mRNA_P-wetherbeei_contig6713.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6713.2.1
Unique NamemRNA_P-wetherbeei_contig6713.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6713.2.1 vs. uniprot
Match: A0A2G2R3Y8_9PROT (Flagellin_N domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2G2R3Y8_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 7.780e-6
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    1 VKGTVTPSDVWSVALNGITYNYTVGAHDNING-VATGLRAAINASGIFTAAGTGADIQVTIKAEAWFTGFTQNL 219
            + GT+   DV+S+ +NG TYN+TV  +    G VATGLRAAINA        TGA  QV + A+   T FT  L
Sbjct:  533 ISGTIDVGDVFSMTVNGTTYNHTVLTNAATAGDVATGLRAAINADAGAVVTATGATGQVILTADVSGTAFTTAL 606
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6713.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2G2R3Y8_9PROT7.780e-645.95Flagellin_N domain-containing protein n=1 Tax=Rhod... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6713contigP-wetherbeei_contig6713:2331..2549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size219
Hectar predicted targeting categoryother localisation
Exons1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186931.9579017-CDS-P-wetherbeei_contig6713:2330..25491683186931.9579017-CDS-P-wetherbeei_contig6713:2330..2549Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6713 2331..2549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6713.2.1prot_P-wetherbeei_contig6713.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6713 2331..2549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6713.2.1

>prot_P-wetherbeei_contig6713.2.1 ID=prot_P-wetherbeei_contig6713.2.1|Name=mRNA_P-wetherbeei_contig6713.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
VKGTVTPSDVWSVALNGITYNYTVGAHDNINGVATGLRAAINASGIFTAA
GTGADIQVTIKAEAWFTGFTQNL
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mRNA from alignment at P-wetherbeei_contig6713:2331..2549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6713.2.1 ID=mRNA_P-wetherbeei_contig6713.2.1|Name=mRNA_P-wetherbeei_contig6713.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig6713:2331..2549- (Phaeothamnion wetherbeei SAG_119_79)
GTGAAGGGCACGGTGACGCCGAGCGACGTGTGGTCGGTGGCGCTGAACGG
CATCACTTACAACTATACGGTCGGGGCGCACGACAACATCAACGGCGTAG
CCACCGGCCTGCGCGCGGCGATCAACGCAAGCGGGATATTTACCGCGGCG
GGAACGGGCGCGGACATCCAGGTCACGATCAAGGCCGAGGCCTGGTTCAC
CGGCTTCACGCAGAACCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6713:2331..2549-

>mRNA_P-wetherbeei_contig6713.2.1 ID=mRNA_P-wetherbeei_contig6713.2.1|Name=mRNA_P-wetherbeei_contig6713.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig6713:2331..2549- (Phaeothamnion wetherbeei SAG_119_79)
GTGAAGGGCACGGTGACGCCGAGCGACGTGTGGTCGGTGGCGCTGAACGG
CATCACTTACAACTATACGGTCGGGGCGCACGACAACATCAACGGCGTAG
CCACCGGCCTGCGCGCGGCGATCAACGCAAGCGGGATATTTACCGCGGCG
GGAACGGGCGCGGACATCCAGGTCACGATCAAGGCCGAGGCCTGGTTCAC
CGGCTTCACGCAGAACCTG
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