mRNA_P-wetherbeei_contig6690.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6690.1.1
Unique NamemRNA_P-wetherbeei_contig6690.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6690.1.1 vs. uniprot
Match: A0A6B0USQ1_IXORI (Uncharacterized protein ycf68 (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A6B0USQ1_IXORI)

HSP 1 Score: 203 bits (517), Expect = 6.830e-65
Identity = 101/112 (90.18%), Postives = 102/112 (91.07%), Query Frame = 1
Query:    1 GGAWLSSARVVRCWVKSRNERNPRSMLPACPFGGGGDS*ETAGVNSEEGGDDVKSSCPLCPGLHACYNGRYKGLRCCKAERIPKSRSQFGLGSATRPHEVGVASNRRSATLR 336
            GGAWLSSARVVRCWVKSRNERNPRSMLPA    GGGDS ETAGVNSEEGGDDVKSSCPLC GLHACYNGRY GLR C+ E IPKSRSQFGLGSATRPHEVGVASNRRSATLR
Sbjct:   30 GGAWLSSARVVRCWVKSRNERNPRSMLPAR---GGGDSWETAGVNSEEGGDDVKSSCPLCLGLHACYNGRYNGLRYCEVELIPKSRSQFGLGSATRPHEVGVASNRRSATLR 138          
BLAST of mRNA_P-wetherbeei_contig6690.1.1 vs. uniprot
Match: A0A0J8BFL5_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BFL5_BETVV)

HSP 1 Score: 177 bits (450), Expect = 3.980e-55
Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = 2
Query:  152 MTSSHHAPYVQGFTHATMAGTKGCDAVRRSESQKAGLSSDWGLQLDPMKSESLVIADQQRCGEYVPGPCTHRPSRHESRQHPKPVAQPLWREPSKVGLA 448
            MTSSHHAPYVQGFTHATMAGT  CD VR SES+KAGLSSDWGLQLDPMKSESLVIADQQRCGEYVPGPCTHRPSRHESRQHPKPVAQP   E +  G A
Sbjct:    1 MTSSHHAPYVQGFTHATMAGTDRCDPVRGSESEKAGLSSDWGLQLDPMKSESLVIADQQRCGEYVPGPCTHRPSRHESRQHPKPVAQPPCGEGAVEGGA 99          
BLAST of mRNA_P-wetherbeei_contig6690.1.1 vs. uniprot
Match: D9VQ25_9ACTN (Uncharacterized protein n=8 Tax=Streptomyces TaxID=1883 RepID=D9VQ25_9ACTN)

HSP 1 Score: 172 bits (435), Expect = 5.100e-53
Identity = 83/95 (87.37%), Postives = 84/95 (88.42%), Query Frame = 2
Query:  104 VGTHRRLPGSTRRKVGMTSSHHAPYVQGFTHATMAGTKGCDAVRRSESQKAGLSSDWGLQLDPMKSESLVIADQQRCGEYVPGPCTHRPSRHESR 388
            +GTHRR PGSTRRKVG TSSHHAPYV G T ATMAGT  CD VR SESQKAGLSSDWGLQLDPMKSESLVIADQ  CGEYVPGPCTHRPSRHESR
Sbjct:    1 MGTHRRPPGSTRRKVGTTSSHHAPYVLGCTRATMAGTMSCDTVRWSESQKAGLSSDWGLQLDPMKSESLVIADQHCCGEYVPGPCTHRPSRHESR 95          
BLAST of mRNA_P-wetherbeei_contig6690.1.1 vs. uniprot
Match: D6X5E0_STRE2 (Uncharacterized protein n=1 Tax=Streptomyces pristinaespiralis (strain ATCC 25486 / DSM 40338 / CBS 914.69 / JCM 4507 / NBRC 13074 / NRRL 2958 / 5647) TaxID=457429 RepID=D6X5E0_STRE2)

HSP 1 Score: 171 bits (433), Expect = 2.320e-52
Identity = 93/123 (75.61%), Postives = 96/123 (78.05%), Query Frame = 2
Query:  104 VGTHRRLPGSTRRKVGMTSSHHAPYVQGFTHATMAGTKGCDAVRRSESQKAGLSSDWGLQLDPMKSESLVIADQQRCGEYVPGPCTHRPSRHESRQHPKPVA---QPLWREPSKVGLAIGTKS 463
            +GTHRRLPGSTRRKVG TSSHHAPYV G T ATMAGTK C+AVRRSESQKAGLSSDWGLQLDPMKSE LVIADQ  CGEYVPGP    P    SR+   P A    P  RE SKVGLAIGTKS
Sbjct:    1 MGTHRRLPGSTRRKVGTTSSHHAPYVLGCTRATMAGTKSCEAVRRSESQKAGLSSDWGLQLDPMKSELLVIADQHCCGEYVPGPLYTPPV--TSRKSVTPEAGGPTPCGRELSKVGLAIGTKS 121          
BLAST of mRNA_P-wetherbeei_contig6690.1.1 vs. uniprot
Match: A0A255PXY7_9ACTN (Uncharacterized protein n=2 Tax=Streptomyces sp. FBKL.4005 TaxID=2015515 RepID=A0A255PXY7_9ACTN)

HSP 1 Score: 170 bits (430), Expect = 2.940e-52
Identity = 82/95 (86.32%), Postives = 83/95 (87.37%), Query Frame = 2
Query:  104 VGTHRRLPGSTRRKVGMTSSHHAPYVQGFTHATMAGTKGCDAVRRSESQKAGLSSDWGLQLDPMKSESLVIADQQRCGEYVPGPCTHRPSRHESR 388
            +GTH R PGSTRRKVG TSSHHAPYV G T ATMAGTK CD  R SESQKAGLSSDWGLQLDPMKSESLVIADQ  CGEYVPGPCTHRPSRHESR
Sbjct:    1 MGTHGRPPGSTRRKVGTTSSHHAPYVLGCTRATMAGTKSCDTARWSESQKAGLSSDWGLQLDPMKSESLVIADQHCCGEYVPGPCTHRPSRHESR 95          
BLAST of mRNA_P-wetherbeei_contig6690.1.1 vs. uniprot
Match: A4EB57_COLAA (Uncharacterized protein n=1 Tax=Collinsella aerofaciens (strain ATCC 25986 / DSM 3979 / JCM 10188 / KCTC 3647 / NCTC 11838 / VPI 1003) TaxID=411903 RepID=A4EB57_COLAA)

HSP 1 Score: 169 bits (429), Expect = 3.360e-51
Identity = 82/109 (75.23%), Postives = 91/109 (83.49%), Query Frame = 1
Query:    1 GGAWLSSARVVRCWVKSRNERNPRSMLPACPFGGGGDS*ETAGVNSEEGGDDVKSSCPLCPGLHACYNGRYKGLRCCKAERIPKSRSQFGLGSATRPHEVGVASNRRSA 327
            GGAWLSSARVVRCWVKSRNERNPR +LP+   G  G+   TA V +EEGGDDVKSSCPLCPGLH CYNGRY+G+   + ERIP+SR QFGLG+ATRPHEVGVASNR SA
Sbjct:   16 GGAWLSSARVVRCWVKSRNERNPRRVLPS---GDAGNPRGTAAVKAEEGGDDVKSSCPLCPGLHTCYNGRYRGMPPREGERIPESRPQFGLGAATRPHEVGVASNRGSA 121          
BLAST of mRNA_P-wetherbeei_contig6690.1.1 vs. uniprot
Match: D9UQ14_STRS3 (Uncharacterized protein n=2 Tax=Streptomyces TaxID=1883 RepID=D9UQ14_STRS3)

HSP 1 Score: 167 bits (423), Expect = 7.710e-51
Identity = 90/123 (73.17%), Postives = 92/123 (74.80%), Query Frame = 2
Query:  104 VGTHRRLPGSTRRKVGMTSSHHAPYVQGFTHATMAGTKGCDAVRRSESQKAGLSSDWGLQLDPMKSESLVIADQQRCGEYVPGPCTHRPSRHESRQHPKPVA---QPLWREPSKVGLAIGTKS 463
            +GTH R PGSTRRKVG TSSHHAPYV G T ATMAGT  CD  R SESQKAGLSSDWGLQLDPMKSE LVIADQ  CGEYVPGPCTH P    SR+   P A    P  RE SKVG AIGTKS
Sbjct:    1 MGTHGRPPGSTRRKVGTTSSHHAPYVLGCTRATMAGTMSCDTARWSESQKAGLSSDWGLQLDPMKSELLVIADQHCCGEYVPGPCTHLP--FSSRKSVTPEAGGPTPCGRELSKVGPAIGTKS 121          
BLAST of mRNA_P-wetherbeei_contig6690.1.1 vs. uniprot
Match: D5ZTV8_STRV1 (Uncharacterized protein (Fragment) n=1 Tax=Streptomyces viridosporus (strain ATCC 14672 / DSM 40746 / JCM 4963 / KCTC 9882 / NRRL B-12104 / FH 1290) TaxID=566461 RepID=D5ZTV8_STRV1)

HSP 1 Score: 165 bits (417), Expect = 9.860e-50
Identity = 92/136 (67.65%), Postives = 98/136 (72.06%), Query Frame = 1
Query:   82 PACPFGGGGDS*ETAGVNSEEGGDDVKSSCPLCPGLHACYNGRYKGLRCCKAERIPKSRSQFGLGSATRPHEVGVASNRRSATLR*IRS------RALYTPPVTSRKSATPEAGGPTLVEGAVEGGAGDWDEVVTR 471
            P  PFGG GDS ETAGVNSEEGGDDVKSSCPLC GLH CYNGRY  LR  + ERI KSRSQFGLGSATRPHEVGVASNRRSA LR + +       A +   V + +S  P   G    EGAVEGG GDWDEVVTR
Sbjct:    4 PTGPFGGAGDSRETAGVNSEEGGDDVKSSCPLCLGLHTCYNGRYNELRYREVERISKSRSQFGLGSATRPHEVGVASNRRSALLR-VNTFPGPVHTARHVTKVGNTRSRWPNPPG----EGAVEGGTGDWDEVVTR 134          
BLAST of mRNA_P-wetherbeei_contig6690.1.1 vs. uniprot
Match: A7B8Q3_9ACTO (Uncharacterized protein n=1 Tax=Schaalia odontolytica ATCC 17982 TaxID=411466 RepID=A7B8Q3_9ACTO)

HSP 1 Score: 162 bits (410), Expect = 2.720e-49
Identity = 77/88 (87.50%), Postives = 80/88 (90.91%), Query Frame = 2
Query:  122 LPGSTRRKVGMTSSHHAPYVQGFTHATMAGTKGCDAVRRSESQKAGLSSDWGLQLDPMKSESLVIADQQRCGEYVPGPCTHRPSRHES 385
            +PG TRRKVGMTS+HHAPYV GFTHATMAGT+GCD VR SES KA LSSDWGLQLDPMK ESLVIADQQRCGEYV GPCTHRPSRHES
Sbjct:    1 MPGLTRRKVGMTSNHHAPYVLGFTHATMAGTEGCDTVRWSESLKASLSSDWGLQLDPMKVESLVIADQQRCGEYVLGPCTHRPSRHES 88          
BLAST of mRNA_P-wetherbeei_contig6690.1.1 vs. uniprot
Match: A0A2I1P569_GARVA (Uncharacterized protein n=1 Tax=Gardnerella vaginalis TaxID=2702 RepID=A0A2I1P569_GARVA)

HSP 1 Score: 157 bits (396), Expect = 5.630e-47
Identity = 79/101 (78.22%), Postives = 82/101 (81.19%), Query Frame = 2
Query:  107 GTHRRLPGSTRRKVGMTSSHHAPYVQGFTHATMAGTKGCDAVRRSESQKAGLSSDWGLQLDPMKSESLVIADQQRCGEYVPGPCTHRPSRHESRQHPKPVA 409
            GTH   PG TRRKVGMTS HHAPYVQGFTHATMAGT GCD V  S S K GLSSD  LQLD +K+ESLVIA+QQR GE VPGPCTHRPS HES QHPKPVA
Sbjct:    3 GTHGGPPGLTRRKVGMTSDHHAPYVQGFTHATMAGTTGCDMVTWSGSLKTGLSSDRSLQLDYVKAESLVIANQQRRGECVPGPCTHRPSSHESGQHPKPVA 103          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6690.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B0USQ1_IXORI6.830e-6590.18Uncharacterized protein ycf68 (Fragment) n=2 Tax=E... [more]
A0A0J8BFL5_BETVV3.980e-5586.87Uncharacterized protein n=1 Tax=Beta vulgaris subs... [more]
D9VQ25_9ACTN5.100e-5387.37Uncharacterized protein n=8 Tax=Streptomyces TaxID... [more]
D6X5E0_STRE22.320e-5275.61Uncharacterized protein n=1 Tax=Streptomyces prist... [more]
A0A255PXY7_9ACTN2.940e-5286.32Uncharacterized protein n=2 Tax=Streptomyces sp. F... [more]
A4EB57_COLAA3.360e-5175.23Uncharacterized protein n=1 Tax=Collinsella aerofa... [more]
D9UQ14_STRS37.710e-5173.17Uncharacterized protein n=2 Tax=Streptomyces TaxID... [more]
D5ZTV8_STRV19.860e-5067.65Uncharacterized protein (Fragment) n=1 Tax=Strepto... [more]
A7B8Q3_9ACTO2.720e-4987.50Uncharacterized protein n=1 Tax=Schaalia odontolyt... [more]
A0A2I1P569_GARVA5.630e-4778.22Uncharacterized protein n=1 Tax=Gardnerella vagina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6690contigP-wetherbeei_contig6690:20..490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog411466.ACTODO_00002
Model size471
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.54e-44
EggNOG OGs2B47U@1|root,31WZ2@2|Bacteria,2IPAW@201174|Actinobacteria,4D6JC@85005|Actinomycetales
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186930.0692701-UTR-P-wetherbeei_contig6690:19..1701683186930.0692701-UTR-P-wetherbeei_contig6690:19..170Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6690 20..170 +
1683186930.1060588-UTR-P-wetherbeei_contig6690:485..4901683186930.1060588-UTR-P-wetherbeei_contig6690:485..490Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6690 486..490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186930.087635-CDS-P-wetherbeei_contig6690:170..4851683186930.087635-CDS-P-wetherbeei_contig6690:170..485Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6690 171..485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6690.1.1prot_P-wetherbeei_contig6690.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6690 171..485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6690.1.1

>prot_P-wetherbeei_contig6690.1.1 ID=prot_P-wetherbeei_contig6690.1.1|Name=mRNA_P-wetherbeei_contig6690.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MTSSHHAPYVQGFTHATMAGTKGCDAVRRSESQKAGLSSDWGLQLDPMKS
ESLVIADQQRCGEYVPGPCTHRPSRHESRQHPKPVAQPLWREPSKVGLAI
GTKS*
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mRNA from alignment at P-wetherbeei_contig6690:20..490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6690.1.1 ID=mRNA_P-wetherbeei_contig6690.1.1|Name=mRNA_P-wetherbeei_contig6690.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig6690:20..490+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC CCGCAACGAGCGCAACCCTCGTTCTATGTTGCCAGCATGCCCCTTTGGGG GTGGTGGGGACTCATAGGAGACTGCCGGGGTCAACTCGGAGGAAGGTGGG GATGACGTCAAGTCATCATGCCCCTTATGTCCAGGGCTTCACGCATGCTA CAATGGCCGGTACAAAGGGCTGCGATGCTGTAAGGCGGAGCGAATCCCAA AAAGCCGGTCTCAGTTCGGATTGGGGTCTGCAACTCGACCCCATGAAGTC GGAGTCGCTAGTAATCGCAGATCAGCAACGCTGCGGTGAATACGTTCCCG GGCCTTGTACACACCGCCCGTCACGTCACGAAAGTCGGCAACACCCGAAG CCGGTGGCCCAACCCTTGTGGAGGGAGCCGTCGAAGGTGGGGCTGGCGAT TGGGACGAAGTCGTAACAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6690:20..490+

>mRNA_P-wetherbeei_contig6690.1.1 ID=mRNA_P-wetherbeei_contig6690.1.1|Name=mRNA_P-wetherbeei_contig6690.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig6690:20..490+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTCAAGTCATCATGCCCCTTATGTCCAGGGCTTCACGCATGCTAC
AATGGCCGGTACAAAGGGCTGCGATGCTGTAAGGCGGAGCGAATCCCAAA
AAGCCGGTCTCAGTTCGGATTGGGGTCTGCAACTCGACCCCATGAAGTCG
GAGTCGCTAGTAATCGCAGATCAGCAACGCTGCGGTGAATACGTTCCCGG
GCCTTGTACACACCGCCCGTCACGTCACGAAAGTCGGCAACACCCGAAGC
CGGTGGCCCAACCCTTGTGGAGGGAGCCGTCGAAGGTGGGGCTGGCGATT
GGGACGAAGTCGTAA
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