mRNA_P-wetherbeei_contig6705.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6705.1.1
Unique NamemRNA_P-wetherbeei_contig6705.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6705.1.1 vs. uniprot
Match: A0A813FY25_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FY25_POLGL)

HSP 1 Score: 68.2 bits (165), Expect = 4.780e-12
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   28 EAYREEVFGSKFCFVFACDDPQTSRFYDAVAAGCIPIIVNDHF 156
            E Y EE+  SKFC +   DDPQ SRFYDA+AAGCIP++VND F
Sbjct:  282 ETYAEELQSSKFCLILQSDDPQISRFYDALAAGCIPVVVNDEF 324
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BLAST of mRNA_P-wetherbeei_contig6705.1.1 vs. uniprot
Match: A0A7S0GXC2_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GXC2_MICPS)

HSP 1 Score: 48.5 bits (114), Expect = 4.220e-5
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   34 YREEVFGSKFCFVFACDDPQTSRFYDAVAAGCIPIIVND 150
            Y E +  S FC+V   D+P + R +DAVAAGCIP++V+D
Sbjct:  164 YAEGMLSSTFCWVPRGDNPTSRRIFDAVAAGCIPVVVSD 202
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BLAST of mRNA_P-wetherbeei_contig6705.1.1 vs. uniprot
Match: A0A7S0JL21_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JL21_9EUKA)

HSP 1 Score: 46.6 bits (109), Expect = 4.670e-5
Identity = 19/37 (51.35%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   40 EEVFGSKFCFVFACDDPQTSRFYDAVAAGCIPIIVND 150
            EE+  S FC V A D   +SRFY A+A+GCIP++++D
Sbjct:   58 EEMGMSSFCLVPAGDSATSSRFYSAIASGCIPVVISD 94
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6705.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A813FY25_POLGL4.780e-1265.12Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7S0GXC2_MICPS4.220e-551.28Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S0JL21_9EUKA4.670e-551.35Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6705contigP-wetherbeei_contig6705:2226..2387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog159749.K0SXS2
PFAMsExostosin
Model size162
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.62e-07
EggNOG OGs2F00R@1|root,2T18Y@2759|Eukaryota
DescriptionExostosin family
Cds size162
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186931.4035873-CDS-P-wetherbeei_contig6705:2225..23871683186931.4035873-CDS-P-wetherbeei_contig6705:2225..2387Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6705 2226..2387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6705.1.1prot_P-wetherbeei_contig6705.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6705 2226..2387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6705.1.1

>prot_P-wetherbeei_contig6705.1.1 ID=prot_P-wetherbeei_contig6705.1.1|Name=mRNA_P-wetherbeei_contig6705.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=54bp
VSNDHAASPEAYREEVFGSKFCFVFACDDPQTSRFYDAVAAGCIPIIVND
HFR*
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mRNA from alignment at P-wetherbeei_contig6705:2226..2387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6705.1.1 ID=mRNA_P-wetherbeei_contig6705.1.1|Name=mRNA_P-wetherbeei_contig6705.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig6705:2226..2387+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAGCAATGACCACGCAGCGTCGCCGGAGGCGTACCGCGAGGAGGTTTT
CGGCTCCAAGTTCTGCTTCGTCTTCGCCTGCGACGACCCGCAGACGTCGC
GGTTTTATGACGCGGTGGCGGCCGGCTGCATCCCCATCATCGTCAACGAC
CACTTCCGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6705:2226..2387+

>mRNA_P-wetherbeei_contig6705.1.1 ID=mRNA_P-wetherbeei_contig6705.1.1|Name=mRNA_P-wetherbeei_contig6705.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig6705:2226..2387+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAGCAATGACCACGCAGCGTCGCCGGAGGCGTACCGCGAGGAGGTTTT
CGGCTCCAAGTTCTGCTTCGTCTTCGCCTGCGACGACCCGCAGACGTCGC
GGTTTTATGACGCGGTGGCGGCCGGCTGCATCCCCATCATCGTCAACGAC
CACTTCCGGTGA
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