mRNA_P-wetherbeei_contig6712.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6712.1.1
Unique NamemRNA_P-wetherbeei_contig6712.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6712.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6712contigP-wetherbeei_contig6712:2587..3314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size414
Hectar predicted targeting categoryother localisation
Exons2
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186931.867222-CDS-P-wetherbeei_contig6712:2586..26681683186931.867222-CDS-P-wetherbeei_contig6712:2586..2668Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6712 2587..2668 -
1683186931.878608-CDS-P-wetherbeei_contig6712:2982..33141683186931.878608-CDS-P-wetherbeei_contig6712:2982..3314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6712 2983..3314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6712.1.1prot_P-wetherbeei_contig6712.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6712 2587..3314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6712.1.1

>prot_P-wetherbeei_contig6712.1.1 ID=prot_P-wetherbeei_contig6712.1.1|Name=mRNA_P-wetherbeei_contig6712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
MPTATPASYLRVRPAASGTVCVASSQTVAKESLWRGTLSADDGIARSDAA
ASGSGGWTALQPPHFGSDSTIPEEWLLPLAVLCRFTAYCLGLLGSASFEA
CEPRASELLNSLAENGSELRLVNRCVTPAELAAVAARN
back to top

mRNA from alignment at P-wetherbeei_contig6712:2587..3314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6712.1.1 ID=mRNA_P-wetherbeei_contig6712.1.1|Name=mRNA_P-wetherbeei_contig6712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=728bp|location=Sequence derived from alignment at P-wetherbeei_contig6712:2587..3314- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGACGGCGACCCCGGCCTCGTACTTGCGTGTGCGACCCGCAGCGTC
CGGGACCGTATGCGTCGCGTCCAGCCAGACGGTAGCAAAAGAGTCTTTGT
GGAGGGGAACATTATCGGCGGACGACGGCATTGCTCGGAGCGATGCAGCA
GCGTCGGGGTCGGGAGGGTGGACGGCGTTGCAGCCACCGCATTTCGGCAG
CGACTCGACAATCCCAGAGGAGTGGCTGCTGCCGCTGGCGGTTCTCTGTC
GGTTCACGGCGTACTGCCTGGGATTGCTCGGGTCGGCGAGCTTTGAAGCC
TGCGAACCGCGTGCCTCGGAGCTACTAAATAGGTGAAAATTTTGCTTCAT
CATGGGGACTCTTGGGGCTTTCGAAGCATGACACAAAGTCAGGTTTGTAA
AAGCCAGCTTCGGCCGATTTCCCAACAGTGCACCAAAGCACTCGGCACAG
CCAGCACTATCGCTTTCCTCACTCTCACCTTACACTGCGGTCATCTTTGT
ACTGTCGGCATGGCGCGCTACCCTTTTTACTGCTCCGTATGGTTACTGCG
GTGGCGCGTGGTGGCCGCGGCGGCGGCACGGTCAATTCCAATGGTTACGC
ACGGGCTTTCATTGCCGGCGATGGCAATGACGGGCCGGCCGGGTAGCCTG
GCGGAAAACGGGAGCGAACTGCGGCTGGTAAACCGGTGCGTCACGCCGGC
CGAGCTAGCGGCAGTGGCGGCGCGGAAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6712:2587..3314-

>mRNA_P-wetherbeei_contig6712.1.1 ID=mRNA_P-wetherbeei_contig6712.1.1|Name=mRNA_P-wetherbeei_contig6712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig6712:2587..3314- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGACGGCGACCCCGGCCTCGTACTTGCGTGTGCGACCCGCAGCGTC
CGGGACCGTATGCGTCGCGTCCAGCCAGACGGTAGCAAAAGAGTCTTTGT
GGAGGGGAACATTATCGGCGGACGACGGCATTGCTCGGAGCGATGCAGCA
GCGTCGGGGTCGGGAGGGTGGACGGCGTTGCAGCCACCGCATTTCGGCAG
CGACTCGACAATCCCAGAGGAGTGGCTGCTGCCGCTGGCGGTTCTCTGTC
GGTTCACGGCGTACTGCCTGGGATTGCTCGGGTCGGCGAGCTTTGAAGCC
TGCGAACCGCGTGCCTCGGAGCTACTAAATAGCCTGGCGGAAAACGGGAG
CGAACTGCGGCTGGTAAACCGGTGCGTCACGCCGGCCGAGCTAGCGGCAG
TGGCGGCGCGGAAC
back to top