mRNA_P-wetherbeei_contig6688.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6688.1.1
Unique NamemRNA_P-wetherbeei_contig6688.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6688.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6688contigP-wetherbeei_contig6688:61..1661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1601
Hectar predicted targeting categoryother localisation
Exons1
Cds size1077
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186929.8125734-UTR-P-wetherbeei_contig6688:60..5751683186929.8125734-UTR-P-wetherbeei_contig6688:60..575Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6688 61..575 -
1683186929.8340585-UTR-P-wetherbeei_contig6688:1652..16611683186929.8340585-UTR-P-wetherbeei_contig6688:1652..1661Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6688 1653..1661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186929.8233185-CDS-P-wetherbeei_contig6688:575..16521683186929.8233185-CDS-P-wetherbeei_contig6688:575..1652Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6688 576..1652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6688.1.1prot_P-wetherbeei_contig6688.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6688 576..1652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6688.1.1

>prot_P-wetherbeei_contig6688.1.1 ID=prot_P-wetherbeei_contig6688.1.1|Name=mRNA_P-wetherbeei_contig6688.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=359bp
MAVGHGGYPGAYQSTGQLAETLQGYAMHAAAWGRSPQQSVPIAQPPPPSQ
PAAPGQVQQPLTAAEVERLYDENDRAAAELVLLNLMLQKRTKVKTESGAQ
GGKNGSGSEGAAATTAGQVAEANGAAASGDGGGHGEGVSCDGTRGEKAKE
EPQEQELERRPQSHHMDSAVERRKQELLRGMRDRLRRLAAWNDTSIGMRE
RQLGQRSSRQLEIAAAAAAVAGPAGAYGGGSGGGATLYNEIGHRSAAAGS
MAMAEMAAAYGTPPTAAHPGAGPAVSHGGGYGYAGGGSGGISAASGVMGH
GQGYATPAGGGGRRAPSSRHKGVTLHQGRWAASIGVRGQAVPLGSYESEE
DAYNAILR*
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mRNA from alignment at P-wetherbeei_contig6688:61..1661-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6688.1.1 ID=mRNA_P-wetherbeei_contig6688.1.1|Name=mRNA_P-wetherbeei_contig6688.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1601bp|location=Sequence derived from alignment at P-wetherbeei_contig6688:61..1661- (Phaeothamnion wetherbeei SAG_119_79)
CCTCGCACGATGGCGGTGGGTCACGGAGGGTACCCGGGAGCATACCAATC
AACAGGGCAGCTGGCGGAGACGCTGCAAGGATACGCCATGCACGCTGCAG
CGTGGGGACGGTCTCCACAACAATCAGTTCCAATCGCGCAGCCCCCGCCG
CCATCGCAACCTGCGGCACCGGGGCAGGTCCAGCAGCCTTTAACGGCTGC
CGAAGTGGAGAGGTTGTACGACGAGAACGACCGCGCCGCTGCTGAGTTGG
TGCTGCTGAATTTAATGCTGCAGAAGAGGACCAAGGTAAAGACCGAGAGC
GGGGCACAAGGCGGCAAAAATGGAAGCGGCAGCGAAGGAGCGGCAGCGAC
GACGGCGGGACAGGTCGCCGAAGCGAATGGCGCAGCGGCGAGCGGTGACG
GCGGCGGACACGGCGAAGGAGTGAGCTGCGATGGCACGCGGGGAGAAAAG
GCCAAGGAAGAGCCGCAGGAGCAGGAGCTGGAGCGGCGGCCGCAGTCGCA
TCACATGGACTCGGCGGTGGAGCGCCGCAAGCAGGAGCTGCTGCGGGGAA
TGCGGGATCGCTTGCGCCGGCTGGCTGCGTGGAACGACACCTCCATCGGG
ATGCGCGAGAGGCAGCTCGGCCAGCGCAGCAGCAGGCAGCTCGAGATTGC
CGCCGCCGCCGCCGCCGTCGCCGGCCCCGCCGGCGCTTACGGGGGCGGCA
GCGGCGGCGGCGCCACTCTCTACAATGAGATTGGTCACCGCAGCGCCGCG
GCGGGCAGCATGGCTATGGCGGAGATGGCGGCGGCTTACGGCACGCCGCC
TACGGCGGCCCACCCCGGGGCGGGGCCCGCAGTGTCGCACGGCGGAGGCT
ACGGCTATGCCGGTGGCGGCAGTGGAGGCATAAGTGCCGCCTCAGGTGTC
ATGGGACACGGCCAGGGCTACGCGACGCCGGCCGGCGGTGGCGGCCGGCG
CGCGCCGTCCTCGCGCCACAAGGGGGTCACCCTGCACCAGGGCAGGTGGG
CGGCCAGCATTGGCGTCCGCGGCCAGGCGGTGCCCCTCGGCAGCTACGAG
AGCGAGGAGGACGCCTACAACGCCATTTTGAGGTGATGAGGAGGAAGGAA
AGAAGGGGTGACGAACAGGTGGCCGGCCGGCACCTGCGGGTGTTCTTGGT
TTGTGGAAGCTCTTCGTCGCTCCTTGCTCTTTATCGGTAGCCTATAGGGT
TTGCCGCTTGCGGAATGTGCTTAAGCAAGGCCACGCAATCTTTTCGTTTG
GCCTCTCGTTCGTCCCCACGAGGTTCTAGGTTTTTTTCGTACCCCTTTTC
AACAAGGCAAGGGAAGCGCAGAGTGGGTCTGTTTGTTTGGCTTCGCAATG
TGCCCGTGTTGTCGTGTAGCTGCTTGAATACCCATCGGCCGGGAAACGGG
CGCCGCCGCTCCAGCCAGCCGCCTGAGCCCACCCAGCTCGTTTCCTCGGT
GCCAGCCTTTTTCTCTCTCCTTTCTCCATCTGACCGATCCCATACGTGCC
ATGGGCGCTTCTCCCCGCCACTCCGCCGTGAACACCATACGCACGCCGCG
TCGCGTCATTTCGCTTGCCTCTCTGACCACTGACTGCAATGCTGCATGCC
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6688:61..1661-

>mRNA_P-wetherbeei_contig6688.1.1 ID=mRNA_P-wetherbeei_contig6688.1.1|Name=mRNA_P-wetherbeei_contig6688.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1077bp|location=Sequence derived from alignment at P-wetherbeei_contig6688:61..1661- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGTGGGTCACGGAGGGTACCCGGGAGCATACCAATCAACAGGGCA
GCTGGCGGAGACGCTGCAAGGATACGCCATGCACGCTGCAGCGTGGGGAC
GGTCTCCACAACAATCAGTTCCAATCGCGCAGCCCCCGCCGCCATCGCAA
CCTGCGGCACCGGGGCAGGTCCAGCAGCCTTTAACGGCTGCCGAAGTGGA
GAGGTTGTACGACGAGAACGACCGCGCCGCTGCTGAGTTGGTGCTGCTGA
ATTTAATGCTGCAGAAGAGGACCAAGGTAAAGACCGAGAGCGGGGCACAA
GGCGGCAAAAATGGAAGCGGCAGCGAAGGAGCGGCAGCGACGACGGCGGG
ACAGGTCGCCGAAGCGAATGGCGCAGCGGCGAGCGGTGACGGCGGCGGAC
ACGGCGAAGGAGTGAGCTGCGATGGCACGCGGGGAGAAAAGGCCAAGGAA
GAGCCGCAGGAGCAGGAGCTGGAGCGGCGGCCGCAGTCGCATCACATGGA
CTCGGCGGTGGAGCGCCGCAAGCAGGAGCTGCTGCGGGGAATGCGGGATC
GCTTGCGCCGGCTGGCTGCGTGGAACGACACCTCCATCGGGATGCGCGAG
AGGCAGCTCGGCCAGCGCAGCAGCAGGCAGCTCGAGATTGCCGCCGCCGC
CGCCGCCGTCGCCGGCCCCGCCGGCGCTTACGGGGGCGGCAGCGGCGGCG
GCGCCACTCTCTACAATGAGATTGGTCACCGCAGCGCCGCGGCGGGCAGC
ATGGCTATGGCGGAGATGGCGGCGGCTTACGGCACGCCGCCTACGGCGGC
CCACCCCGGGGCGGGGCCCGCAGTGTCGCACGGCGGAGGCTACGGCTATG
CCGGTGGCGGCAGTGGAGGCATAAGTGCCGCCTCAGGTGTCATGGGACAC
GGCCAGGGCTACGCGACGCCGGCCGGCGGTGGCGGCCGGCGCGCGCCGTC
CTCGCGCCACAAGGGGGTCACCCTGCACCAGGGCAGGTGGGCGGCCAGCA
TTGGCGTCCGCGGCCAGGCGGTGCCCCTCGGCAGCTACGAGAGCGAGGAG
GACGCCTACAACGCCATTTTGAGGTGA
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