mRNA_P-wetherbeei_contig6685.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6685.1.1
Unique NamemRNA_P-wetherbeei_contig6685.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6685.1.1 vs. uniprot
Match: A0A6H5KCA8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCA8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.960e-12
Identity = 83/264 (31.44%), Postives = 108/264 (40.91%), Query Frame = 1 
Query:   97 WDKFLLVVRRN--------GLPATKTVRLITLHREPKLLWASNHYEWLCHVKAIHTEFLRRSGGPPHCNINMTFVAEERKRRACANNGPKCGQDFNFCARPGDMTV---QADKIKMFHEM-----GTRDIRECAR--------------TAAAVAAAERNPGNTDVLAAEPEQLERCYAAAVRHFSAEVTWVGVTERMEESVCLFHSTFRLPVAHMPHTRLKECRPIDVWSDADVARVRVVDGLSYAVHRAANNVLDARLALAR 798
            W  F L+   N        G+P TKT R++   R P L  AS  +E +C           R G   H + N T + +E    A  N      + +NFC  P +M V   Q DK+    E      G  +   C R                    A + +  + DV AA     ER   AA+R     + WVGVTERMEES+CL   T     + MP  RLK  RPI VW +    +    D   + V  AAN+ LD RL  AR
Sbjct:  157 WKPFQLMFSHNRANVTDTIGIPPTKTPRVLITIRNPLLHKASIFFESVC-----------RFG--QHISDNGT-IDQEAATLARVNGKGVETEQYNFCRDP-EMWVGSKQFDKVYRNFEARWLSYGAAEGHPCIRPDPEFNRWRVDDTDVGGTCKAIKASGQDADVWAA---YFERTADAAIRRMEGAL-WVGVTERMEESLCLLFLTLGKKESEMPQHRLKTPRPITVWHEKAKEKAASYDRADWRVFEAANDFLDLRLWTAR 401
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BLAST of mRNA_P-wetherbeei_contig6685.1.1 vs. uniprot
Match: A0A7S4AB24_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AB24_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.030e-9
Identity = 76/292 (26.03%), Postives = 119/292 (40.75%), Query Frame = 1 
Query:    1 QEYDLEDALDRLSGPQVAAFWDRQRFAYSHTPWDKF-----LLVVRRNGLPATKT--VRLITLHREPKLLWASNHYEWLCHVKAI--HTEFLRRSGGPPHCNINMTFV------------AEERKRRACANNGPKCGQDFNFCARPGDMTVQADKIKMFHEMGTRDIRECARTAAAVAAAERNPGNTDVLAAEPEQLERCYAAAVRHFSAEVTWVGVTERMEESVCLFHSTFRLPVAHMPHTRLKECRPIDVWSDADVARVRVVDGLSYAVHRAANNVLDARLALARSAVLA 813
            +E + E AL++        +W      Y+HT   +      LL   R  +P  K    RL+T+ R P  L AS  YE  C +        F   S   P   +N+T +            AE RK R C     K  + F+ C    D  ++ D +   H++  RD+     T  + + ++ +  + DV       L     A   ++  +     +TERM+ES+CLF+   ++      H+  K CRP+D W +             Y V RAAN V+D R+A  R  + A
Sbjct:  143 RETEFETALEKHPPDIDPDYWRSIGTLYTHTFLRRINQKEGLLEKLRREVPLLKEKRFRLMTIVRRPLDLAASRFYETKCRIGVYSGRKAFKNVSSCTP---VNLTAIKYQMLEEKEECLAETRKAR-CPFLVNKSARFFDVCGSI-DALLEIDGVHDLHDLHYRDLMGLLPTPPSHSRSKTSTFD-DVARYTIRDLGGLIDAN-ENYKEDFMMFLITERMKESLCLFYYHLKIEPVKERHSLYKTCRPLDFWEERQKRSFIETGTFDYTVWRAANAVMDVRMAAFRMEIKA 427
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BLAST of mRNA_P-wetherbeei_contig6685.1.1 vs. uniprot
Match: A0A448ZJ32_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJ32_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.160e-7
Identity = 68/282 (24.11%), Postives = 113/282 (40.07%), Query Frame = 1 
Query:   10 DLEDALDRLSGPQVAAFWDRQRFAYSH-----TPWDKFLLVVRRNGLPAT--KTVRLITLHREPKLLWASNHYEWLCHVKAIH-TEFLRRSGGPPHCNINMTFVAEE--RKRRAC--ANNGPKCG-------QDFNFCARPGDMTVQADKIKMFHEMGTRDIRECARTAAAVAAAERNPGNTDVLAAEPEQLERCYAAAVRHFSAEVTWVGVTERMEESVCLFHSTFRLPVAHMPHTRLKECRPIDVWSDADVARVRVVDGLSYAVHRAANNVLDARLALAR 798
            D E AL          +W      Y+H     T  +  LL   R  +P    K  RL+T+ R P  L AS+ +E  C +     +  +R +   P   +N+T ++E+  ++++ C       +CG         F  C     M  +       ++     + E      ++      P   DV     + L        + +  ++    +TERM+ES+CLFH  F++      H   K CRP+ +W +     V   +   Y V RAAN+V+D R+A  R
Sbjct:  172 DFEKALQEHPPEIDPNYWRNITAFYTHSFLRETDENXNLLXELRARVPVLEEKKFRLMTIVRRPLDLAASSFWETKCRIGTYSGSRGIRDAEICP--TVNLTAISEQMRQEKQECLAGTREKRCGFLLKKXEXFFEXCGSLDTMLERGGAHNQLYQSLMGFLPEPPEFERSM-----TPTLKDVAIYXIQDLGGLMDVH-KKYKEDIIMFLITERMKESLCLFHYHFKIEPVKERHALYKHCRPLRIWEERHKRIVEEREQFDYTVWRAANSVMDVRMAAMR 445
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6685.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KCA8_9PHAE1.960e-1231.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4AB24_9STRA4.030e-926.03Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448ZJ32_9STRA3.160e-724.11Uncharacterized protein n=2 Tax=Pseudo-nitzschia m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6685contigP-wetherbeei_contig6685:548..3125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LM89
Model size1130
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.83e-13
EggNOG OGs2F011@1|root,2T197@2759|Eukaryota
Cds size1128
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186929.7070754-CDS-P-wetherbeei_contig6685:549..10051683186929.7070754-CDS-P-wetherbeei_contig6685:549..1005Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6685 550..1005 -
1683186929.7177265-CDS-P-wetherbeei_contig6685:1390..17111683186929.7177265-CDS-P-wetherbeei_contig6685:1390..1711Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6685 1391..1711 -
1683186929.7303052-CDS-P-wetherbeei_contig6685:2044..21851683186929.7303052-CDS-P-wetherbeei_contig6685:2044..2185Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6685 2045..2185 -
1683186929.7407937-CDS-P-wetherbeei_contig6685:2560..26951683186929.7407937-CDS-P-wetherbeei_contig6685:2560..2695Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6685 2561..2695 -
1683186929.7543695-CDS-P-wetherbeei_contig6685:3050..31251683186929.7543695-CDS-P-wetherbeei_contig6685:3050..3125Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6685 3051..3125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6685.1.1prot_P-wetherbeei_contig6685.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6685 550..3125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6685.1.1

>prot_P-wetherbeei_contig6685.1.1 ID=prot_P-wetherbeei_contig6685.1.1|Name=mRNA_P-wetherbeei_contig6685.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=376bp
QEYDLEDALDRLSGPQVAAFWDRQRFAYSHTPWDKFLLVVRRNGLPATKT
VRLITLHREPKLLWASNHYEWLCHVKAIHTEFLRRSGGPPHCNINMTFVA
EERKRRACANNGPKCGQDFNFCARPGDMTVQADKIKMFHEMGTRDIRECA
RTAAAVAAAERNPGNTDVLAAEPEQLERCYAAAVRHFSAEVTWVGVTERM
EESVCLFHSTFRLPVAHMPHTRLKECRPIDVWSDADVARVRVVDGLSYAV
HRAANNVLDARLALARSAVLAMAGGGANPGGGAGDEDSVVTAAIAAASAE
RHIGPRCAEVFVAGPGGCDAAAGVGSGCGGAGGTGDGGGGGLGGLMGGLM
GSLLGSRRPDKSVVATAPALRPRQRR
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mRNA from alignment at P-wetherbeei_contig6685:548..3125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6685.1.1 ID=mRNA_P-wetherbeei_contig6685.1.1|Name=mRNA_P-wetherbeei_contig6685.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2578bp|location=Sequence derived from alignment at P-wetherbeei_contig6685:548..3125- (Phaeothamnion wetherbeei SAG_119_79)
CAGGAGTATGATTTGGAAGACGCCCTTGACCGGCTTTCAGGCCCGCAGGT
GGCGGCCTTCTGGGACCGGCAGCGGGTAAGAGAGATGACTGGGGCGGAGC
AGTGGCGCTGCGTTTGAGGCGGGTTTGTGGTATCGGCGGGGAGTCAGTCC
GCGACATGTGGCAGGCCCTTCCGCCTGCTTGTGGATCAGATTCTCTTGAT
CTACTGAACCTGGAAAAAATGTGTTAGTGTTCAATGGTGTTGCTTATCAT
CGATGGTCGGCATGGCCATTCATGCCGCTGCCAACTGCGTAACGCTGTCC
CCGCTGCCGTCTTGCGCTTACCTCTCAACTGCTGTGGCTGTGCTCATCAC
GCCCGCGCTTTCGCGGCCGCCGCTTCCTCCGTCTTTAACTTTTTTCCCGG
CAACCTCTCTTCCTCTCTCGAGGGAGGCAGTTTGCGTACAGCCACACGCC
GTGGGACAAGTTCCTGCTAGTGGTGCGCCGCAACGGGCTGCCGGCCACCA
AGACCGTCCGCCTCATCACGCTGCACCGCGAGCCGAAGCTGCTCTGGGCT
TCCAACCATTACGAGGTGAATAAAGGTTTTCTGGGATTTTTGGAGCTCGG
GAAACGGAAAGAAACGATTACCCGGCTGGCTTTCGTTCTCCCGGTGCTTT
CGATGGGAATGTTTGATGGCTTGCTCCTTCTAAGGTCAGTGAAAGAGCGC
GCCTTTTATTGGTCCGAGAGCGGCTTCTTCTTGCGTTCTGCTTGGAATTT
CTTCACAACATGGACAGCAATGTCTGCATGGCATTCCCAGCCGTCGCCTA
TTGCTGCTAAAATGGCGAGATAGTCTCACCGCTTGCTCCACTCGGCAGTC
CTTTCCTTGACCCAAAAGCCACGTGAACCGCCTTAGCACGCTCGTCCCGC
TCTCAACTCTGCGCCCTGCACCATTCGGAAAACGAACCAGTGGCTGTGCC
ACGTCAAGGCGATCCACACAGAGTTTCTCCGCCGCTCCGGTGGGCCGCCC
CACTGCAACATCAACATGACCTTCGTGGCGGAGGAGCGGAAGCGCCGCGC
CTGCGCCAACAACGGCCCCAAGTGCGGTCAGGTGAGGGCTGGTGGTCGAT
GGTGGCGGCGGCCGCGATTGTTGCCACGGAATATGAGCGCTTTTTCACGA
TGGTGATGGTGGCTGTGGCAAGGGTTGGCAGCGGTCTCAGCGGCGGCGGA
ATTGGCAGCACTGGCGCTTTTTGGGCAGCTGCTGCGTCAGCGGCAGCCTC
GGCCCGTACCGATCGATAGCAGAGAAATGCTATTTTGAAAAGCTTCTTTC
CGTGCTCGATATCTCGCTAACGCGGCATCCCTCTCCACTTTTCTTATTTG
TTGTGCCCCTTCATTTTCTTCTCTGGCCGCTCTTTGCTTCTCTCCGCCTC
CTCACCCCTGACAGGACTTTAATTTTTGTGCCCGCCCAGGAGACATGACC
GTCCAGGCCGACAAGATCAAAATGTTCCACGAGATGGGTACACGCGACAT
CCGCGAGTGCGCCCGGACCGCCGCCGCTGTCGCTGCCGCCGAGCGCAACC
CCGGCAACACCGATGTTTTGGCAGCGGAGCCGGAGCAGTTGGAGCGGTGT
TACGCGGCGGCGGTGCGGCACTTTTCGGCGGAGGTGACGTGGGTGGGCGT
GACGGAGCGGATGGAGGAGAGCGTGTGCCTCTTCCACTCGACCTTCCGGC
TCCCCGTCGCCCACATGCCGCACACGCGGCTTAAGGTGAGGCGGTCAGGC
GGCGGAATCTGATTGGGGAAAACCAGTCGACGATGCGGCCGCGAAGGGAG
AAAAAGATGCGGCCGCGAAGGGAGAGAAAGAGAAAGTTAGGGAACTTTTG
AGGGAGCGTGGCGGAGGGCTCTGAGGGAAGGGAGGGAGATTTCCGCCCGT
GGCCGCATCGTCACTCGACTGAGGTTGTTGAGAGCTTGCCAGTTGCATCC
ATGTTCGTCTTGTTGGCATGGCTGGCCTTAGTTCCTCCTCGCGACCACAC
ACGCGGGCGCCTCCCACCTTTCCATCTGCTTTTGCCTTCAAGACACGTTC
CAATTTTAACGTATTCCATTCGTTTCCATCCTCTCTTCTCCCCTTCTTGC
TTCTTGAAAATTATTCTCAGGAGTGCCGGCCAATCGACGTGTGGAGCGAC
GCAGACGTCGCTCGCGTCCGTGTTGTCGACGGCCTGTCTTACGCGGTCCA
CCGCGCGGCCAACAATGTCCTCGACGCCCGCCTTGCGCTCGCCCGCTCCG
CCGTCCTCGCCATGGCCGGCGGCGGCGCCAATCCCGGCGGCGGTGCCGGT
GACGAAGATTCGGTCGTGACGGCGGCGATCGCGGCGGCGTCGGCGGAGCG
GCACATCGGTCCGAGGTGCGCAGAAGTGTTTGTTGCGGGGCCGGGCGGCT
GCGACGCTGCCGCTGGCGTTGGAAGCGGGTGCGGGGGCGCGGGGGGGACA
GGCGACGGCGGCGGCGGCGGCCTCGGCGGGCTGATGGGCGGGCTGATGGG
CAGCCTTTTGGGCAGTCGGCGGCCCGACAAATCTGTGGTGGCGACTGCGC
CGGCGTTACGGCCACGGCAGAGGCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6685:548..3125-

>mRNA_P-wetherbeei_contig6685.1.1 ID=mRNA_P-wetherbeei_contig6685.1.1|Name=mRNA_P-wetherbeei_contig6685.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1128bp|location=Sequence derived from alignment at P-wetherbeei_contig6685:548..3125- (Phaeothamnion wetherbeei SAG_119_79)
CAGGAGTATGATTTGGAAGACGCCCTTGACCGGCTTTCAGGCCCGCAGGT
GGCGGCCTTCTGGGACCGGCAGCGGTTTGCGTACAGCCACACGCCGTGGG
ACAAGTTCCTGCTAGTGGTGCGCCGCAACGGGCTGCCGGCCACCAAGACC
GTCCGCCTCATCACGCTGCACCGCGAGCCGAAGCTGCTCTGGGCTTCCAA
CCATTACGAGTGGCTGTGCCACGTCAAGGCGATCCACACAGAGTTTCTCC
GCCGCTCCGGTGGGCCGCCCCACTGCAACATCAACATGACCTTCGTGGCG
GAGGAGCGGAAGCGCCGCGCCTGCGCCAACAACGGCCCCAAGTGCGGTCA
GGACTTTAATTTTTGTGCCCGCCCAGGAGACATGACCGTCCAGGCCGACA
AGATCAAAATGTTCCACGAGATGGGTACACGCGACATCCGCGAGTGCGCC
CGGACCGCCGCCGCTGTCGCTGCCGCCGAGCGCAACCCCGGCAACACCGA
TGTTTTGGCAGCGGAGCCGGAGCAGTTGGAGCGGTGTTACGCGGCGGCGG
TGCGGCACTTTTCGGCGGAGGTGACGTGGGTGGGCGTGACGGAGCGGATG
GAGGAGAGCGTGTGCCTCTTCCACTCGACCTTCCGGCTCCCCGTCGCCCA
CATGCCGCACACGCGGCTTAAGGAGTGCCGGCCAATCGACGTGTGGAGCG
ACGCAGACGTCGCTCGCGTCCGTGTTGTCGACGGCCTGTCTTACGCGGTC
CACCGCGCGGCCAACAATGTCCTCGACGCCCGCCTTGCGCTCGCCCGCTC
CGCCGTCCTCGCCATGGCCGGCGGCGGCGCCAATCCCGGCGGCGGTGCCG
GTGACGAAGATTCGGTCGTGACGGCGGCGATCGCGGCGGCGTCGGCGGAG
CGGCACATCGGTCCGAGGTGCGCAGAAGTGTTTGTTGCGGGGCCGGGCGG
CTGCGACGCTGCCGCTGGCGTTGGAAGCGGGTGCGGGGGCGCGGGGGGGA
CAGGCGACGGCGGCGGCGGCGGCCTCGGCGGGCTGATGGGCGGGCTGATG
GGCAGCCTTTTGGGCAGTCGGCGGCCCGACAAATCTGTGGTGGCGACTGC
GCCGGCGTTACGGCCACGGCAGAGGCGG
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