mRNA_P-wetherbeei_contig67.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig67.5.1
Unique NamemRNA_P-wetherbeei_contig67.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig67.5.1 vs. uniprot
Match: D7FRM9_ECTSI (40S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM9_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 2.590e-38
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    4 ENQGIKLAKVNRVLGRTGNTGNVTQVRVEFLDDPSRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            +NQGIKLAKVN+VLGRTGNTGNVTQVRVEFLDDP+RSIIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    2 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
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BLAST of mRNA_P-wetherbeei_contig67.5.1 vs. uniprot
Match: F0XVZ1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVZ1_AURAN)

HSP 1 Score: 123 bits (309), Expect = 1.020e-35
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:   16 IKLAKVNRVLGRTGNTGNVTQVRVEFLDDPSRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            IKLAK+NRVLGRTGNTGNVTQVRVEF+DDP+RSIIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    6 IKLAKINRVLGRTGNTGNVTQVRVEFIDDPNRSIIRNVKGPVREGDILCLLEWEREARRLR 66
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BLAST of mRNA_P-wetherbeei_contig67.5.1 vs. uniprot
Match: A0A836CPG2_9STRA (40S ribosomal protein S28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG2_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.750e-33
Identity = 55/61 (90.16%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:   16 IKLAKVNRVLGRTGNTGNVTQVRVEFLDDPSRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            +KLAKV+RVLGRTGNTGNVTQVRV+F+DD SR+IIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    5 VKLAKVSRVLGRTGNTGNVTQVRVDFMDDSSRTIIRNVKGPVREGDILCLLEWEREARRLR 65
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BLAST of mRNA_P-wetherbeei_contig67.5.1 vs. uniprot
Match: B7GCW6_PHATC (Predicted protein n=4 Tax=Naviculales TaxID=38748 RepID=B7GCW6_PHATC)

HSP 1 Score: 112 bits (281), Expect = 1.970e-31
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:   10 QGIKLAKVNRVLGRTGNTGNVTQVRVEFLD--DPSRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            Q +KLAKVNRVLGRTGNTGNVTQVRVEF+D     RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:    3 QPVKLAKVNRVLGRTGNTGNVTQVRVEFMDAEGAGRSIVRNVKGPVREGDILCLLEWEREARRLR 67
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BLAST of mRNA_P-wetherbeei_contig67.5.1 vs. uniprot
Match: A0A7S0CCP2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCP2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.140e-30
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:   10 QGIKLAKVNRVLGRTGNTGNVTQVRVEFLDDPS------RSIIRNVKGPVREGDILCLLEWEREARRLR 198
            Q +KLAKV+RVLGRTGNTGNVTQVRVEF+DD +      RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:   36 QPVKLAKVSRVLGRTGNTGNVTQVRVEFMDDGNAGGQAGRSIVRNVKGPVREGDILCLLEWEREARRLR 104
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BLAST of mRNA_P-wetherbeei_contig67.5.1 vs. uniprot
Match: A0A4D9CYK0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYK0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 9.160e-30
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    4 ENQGIKLAKVNRVLGRTGNTGNVTQVRVEFLDDPSRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            ++Q +KL KV  V  RTG+TGNVTQVRVEFLDDP+RSI RNVKGPVREGD+LCLLEWER+ARRLR
Sbjct:    2 DSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 66
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BLAST of mRNA_P-wetherbeei_contig67.5.1 vs. uniprot
Match: K0SWS9_THAOC (Uncharacterized protein (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=K0SWS9_THAOC)

HSP 1 Score: 112 bits (280), Expect = 1.050e-29
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    4 ENQGIKLAKVNRVLGRTGNTGNVTQVRVEFLDDPS-----RSIIRNVKGPVREGDILCLLEWEREARRLR 198
            ++Q +KLAKVNRVLGRTGNTGNVTQVRVEF+D  +     RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct:  127 QDQPVKLAKVNRVLGRTGNTGNVTQVRVEFMDADAGTGTGRSIVRNVKGPVREGDILCLLEWEREARRLR 196
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BLAST of mRNA_P-wetherbeei_contig67.5.1 vs. uniprot
Match: K3WAC4_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WAC4_GLOUD)

HSP 1 Score: 108 bits (269), Expect = 1.340e-29
Identity = 53/59 (89.83%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:   22 LAKVNRVLGRTGNTGNVTQVRVEFLDDPSRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            LAKV  VLGRTGNTGNVTQVRVEFL D  R IIRNVKGPVREGDILCLLEWEREARRLR
Sbjct:    9 LAKVVNVLGRTGNTGNVTQVRVEFLQDDKRKIIRNVKGPVREGDILCLLEWEREARRLR 67
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BLAST of mRNA_P-wetherbeei_contig67.5.1 vs. uniprot
Match: A0A2R5G0Q3_9STRA (40S ribosomal protein S28 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0Q3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.240e-29
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:   10 QGIKLAKVNRVLGRTGNTGNVTQVRVEFLDDPSRSIIRNVKGPVREGDILCLLEWEREARRLR 198
            Q + LA+V RVL RTG TGNVTQVRVEFLDD  RSIIRNVKGPVREGD+L LLEWEREARRLR
Sbjct:   10 QAVMLARVTRVLSRTGATGNVTQVRVEFLDDDPRSIIRNVKGPVREGDVLTLLEWEREARRLR 72
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BLAST of mRNA_P-wetherbeei_contig67.5.1 vs. uniprot
Match: A0A1E7FGX9_9STRA (Ribosomal protein S28e (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGX9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.110e-28
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   19 KLAKVNRVLGRTGNTGNVTQVRVEFLDDPS-----RSIIRNVKGPVREGDILCLLEWEREARRLR 198
            KLAKV++VLGRTGNTGNVTQVRVEF+D  S     RSI+RNVKGPVRE DILCLLEWEREARRLR
Sbjct:    1 KLAKVSKVLGRTGNTGNVTQVRVEFMDAESGAGSGRSIVRNVKGPVRENDILCLLEWEREARRLR 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig67.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRM9_ECTSI2.590e-3895.3840S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID... [more]
F0XVZ1_AURAN1.020e-3595.08Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CPG2_9STRA2.750e-3390.1640S ribosomal protein S28 n=1 Tax=Tribonema minus ... [more]
B7GCW6_PHATC1.970e-3186.15Predicted protein n=4 Tax=Naviculales TaxID=38748 ... [more]
A0A7S0CCP2_9STRA1.140e-3081.16Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A4D9CYK0_9STRA9.160e-3078.46Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K0SWS9_THAOC1.050e-2980.00Uncharacterized protein (Fragment) n=2 Tax=Thalass... [more]
K3WAC4_GLOUD1.340e-2989.83Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
A0A2R5G0Q3_9STRA6.240e-2982.5440S ribosomal protein S28 n=1 Tax=Hondaea fermenta... [more]
A0A1E7FGX9_9STRA2.110e-2881.54Ribosomal protein S28e (Fragment) n=1 Tax=Fragilar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig67contigP-wetherbeei_contig67:9596..9796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FRM9
Preferred namerps28
PFAMsRibosomal_S28e
Model size201
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC03279
KEGG koko:K02493,ko:K02979,ko:K07767,ko:K08767
KEGG ReactionR10806
KEGG Pathwayko03010,ko03320,ko04979,map03010,map03320,map04979
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000309,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0003824,GO:0004515,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0007444,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009066,GO:0009108,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009435,GO:0009888,GO:0009987,GO:0010467,GO:0012505,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016604,GO:0016740,GO:0016772,GO:0016779,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0030490,GO:0030867,GO:0031090,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034622,GO:0034627,GO:0034628,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035220,GO:0035295,GO:0042175,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042802,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0046034,GO:0046483,GO:0046496,GO:0048513,GO:0048731,GO:0048856,GO:0051186,GO:0051188,GO:0055086,GO:0060429,GO:0065003,GO:0070013,GO:0070566,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0072521,GO:0072524,GO:0072525,GO:0090304,GO:0090407,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1990904,GO:1990966
Exons1
Evalue4.25e-39
EggNOG OGsCOG2053@1|root,KOG3502@2759|Eukaryota
EC2.1.1.297,3.6.4.3
Descriptionribosomal protein
Cds size201
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03012,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186930.9124448-CDS-P-wetherbeei_contig67:9595..97961683186930.9124448-CDS-P-wetherbeei_contig67:9595..9796Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig67 9596..9796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig67.5.1prot_P-wetherbeei_contig67.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig67 9596..9796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig67.5.1

>prot_P-wetherbeei_contig67.5.1 ID=prot_P-wetherbeei_contig67.5.1|Name=mRNA_P-wetherbeei_contig67.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
QENQGIKLAKVNRVLGRTGNTGNVTQVRVEFLDDPSRSIIRNVKGPVREG
DILCLLEWEREARRLR*
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mRNA from alignment at P-wetherbeei_contig67:9596..9796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig67.5.1 ID=mRNA_P-wetherbeei_contig67.5.1|Name=mRNA_P-wetherbeei_contig67.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig67:9596..9796+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGAGAACCAAGGCATCAAGCTGGCCAAGGTGAACCGGGTGCTCGGACG
GACGGGCAACACGGGCAACGTGACCCAGGTCCGGGTAGAGTTCCTGGACG
ACCCGTCGCGTTCAATCATCCGCAACGTGAAAGGGCCCGTGCGGGAGGGC
GACATTCTGTGCTTGCTGGAATGGGAGCGAGAGGCACGCCGGCTGAGGTG
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig67:9596..9796+

>mRNA_P-wetherbeei_contig67.5.1 ID=mRNA_P-wetherbeei_contig67.5.1|Name=mRNA_P-wetherbeei_contig67.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig67:9596..9796+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGAGAACCAAGGCATCAAGCTGGCCAAGGTGAACCGGGTGCTCGGACG
GACGGGCAACACGGGCAACGTGACCCAGGTCCGGGTAGAGTTCCTGGACG
ACCCGTCGCGTTCAATCATCCGCAACGTGAAAGGGCCCGTGCGGGAGGGC
GACATTCTGTGCTTGCTGGAATGGGAGCGAGAGGCACGCCGGCTGAGGTG
A
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