contig6716.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6716.1.1
Unique NamemRNA_P-wetherbeei_contig6716.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6716.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6716contigP-wetherbeei_contig6716:2..1044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1043
Hectar predicted targeting categoryother localisation
Exons1
Cds size735
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.037749-UTR-P-wetherbeei_contig6716:1..801683186932.037749-UTR-P-wetherbeei_contig6716:1..80Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6716 2..80 +
1683186932.0598283-UTR-P-wetherbeei_contig6716:815..10441683186932.0598283-UTR-P-wetherbeei_contig6716:815..1044Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6716 816..1044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.0489259-CDS-P-wetherbeei_contig6716:80..8151683186932.0489259-CDS-P-wetherbeei_contig6716:80..815Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6716 81..815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6716.1.1prot_P-wetherbeei_contig6716.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6716 81..815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6716.1.1

>prot_P-wetherbeei_contig6716.1.1 ID=prot_P-wetherbeei_contig6716.1.1|Name=mRNA_P-wetherbeei_contig6716.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=245bp
MINMSEAEVKDIMSASGKDGTINGISPAGTGAAAAAAATAAATKTAAAGA
LAQAAFAARVAAALDTLDGAALSGLFRTLQDLQRRGMEEEVRALGGKSPP
SRRQHGGSESSGDERNHNSAATVAAATPSGMAELVESMPRRPHWQHPATA
PAGLASGGSGFGGSGFCGSGGGGDHLSTDSRVSLALALLEDGDKSGPLAE
LLGLLRASPSRYERQDDPAAAAAAFGFGSVGIAAIAGGLSVVGR*
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mRNA from alignment at P-wetherbeei_contig6716:2..1044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6716.1.1 ID=mRNA_P-wetherbeei_contig6716.1.1|Name=mRNA_P-wetherbeei_contig6716.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1043bp|location=Sequence derived from alignment at P-wetherbeei_contig6716:2..1044+ (Phaeothamnion wetherbeei SAG_119_79)
CGACGATGTATCGGTGCTGGCGCCATCGGACAGCTGTGGCAGCAGCAACA
ACGACGAAAATGCCGGCGTCATTTCAGCAATGATCAACATGAGCGAAGCC
GAAGTCAAAGACATCATGTCCGCCAGCGGCAAGGACGGGACCATTAATGG
AATTTCGCCGGCGGGCACTGGCGCTGCCGCTGCTGCTGCTGCCACCGCCG
CCGCCACTAAGACAGCCGCCGCCGGAGCTCTCGCACAGGCGGCGTTTGCG
GCCCGCGTCGCAGCGGCGCTGGACACGCTGGACGGCGCCGCACTGTCAGG
TCTCTTCCGGACACTCCAAGACCTCCAGCGGCGCGGCATGGAGGAGGAAG
TGCGCGCGCTCGGCGGGAAATCGCCGCCGTCGCGGCGACAGCACGGTGGC
TCAGAAAGCAGCGGCGACGAAAGAAACCACAACAGCGCTGCGACAGTGGC
GGCGGCGACTCCCTCTGGAATGGCCGAATTGGTGGAATCGATGCCACGAC
GGCCACACTGGCAGCATCCGGCGACGGCACCGGCAGGTTTGGCGAGTGGC
GGCAGCGGCTTCGGTGGCAGTGGTTTCTGTGGCAGCGGTGGGGGCGGTGA
CCATTTGTCGACAGACAGCCGGGTGTCGCTGGCGCTGGCGCTTTTGGAAG
ACGGCGACAAGAGCGGCCCGTTGGCTGAGCTCTTGGGGCTGCTGCGGGCG
TCACCGTCCCGCTATGAACGGCAGGACGACCCGGCGGCGGCCGCAGCGGC
TTTTGGCTTCGGTTCTGTGGGCATCGCTGCGATCGCTGGCGGCCTGAGTG
TAGTCGGTCGTTAACACACCCCTGGGACGTTTGATAGCAGACGGGCCACA
GAATTGTATAAAAACAGGTGGCGGCGGCAAGGTGTCAGCAGCGATGCTGA
CGAAAGGAAAATGGCAGTCTAGCGACGCTGCCCCCCAAAAGTGGTCGGGA
GGCAAATCACATTAAAGAGGGCGGAGGGGAACAGCAAGCGCGCGGGCTCC
TCTCGCCGTTGCGTATTTGTTAAAGAAGAACGCCAGTGTCTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6716:2..1044+

>mRNA_P-wetherbeei_contig6716.1.1 ID=mRNA_P-wetherbeei_contig6716.1.1|Name=mRNA_P-wetherbeei_contig6716.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=735bp|location=Sequence derived from alignment at P-wetherbeei_contig6716:2..1044+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCAACATGAGCGAAGCCGAAGTCAAAGACATCATGTCCGCCAGCGG
CAAGGACGGGACCATTAATGGAATTTCGCCGGCGGGCACTGGCGCTGCCG
CTGCTGCTGCTGCCACCGCCGCCGCCACTAAGACAGCCGCCGCCGGAGCT
CTCGCACAGGCGGCGTTTGCGGCCCGCGTCGCAGCGGCGCTGGACACGCT
GGACGGCGCCGCACTGTCAGGTCTCTTCCGGACACTCCAAGACCTCCAGC
GGCGCGGCATGGAGGAGGAAGTGCGCGCGCTCGGCGGGAAATCGCCGCCG
TCGCGGCGACAGCACGGTGGCTCAGAAAGCAGCGGCGACGAAAGAAACCA
CAACAGCGCTGCGACAGTGGCGGCGGCGACTCCCTCTGGAATGGCCGAAT
TGGTGGAATCGATGCCACGACGGCCACACTGGCAGCATCCGGCGACGGCA
CCGGCAGGTTTGGCGAGTGGCGGCAGCGGCTTCGGTGGCAGTGGTTTCTG
TGGCAGCGGTGGGGGCGGTGACCATTTGTCGACAGACAGCCGGGTGTCGC
TGGCGCTGGCGCTTTTGGAAGACGGCGACAAGAGCGGCCCGTTGGCTGAG
CTCTTGGGGCTGCTGCGGGCGTCACCGTCCCGCTATGAACGGCAGGACGA
CCCGGCGGCGGCCGCAGCGGCTTTTGGCTTCGGTTCTGTGGGCATCGCTG
CGATCGCTGGCGGCCTGAGTGTAGTCGGTCGTTAA
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