mRNA_P-wetherbeei_contig6688.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6688.2.1
Unique NamemRNA_P-wetherbeei_contig6688.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6688.2.1 vs. uniprot
Match: A0A835Z3Q2_9STRA (Omp85 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Q2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.590e-12
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:    1 DALPSMVVNDVAVKDTTLIPKDVLSTAAVASGLLGSNCGVEELQTCARYIDGWYASNGYRVSRVVRAELLP 213
            + +P++VV DV V  T ++PK+VL+TA+V SGLLG+    + L  C R I+GWY S GY +S V  A + P
Sbjct:  130 ETVPTVVVQDVVVNGTQVLPKEVLNTASVESGLLGAPFDQKRLAACIRIINGWYNSQGYVLSTVAEASVFP 200
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BLAST of mRNA_P-wetherbeei_contig6688.2.1 vs. uniprot
Match: A0A6H5KZW3_9PHAE (Omp85 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZW3_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 6.810e-10
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    7 LPSMVVNDVAVKDTTLIPKDVLSTAAVASGLLGSNCGVEELQTCARYIDGWYASNGYRVSRVVRAELLP 213
            L  ++V DV V D ++IP+DVL++AAV SGLLG    VE +Q CAR +  WY   G+ +S VV A + P
Sbjct:  231 LSKVLVADVVV-DNSIIPRDVLTSAAVKSGLLGREASVERIQACARILSEWYQYEGHILSGVVNAAISP 298
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BLAST of mRNA_P-wetherbeei_contig6688.2.1 vs. uniprot
Match: D8LKK3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK3_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.260e-9
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:    7 LPSMVVNDVAVKDTTLIPKDVLSTAAVASGLLGSNCGVEELQTCARYIDGWYASNGYRVSRVVRAELLP 213
            L  ++V DV V D ++IP+DVL++AAV SGLLG    VE +Q CAR +  WY   G+  S VV A + P
Sbjct:   35 LSKVLVADVVV-DNSIIPRDVLASAAVKSGLLGREASVERIQACARILSEWYQYEGHIFSGVVNAAISP 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6688.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z3Q2_9STRA4.590e-1246.48Omp85 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A6H5KZW3_9PHAE6.810e-1047.83Omp85 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKK3_ECTSI1.260e-947.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6688contigP-wetherbeei_contig6688:2531..2752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size222
Hectar predicted targeting categoryother localisation
Exons1
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186929.8668396-UTR-P-wetherbeei_contig6688:2530..25451683186929.8668396-UTR-P-wetherbeei_contig6688:2530..2545Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6688 2531..2545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186929.8772388-CDS-P-wetherbeei_contig6688:2545..27521683186929.8772388-CDS-P-wetherbeei_contig6688:2545..2752Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6688 2546..2752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6688.2.1prot_P-wetherbeei_contig6688.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6688 2546..2752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6688.2.1

>prot_P-wetherbeei_contig6688.2.1 ID=prot_P-wetherbeei_contig6688.2.1|Name=mRNA_P-wetherbeei_contig6688.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
MVVNDVAVKDTTLIPKDVLSTAAVASGLLGSNCGVEELQTCARYIDGWYA
SNGYRVSRVVRAELLPEKG
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mRNA from alignment at P-wetherbeei_contig6688:2531..2752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6688.2.1 ID=mRNA_P-wetherbeei_contig6688.2.1|Name=mRNA_P-wetherbeei_contig6688.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig6688:2531..2752+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCGCTTCCCTCCATGGTTGTCAACGACGTGGCGGTGAAGGACACAAC
GCTAATCCCAAAGGACGTCCTGTCGACGGCCGCCGTCGCCAGCGGCCTCC
TCGGCTCCAACTGTGGCGTGGAAGAGCTTCAGACGTGCGCGCGCTACATC
GACGGGTGGTACGCCTCTAACGGCTACCGCGTCTCCCGGGTCGTAAGGGC
CGAACTACTCCCCGAGAAAGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6688:2531..2752+

>mRNA_P-wetherbeei_contig6688.2.1 ID=mRNA_P-wetherbeei_contig6688.2.1|Name=mRNA_P-wetherbeei_contig6688.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig6688:2531..2752+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTGTCAACGACGTGGCGGTGAAGGACACAACGCTAATCCCAAAGGA
CGTCCTGTCGACGGCCGCCGTCGCCAGCGGCCTCCTCGGCTCCAACTGTG
GCGTGGAAGAGCTTCAGACGTGCGCGCGCTACATCGACGGGTGGTACGCC
TCTAACGGCTACCGCGTCTCCCGGGTCGTAAGGGCCGAACTACTCCCCGA
GAAAGGT
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