mRNA_P-wetherbeei_contig6694.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6694.1.1
Unique NamemRNA_P-wetherbeei_contig6694.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6694.1.1 vs. uniprot
Match: A0A7S1ZEY6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZEY6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.190e-19
Identity = 50/105 (47.62%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:    7 MCVEECTCLNCSNNDRYHDDVQMARDLALARNPNCFDSKFKKHPQGV-KSG--------LVHRVGCHCRKSACLKKYCECFNQGVKCSLRCVCVECKNDFPRPPG 294
            +C   C CL C N  +Y    + A +  LARNPN FD+KFK    G  K G        + H++GC CRKSACLKKYCEC++  VKCS  C CV C+N    PPG
Sbjct:  552 LCGPNCRCLTCMNTLQYEQVRKDAINTILARNPNAFDTKFKATLTGAGKDGDSEEGQTKVAHKLGCKCRKSACLKKYCECYHANVKCSTNCRCVGCQN---MPPG 653
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BLAST of mRNA_P-wetherbeei_contig6694.1.1 vs. uniprot
Match: A0A6H5JPL0_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL0_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.670e-19
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 QTMCVEECTCLNCSNNDRYHDDVQMARDLALARNPNCFDSKFKKHPQGVKSGLVHRVGCHCRKSACLKKYCECFNQGVKCSLRCVCVECKN 273
            Q +C   C C +C NN         A +  L RNP  FD+KF++  +     +VH+ GC CRKSACLKKYCECFN+GV CS +C CV C+N
Sbjct:  398 QVVCTASCNCHHCYNNSNQESMRLQAINGVLERNPAAFDAKFRETEKH--DAVVHKTGCKCRKSACLKKYCECFNKGVACSEKCNCVACRN 486
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BLAST of mRNA_P-wetherbeei_contig6694.1.1 vs. uniprot
Match: A0A3M7KVS9_AUXPR (CRC domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KVS9_AUXPR)

HSP 1 Score: 96.7 bits (239), Expect = 1.900e-19
Identity = 43/94 (45.74%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:    7 MCVEECTCLNCSNNDRYHDDVQMARDLALARNPNCFDSKFKKHPQGVKSGLVHRVGCHCRKSACLKKYCECFNQGVKCSLRCVCVECKNDFPRP 288
             C   CTC++C+N +     VQ  R+  L RNPN FD K       V+SG+ HR GC+C+KS C+KKYCECF  G+ C   C C  CKN    P
Sbjct:  276 FCGPACTCVSCANREDNRGAVQQQREAILIRNPNAFDQKIAA--VDVESGVQHRRGCNCKKSGCIKKYCECFQAGIACGEHCKCEGCKNCVDNP 367
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BLAST of mRNA_P-wetherbeei_contig6694.1.1 vs. uniprot
Match: A0A1D2ADM9_AUXPR (CRC domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2ADM9_AUXPR)

HSP 1 Score: 96.7 bits (239), Expect = 2.140e-19
Identity = 43/94 (45.74%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:    7 MCVEECTCLNCSNNDRYHDDVQMARDLALARNPNCFDSKFKKHPQGVKSGLVHRVGCHCRKSACLKKYCECFNQGVKCSLRCVCVECKNDFPRP 288
             C   CTC++C+N +     VQ  R+  L RNPN FD K       V+SG+ HR GC+C+KS C+KKYCECF  G+ C   C C  CKN    P
Sbjct:  566 FCGPACTCVSCANREDNRGAVQQQREAILIRNPNAFDQKIAA--VDVESGVQHRRGCNCKKSGCIKKYCECFQAGIACGEHCKCEGCKNCVDNP 657
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BLAST of mRNA_P-wetherbeei_contig6694.1.1 vs. uniprot
Match: A0A4D9CLN2_9STRA (CRC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLN2_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.190e-19
Identity = 52/107 (48.60%), Postives = 63/107 (58.88%), Query Frame = 1 
Query:    1 QTMCVEECTCLNCSNN-DRYHDDVQMARDLALARNPNCFDSKFKKHPQGVKSGLVHRVGCHCRKSACLKKYCECFNQGVKCSLRCVCVECKN--DFPRPPGEAGMVA 312
            Q  C+  C C NC N   + H   +  R + + RNPN F +KF+  P G     VH+VGC CRKSACLKKYCECFN G +CS +C CV C+N     RP  EA M A
Sbjct:  405 QAFCIPSCNCQNCLNTAGQNHLRAEAIRQI-MERNPNAFQTKFR--PNG--EDAVHKVGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQNVAGLGRPYEEAVMAA 506
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BLAST of mRNA_P-wetherbeei_contig6694.1.1 vs. uniprot
Match: A0A2V3IYW8_9FLOR (Protein tesmin/TSO1-like CXC 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYW8_9FLOR)

HSP 1 Score: 95.9 bits (237), Expect = 2.440e-19
Identity = 44/91 (48.35%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   10 CVEECTCLNCSNNDRYHDDVQMARDLALARNPNCFDSKFKKHPQGVKSGL---VHRVGCHCRKSACLKKYCECFNQGVKCSLRCVCVECKN 273
            C   C C NC NN ++ ++ Q A +  L RNPN F  K K+ P GV   L    H+ GC+CRKS CLK+YCECF   V CS  C CV C+N
Sbjct:  145 CGPHCNCRNCRNNGQFPEEKQAAVESILERNPNAFQPKVKRKPAGVGGVLGREKHQKGCNCRKSGCLKRYCECFQASVLCSELCKCVNCRN 235
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BLAST of mRNA_P-wetherbeei_contig6694.1.1 vs. uniprot
Match: D8LP28_ECTSI (TSO1 transcription factor (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP28_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.840e-19
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 QTMCVEECTCLNCSNNDRYHDDVQMARDLALARNPNCFDSKFKKHPQGVKSGLVHRVGCHCRKSACLKKYCECFNQGVKCSLRCVCVECKN 273
            Q +C   C C +C NN         A +  L RNP  FD+KF++  +     +VH+ GC CRKSACLKKYCECFN+GV CS +C CV C+N
Sbjct:   44 QVVCTASCNCHHCYNNANQESMRLQAINGVLERNPAAFDAKFRETEKH--DAVVHKTGCKCRKSACLKKYCECFNKGVACSEKCNCVGCRN 132
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BLAST of mRNA_P-wetherbeei_contig6694.1.1 vs. uniprot
Match: G0QM15_ICHMG (Tesmin tso1-like cxc domain protein (Fragment) n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QM15_ICHMG)

HSP 1 Score: 89.7 bits (221), Expect = 3.840e-19
Identity = 38/90 (42.22%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:    7 MCVEECTCLNCSNNDRYHDDVQMARDLALARNPNCFDSKFKKHPQGVKSGLV-HRVGCHCRKSACLKKYCECFNQGVKCSLRCVCVECKN 273
             C + C C NC N +     ++ A+  A  RNP+ F  KF    Q    G+V H+ GC+C K+ C KKYCECFN G+KC+  C C  C+N
Sbjct:   35 FCNKSCICTNCGNTENNKKQIESAKQEAKMRNPDAFSQKFLVVKQNQYEGIVSHKKGCNCTKTQCTKKYCECFNAGIKCTENCKCENCEN 124
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BLAST of mRNA_P-wetherbeei_contig6694.1.1 vs. uniprot
Match: I2CP39_NANGC (Tesmin tso1-like cxc domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP39_NANGC)

HSP 1 Score: 95.5 bits (236), Expect = 4.020e-19
Identity = 51/107 (47.66%), Postives = 63/107 (58.88%), Query Frame = 1 
Query:    1 QTMCVEECTCLNCSNN-DRYHDDVQMARDLALARNPNCFDSKFKKHPQGVKSGLVHRVGCHCRKSACLKKYCECFNQGVKCSLRCVCVECKN--DFPRPPGEAGMVA 312
            Q  C+  C C NC N   + H   +  R + + RNPN F +KF+  P G     VH++GC CRKSACLKKYCECFN G +CS +C CV C+N     RP  EA M A
Sbjct:  243 QAFCIPSCNCQNCLNTAGQNHLRAEAIRQI-MERNPNAFQTKFR--PNG--EDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQNVAGLGRPYEEAVMAA 344
[Close]
BLAST of mRNA_P-wetherbeei_contig6694.1.1 vs. uniprot
Match: K8YUM5_NANGC (Tesmin tso1-like cxc domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUM5_NANGC)

HSP 1 Score: 95.5 bits (236), Expect = 4.030e-19
Identity = 51/107 (47.66%), Postives = 63/107 (58.88%), Query Frame = 1 
Query:    1 QTMCVEECTCLNCSNN-DRYHDDVQMARDLALARNPNCFDSKFKKHPQGVKSGLVHRVGCHCRKSACLKKYCECFNQGVKCSLRCVCVECKN--DFPRPPGEAGMVA 312
            Q  C+  C C NC N   + H   +  R + + RNPN F +KF+  P G     VH++GC CRKSACLKKYCECFN G +CS +C CV C+N     RP  EA M A
Sbjct:  243 QAFCIPSCNCQNCLNTAGQNHLRAEAIRQI-MERNPNAFQTKFR--PNG--EDAVHKMGCKCRKSACLKKYCECFNAGARCSDKCSCVGCQNVAGLGRPYEEAVMAA 344
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6694.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1ZEY6_9STRA1.190e-1947.62Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6H5JPL0_9PHAE1.670e-1948.35CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A3M7KVS9_AUXPR1.900e-1945.74CRC domain-containing protein n=1 Tax=Auxenochlore... [more]
A0A1D2ADM9_AUXPR2.140e-1945.74CRC domain-containing protein n=2 Tax=Auxenochlore... [more]
A0A4D9CLN2_9STRA2.190e-1948.60CRC domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A2V3IYW8_9FLOR2.440e-1948.35Protein tesmin/TSO1-like CXC 6 n=1 Tax=Gracilariop... [more]
D8LP28_ECTSI3.840e-1948.35TSO1 transcription factor (Partial) (Fragment) n=1... [more]
G0QM15_ICHMG3.840e-1942.22Tesmin tso1-like cxc domain protein (Fragment) n=1... [more]
I2CP39_NANGC4.020e-1947.66Tesmin tso1-like cxc domain-containing protein (Fr... [more]
K8YUM5_NANGC4.030e-1947.66Tesmin tso1-like cxc domain-containing protein (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6694contigP-wetherbeei_contig6694:368..1737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LP28
PFAMsHA,TCR
Model size678
Max annot lvl2759|Eukaryota
KEGG koko:K21776
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000785,GO:0000790,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006355,GO:0006996,GO:0007049,GO:0007140,GO:0007276,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045893,GO:0045935,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050794,GO:0051037,GO:0051039,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051321,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0071840,GO:0080090,GO:0140013,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons4
Evalue2.75e-19
EggNOG OGsKOG1171@1|root,KOG1171@2759|Eukaryota
DescriptionDNA-binding transcription factor activity
Cds size672
COG categoryS
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186930.4425755-UTR-P-wetherbeei_contig6694:367..3731683186930.4425755-UTR-P-wetherbeei_contig6694:367..373Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6694 368..373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186930.4543417-CDS-P-wetherbeei_contig6694:373..5021683186930.4543417-CDS-P-wetherbeei_contig6694:373..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6694 374..502 +
1683186930.4632668-CDS-P-wetherbeei_contig6694:837..9091683186930.4632668-CDS-P-wetherbeei_contig6694:837..909Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6694 838..909 +
1683186930.4728832-CDS-P-wetherbeei_contig6694:1154..15241683186930.4728832-CDS-P-wetherbeei_contig6694:1154..1524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6694 1155..1524 +
1683186930.4829948-CDS-P-wetherbeei_contig6694:1636..17371683186930.4829948-CDS-P-wetherbeei_contig6694:1636..1737Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6694 1637..1737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6694.1.1prot_P-wetherbeei_contig6694.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6694 374..1737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6694.1.1

>prot_P-wetherbeei_contig6694.1.1 ID=prot_P-wetherbeei_contig6694.1.1|Name=mRNA_P-wetherbeei_contig6694.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=224bp
MCVEECTCLNCSNNDRYHDDVQMARDLALARNPNCFDSKFKKHPQGVKSG
LVHRVGCHCRKSACLKKYCECFNQGVKCSLRCVCVECKNDFPRPPGEAGM
VAAAAVAAATGYGVKTVGNASGAAKKSKFAAAAAAAAAAIAAEEQPAAAA
RAADTEASSAARAAAARADAESAVRGAAAEGWRAARGKGDAAAAAAAAAA
TAAAAAAAAAAAVAAATAAAAEG*
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mRNA from alignment at P-wetherbeei_contig6694:368..1737+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6694.1.1 ID=mRNA_P-wetherbeei_contig6694.1.1|Name=mRNA_P-wetherbeei_contig6694.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1370bp|location=Sequence derived from alignment at P-wetherbeei_contig6694:368..1737+ (Phaeothamnion wetherbeei SAG_119_79)
CAGACGATGTGCGTAGAGGAGTGCACGTGCCTCAACTGCAGCAACAATGA
CCGCTACCACGACGATGTTCAGATGGCACGGGACCTCGCCCTCGCCCGCA
ACCCCAACTGCTTCGACTCCAAGTTCAAAAAGCACGTGCGTCACTTAACT
CTCTTTTTGTCTTCTTCCTCCTCTGTGCGTTGATCGGTTTTCGCGCGCGG
GAGGAGGAGTTGGGGAACATTTCTAACCTTGGTCGCAACAGAGGGATGCA
CACAAAGGAAGCGATGACCGCCGTTTCTTGCTCTCTCCAACCGCTTCCGC
CGTTGCGTGCCGCTGCTTGCCATCGCTGCTGCCGCTGCCGCGGCATGCTG
CCGGCCATATCTCACCGTCACTACCGCTGCCGCCACGCTCACGATCACCA
TCGCTGCCGCTGCCATCACAATCACCGTTGCCGCCATTGCCATTACCACT
GCCGTCGCTGCACGGCGCAGCCCCAGGGAGTCAAGTCAGGGCTGGTTCAC
CGCGTCGGCTGCCACTGCCGCAAGTCCGCCTGCCTCAAGAAGGTGATGTC
GCTGCTGTCGCCGGGTCGGTGCCTCCTTTGTTCTTTTCGGCCGCCGTCTT
CTCTTCCCCGGCACTGTACCGTCGCTTGTTATGGCGCCCGTTAGCGTCTC
TGCAAGCGTCCCCGAAAGGTCATAACCTGCAGTTCGTTGGCTGCATGGGT
TGCTCACCTCCCACTATGCTTCCATTTCCGTTTGACGCCGTCTGTCTGTC
GCGCCTTTCCTCCGATGCTTCTCACCTATGATGGCAGTACTGCGAGTGTT
TCAACCAGGGCGTCAAGTGCTCTCTGCGTTGTGTCTGCGTCGAGTGCAAG
AACGACTTCCCGCGGCCGCCGGGCGAGGCGGGCATGGTGGCGGCGGCCGC
CGTGGCCGCTGCGACGGGCTACGGCGTCAAGACGGTCGGGAACGCCTCGG
GCGCCGCCAAGAAGTCAAAGTTCGCCGCCGCGGCCGCCGCCGCCGCCGCG
GCCATCGCCGCCGAGGAGCAGCCGGCCGCCGCGGCGAGGGCTGCCGACAC
CGAGGCGAGTTCCGCCGCGAGGGCCGCCGCCGCCCGGGCGGATGCTGAGT
CGGCTGTCCGCGGCGCCGCGGCAGAAGGGTGGCGGGCTGCGCGCGGCAAG
GGCGACGGTTGCGGCGGCGGCGGCGGCGGTGGCGTGCATTCTGCGCGGGC
GGCGGCTGGTGACGGCACGCCACCGGTTAAACGGTGGCCGGATCCTCCCG
GCGTGGGCTCGGGCGGGAGCGGCGGCAGCAGCAGCGGCGGCGGCTGCGAC
GGCAGCAGCGGCGGCGGCTGCGGCGGCAGCTGCGGTGGCAGCTGCGACGG
CAGCAGCGGCCGAGGGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6694:368..1737+

>mRNA_P-wetherbeei_contig6694.1.1 ID=mRNA_P-wetherbeei_contig6694.1.1|Name=mRNA_P-wetherbeei_contig6694.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig6694:368..1737+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCGTAGAGGAGTGCACGTGCCTCAACTGCAGCAACAATGACCGCTA
CCACGACGATGTTCAGATGGCACGGGACCTCGCCCTCGCCCGCAACCCCA
ACTGCTTCGACTCCAAGTTCAAAAAGCACCCCCAGGGAGTCAAGTCAGGG
CTGGTTCACCGCGTCGGCTGCCACTGCCGCAAGTCCGCCTGCCTCAAGAA
GTACTGCGAGTGTTTCAACCAGGGCGTCAAGTGCTCTCTGCGTTGTGTCT
GCGTCGAGTGCAAGAACGACTTCCCGCGGCCGCCGGGCGAGGCGGGCATG
GTGGCGGCGGCCGCCGTGGCCGCTGCGACGGGCTACGGCGTCAAGACGGT
CGGGAACGCCTCGGGCGCCGCCAAGAAGTCAAAGTTCGCCGCCGCGGCCG
CCGCCGCCGCCGCGGCCATCGCCGCCGAGGAGCAGCCGGCCGCCGCGGCG
AGGGCTGCCGACACCGAGGCGAGTTCCGCCGCGAGGGCCGCCGCCGCCCG
GGCGGATGCTGAGTCGGCTGTCCGCGGCGCCGCGGCAGAAGGGTGGCGGG
CTGCGCGCGGCAAGGGCGACGCGGCGGCAGCAGCAGCGGCGGCGGCTGCG
ACGGCAGCAGCGGCGGCGGCTGCGGCGGCAGCTGCGGTGGCAGCTGCGAC
GGCAGCAGCGGCCGAGGGATGA
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