mRNA_P-wetherbeei_contig6695.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6695.1.1
Unique NamemRNA_P-wetherbeei_contig6695.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6695.1.1 vs. uniprot
Match: D8LI08_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI08_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.480e-21
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 YWWNQDSEKICVYVPVTPETDRAAVDFSIRPRGIRLAIDGVTIVEGTPFRRLLPADCLWLMDKENEPPFLQLELYKEDDFQNWPDLLREGS 273
            YWWNQ+++ + VYVPV  + D   V+F  + R I L  DG  ++ GTPF R+   D L+++D +N+PP++QLEL+K  ++QNW D L E S
Sbjct:  190 YWWNQNADAVSVYVPVPKDFDAEKVEFVAKTRHISLKFDGEEVLAGTPFYRIDGYDSLFVLDSDNDPPYVQLELFKVREYQNWEDFLLEKS 280
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BLAST of mRNA_P-wetherbeei_contig6695.1.1 vs. uniprot
Match: A0A7S2V6G0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6G0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.040e-8
Identity = 27/84 (32.14%), Postives = 43/84 (51.19%), Query Frame = 1 
Query:    1 YWWNQDSEKICVYVPVTPETDRAAVDFSIRPRGIRLAIDGV-TIVEGTPFRRLLPADCLWLMDKENEPPFLQLELYKEDDFQNW 249
            Y W Q+  K+C+Y+PV    D++ VD       + L + G  T V G     + P D  W  + ++ PPF+ +EL K   ++NW
Sbjct:  119 YKWEQNHNKVCIYIPVDETVDKSDVDVEFEVHRLLLKLGGRDTKVGGLLGGTIKPEDSYWFWESDSSPPFITIELQKFKQYRNW 202
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6695.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI08_ECTSI1.480e-2145.05CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2V6G0_9STRA1.040e-832.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6695contigP-wetherbeei_contig6695:1046..1321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size276
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-18_001280.1
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186930.5132687-CDS-P-wetherbeei_contig6695:1045..13211683186930.5132687-CDS-P-wetherbeei_contig6695:1045..1321Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6695 1046..1321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6695.1.1prot_P-wetherbeei_contig6695.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6695 1046..1321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6695.1.1

>prot_P-wetherbeei_contig6695.1.1 ID=prot_P-wetherbeei_contig6695.1.1|Name=mRNA_P-wetherbeei_contig6695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
YWWNQDSEKICVYVPVTPETDRAAVDFSIRPRGIRLAIDGVTIVEGTPFR
RLLPADCLWLMDKENEPPFLQLELYKEDDFQNWPDLLREGSV
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mRNA from alignment at P-wetherbeei_contig6695:1046..1321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6695.1.1 ID=mRNA_P-wetherbeei_contig6695.1.1|Name=mRNA_P-wetherbeei_contig6695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig6695:1046..1321+ (Phaeothamnion wetherbeei SAG_119_79)
TATTGGTGGAACCAGGACAGCGAAAAGATCTGCGTGTATGTCCCCGTGAC
GCCCGAGACCGACCGCGCCGCTGTCGACTTCTCGATACGTCCGCGCGGCA
TCCGGCTCGCGATCGACGGCGTCACAATCGTGGAAGGGACGCCGTTCCGG
CGGCTGCTGCCGGCGGACTGCCTCTGGCTGATGGACAAGGAGAACGAGCC
GCCGTTCCTGCAGCTGGAGCTGTATAAGGAGGACGACTTTCAGAACTGGC
CGGATTTGCTGCGGGAAGGGTCAGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6695:1046..1321+

>mRNA_P-wetherbeei_contig6695.1.1 ID=mRNA_P-wetherbeei_contig6695.1.1|Name=mRNA_P-wetherbeei_contig6695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig6695:1046..1321+ (Phaeothamnion wetherbeei SAG_119_79)
TATTGGTGGAACCAGGACAGCGAAAAGATCTGCGTGTATGTCCCCGTGAC
GCCCGAGACCGACCGCGCCGCTGTCGACTTCTCGATACGTCCGCGCGGCA
TCCGGCTCGCGATCGACGGCGTCACAATCGTGGAAGGGACGCCGTTCCGG
CGGCTGCTGCCGGCGGACTGCCTCTGGCTGATGGACAAGGAGAACGAGCC
GCCGTTCCTGCAGCTGGAGCTGTATAAGGAGGACGACTTTCAGAACTGGC
CGGATTTGCTGCGGGAAGGGTCAGTT
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