mRNA_P-wetherbeei_contig6684.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6684.1.1
Unique NamemRNA_P-wetherbeei_contig6684.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6684.1.1 vs. uniprot
Match: A0A846FN29_9CYAN (Rieske 2Fe-2S domain-containing protein n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846FN29_9CYAN)

HSP 1 Score: 190 bits (483), Expect = 2.100e-55
Identity = 88/145 (60.69%), Postives = 111/145 (76.55%), Query Frame = 1
Query:    7 FEWFRQWYPLRAVDFLDVSRPHAVQLLGRELVLWNDGAA-WRCYEDACPHRMAPLSEGRVERDGSLMCAYHAWRFAGPDGRCVDIPQSP-PEVKQKHQSMPSACARSYPVNVAQGIIFVWPESGPAAEAASAEQSPPLIPELDDS 435
            F+W +QWYP+  VDFLD +RPHA+QLLG++LVLW DGA  WRC+ED CPHR+APLSEGRVE DG+LMCAYHAWRF G DG+CV+IPQS  P+ + K+ S   + A  YP    QG+++VWPESG  A   S  Q+P +IPEL+D+
Sbjct:   34 FQWTKQWYPIAVVDFLDPARPHAIQLLGQDLVLWRDGAGIWRCFEDFCPHRLAPLSEGRVESDGTLMCAYHAWRF-GADGKCVNIPQSKDPQTEAKNCSNHKSAAVVYPTQERQGLLWVWPESGSQAALESQLQTPRIIPELEDN 177          
BLAST of mRNA_P-wetherbeei_contig6684.1.1 vs. uniprot
Match: A0A352AHJ1_9CYAN ((2Fe-2S)-binding protein n=1 Tax=Cyanobacteria bacterium UBA9273 TaxID=2055791 RepID=A0A352AHJ1_9CYAN)

HSP 1 Score: 189 bits (481), Expect = 3.400e-55
Identity = 86/146 (58.90%), Postives = 111/146 (76.03%), Query Frame = 1
Query:    1 ERFEWFRQWYPLRAVDFLDVSRPHAVQLLGRELVLWNDGAA-WRCYEDACPHRMAPLSEGRVERDGSLMCAYHAWRFAGPDGRCVDIPQSPP-EVKQKHQSMPSACARSYPVNVAQGIIFVWPESGPAAEAASAEQSPPLIPELDD 432
            E F+W +QWYP+  VDFLD SRPHA+QLLG+++VLW DG+  WRC+EDACPHR+ PLSEGRVE DG+L+CAYHAWRF   +G CV IPQS   E + KH S   +CA +YP    QG+++VWPESG AA+  S  ++P +IPEL++
Sbjct:   24 ELFQWTKQWYPVAVVDFLDPSRPHAMQLLGKDIVLWRDGSRQWRCFEDACPHRLVPLSEGRVESDGTLLCAYHAWRFDA-EGNCVSIPQSKDQETEAKHCSNKKSCAVTYPTQERQGLLWVWPESGQAAQVESQLRTPRIIPELEE 168          
BLAST of mRNA_P-wetherbeei_contig6684.1.1 vs. uniprot
Match: A0A3B8Y4E0_9CYAN ((2Fe-2S)-binding protein (Fragment) n=1 Tax=Cyanothece sp. UBA12306 TaxID=2055757 RepID=A0A3B8Y4E0_9CYAN)

HSP 1 Score: 184 bits (466), Expect = 3.110e-54
Identity = 83/146 (56.85%), Postives = 106/146 (72.60%), Query Frame = 1
Query:    1 ERFEWFRQWYPLRAVDFLDVSRPHAVQLLGRELVLWNDG-AAWRCYEDACPHRMAPLSEGRVERDGSLMCAYHAWRFAGPDGRCVDIPQSPPEVKQK-HQSMPSACARSYPVNVAQGIIFVWPESGPAAEAASAEQSPPLIPELDD 432
            E F+W +QWYP+  V+FLD SRPH +QLLG+ELVLW D    WRC+ED CPHR+ PLSEGRVERDG+L+CAYHAWRF    G+CV IPQS  +  +K H + P +CA +YP     G+I++WPESG  AE  S  + P +IPEL++
Sbjct:   22 ETFQWTKQWYPMAVVEFLDPSRPHPIQLLGKELVLWRDRHKQWRCFEDRCPHRLVPLSEGRVERDGTLLCAYHAWRF-NETGQCVSIPQSKDQATEKRHLADPKSCAIAYPTQERLGLIWIWPESGTQAEQESQTREPRIIPELEE 166          
BLAST of mRNA_P-wetherbeei_contig6684.1.1 vs. uniprot
Match: A0A6P0S377_9CYAN (Rieske 2Fe-2S domain-containing protein n=2 Tax=unclassified Symploca TaxID=2620434 RepID=A0A6P0S377_9CYAN)

HSP 1 Score: 186 bits (473), Expect = 5.150e-54
Identity = 81/147 (55.10%), Postives = 110/147 (74.83%), Query Frame = 1
Query:    1 ERFEWFRQWYPLRAVDFLDVSRPHAVQLLGRELVLWND-GAAWRCYEDACPHRMAPLSEGRVERDGSLMCAYHAWRFAGPDGRCVDIPQSPP-EVKQKHQSMPSACARSYPVNVAQGIIFVWPESGPAAEAASAEQSPPLIPELDDS 435
            E+F+W +QWYP+   +FLD SRPHA+QLLG+ LVLW D    W C+++ACPHR+ PLSEGRVE DG+L+CAYHAWRF G +GRCV IPQS   E + KH + P +CA SYP    QG++++WPESG   +  S ++SP ++PEL+++
Sbjct:   24 EQFQWTKQWYPVAVAEFLDSSRPHAIQLLGKNLVLWRDHNKQWHCFDNACPHRLVPLSEGRVESDGTLLCAYHAWRFDG-EGRCVKIPQSKDKETEAKHCANPKSCAISYPTQERQGLVWIWPESGTQGQIESRQRSPRIVPELEEN 169          
BLAST of mRNA_P-wetherbeei_contig6684.1.1 vs. uniprot
Match: A0A7C3VRV4_9CYAN ((2Fe-2S)-binding protein n=1 Tax=Planktothricoides sp. SpSt-374 TaxID=2282167 RepID=A0A7C3VRV4_9CYAN)

HSP 1 Score: 183 bits (464), Expect = 6.050e-54
Identity = 82/145 (56.55%), Postives = 104/145 (71.72%), Query Frame = 1
Query:    1 ERFEWFRQWYPLRAVDFLDVSRPHAVQLLGRELVLWNDGAA-WRCYEDACPHRMAPLSEGRVERDGSLMCAYHAWRFAGPDGRCVDIPQSP-PEVKQKHQSMPSACARSYPVNVAQGIIFVWPESGPAAEAASAEQSPPLIPELD 429
            E F W +QWYP+  V+FLD  RPH +QLLG+ +VLW DG   WRC+ED CPHR+APLSEGRVE DG+L+CAYHAWRF    G CV IPQS   E++ KH + P +CA  YP    QG+++VWPESG  A+  S E+ P ++PEL+
Sbjct:   10 ELFTWTKQWYPVAVVEFLDCDRPHGMQLLGKNIVLWRDGTGKWRCFEDTCPHRLAPLSEGRVESDGTLLCAYHAWRFDSA-GNCVSIPQSKNEEIEAKHCANPKSCAVGYPTQERQGLLWVWPESGVKAQLESQERIPRIVPELE 153          
BLAST of mRNA_P-wetherbeei_contig6684.1.1 vs. uniprot
Match: K9UMA3_CHAP6 (Ring-hydroxylating dioxygenase, large terminal subunit n=2 Tax=Chamaesiphon TaxID=217161 RepID=K9UMA3_CHAP6)

HSP 1 Score: 184 bits (468), Expect = 1.890e-53
Identity = 83/143 (58.04%), Postives = 106/143 (74.13%), Query Frame = 1
Query:    7 FEWFRQWYPLRAVDFLDVSRPHAVQLLGRELVLWNDGAA-WRCYEDACPHRMAPLSEGRVERDGSLMCAYHAWRFAGPDGRCVDIPQSP-PEVKQKHQSMPSACARSYPVNVAQGIIFVWPESGPAAEAASAEQSPPLIPELD 429
            F+W  QWYP+  V+FLD S+PHA QLLG+ +VLW DGA  W+C+EDACPHR+APLSEGRVE DG+L+CAYH WRF G DG C  IPQS  PE++ +H++ P +CA SYP   AQG+++VW ESG      S  +SP +I EL+
Sbjct:   21 FQWMPQWYPVAVVEFLDPSKPHAFQLLGKNVVLWRDGAQQWQCFEDACPHRLAPLSEGRVEADGTLLCAYHGWRFGG-DGNCTKIPQSQSPELEAQHRANPKSCAISYPTQQAQGLLWVWAESGAKGAVESKNRSPRIISELE 162          
BLAST of mRNA_P-wetherbeei_contig6684.1.1 vs. uniprot
Match: A0A856MM91_9CYAN ((2Fe-2S)-binding protein n=1 Tax=Brasilonema sennae CENA114 TaxID=415709 RepID=A0A856MM91_9CYAN)

HSP 1 Score: 185 bits (470), Expect = 1.940e-53
Identity = 82/143 (57.34%), Postives = 110/143 (76.92%), Query Frame = 1
Query:    7 FEWFRQWYPLRAVDFLDVSRPHAVQLLGRELVLWNDGAA-WRCYEDACPHRMAPLSEGRVERDGSLMCAYHAWRFAGPDGRCVDIPQS-PPEVKQKHQSMPSACARSYPVNVAQGIIFVWPESGPAAEAASAEQSPPLIPELD 429
            F+W +QWYP+  V+FLD SRPHA+QLLG+++VLW DG+  WRC+ED CPHR+APLSEGRVE DG+L+CAYHAWRF   +G CV IPQS   + + KH S P +CA ++P    QG+++VW ESGP A++ S  ++P L+PEL+
Sbjct:   42 FQWTKQWYPVAVVEFLDPSRPHAMQLLGKDIVLWRDGSGKWRCFEDFCPHRLAPLSEGRVEADGTLLCAYHAWRFDS-EGNCVSIPQSLDKQTEAKHCSNPKSCAVAFPTQECQGLLWVWSESGPQAQSESQLRTPRLVPELE 183          
BLAST of mRNA_P-wetherbeei_contig6684.1.1 vs. uniprot
Match: A0A3S0ZK62_CHLFR (Rieske domain-containing protein n=3 Tax=Chlorogloeopsis fritschii TaxID=1124 RepID=A0A3S0ZK62_CHLFR)

HSP 1 Score: 184 bits (468), Expect = 2.550e-53
Identity = 84/147 (57.14%), Postives = 109/147 (74.15%), Query Frame = 1
Query:    1 ERFEWFRQWYPLRAVDFLDVSRPHAVQLLGRELVLWNDGAA-WRCYEDACPHRMAPLSEGRVERDGSLMCAYHAWRFAGPDGRCVDIPQSPP-EVKQKHQSMPSACARSYPVNVAQGIIFVWPESGPAAEAASAEQSPPLIPELDDS 435
            E F+W +QWYP+  VDFLD SRPHA+QLLG+++VLW DG+  WRC+ED CPHR+APLSEGRVE DG+LMCAYHAWRF   +G CV IPQS   + + KH S   +CA  YP    QG+++VW E+G  A+  S +++P +IPEL D+
Sbjct:   19 ELFQWAKQWYPVAVVDFLDPSRPHALQLLGKDIVLWRDGSGKWRCFEDFCPHRLAPLSEGRVESDGTLMCAYHAWRF-NSEGSCVSIPQSKDKQTEAKHLSNQKSCAVVYPTQECQGLLWVWAEAGTQAQLESQQRTPRIIPELRDN 164          
BLAST of mRNA_P-wetherbeei_contig6684.1.1 vs. uniprot
Match: UPI00047934FE (Rieske 2Fe-2S domain-containing protein n=1 Tax=Fischerella sp. PCC 9605 TaxID=1173024 RepID=UPI00047934FE)

HSP 1 Score: 184 bits (468), Expect = 2.820e-53
Identity = 83/144 (57.64%), Postives = 109/144 (75.69%), Query Frame = 1
Query:    7 FEWFRQWYPLRAVDFLDVSRPHAVQLLGRELVLWNDGAA-WRCYEDACPHRMAPLSEGRVERDGSLMCAYHAWRFAGPDGRCVDIPQSPPE-VKQKHQSMPSACARSYPVNVAQGIIFVWPESGPAAEAASAEQSPPLIPELDD 432
            F+W +QWYP+  V FLD SRPHA+QLLG+ LVLW DG+  WRC+ED CPHR+APLSEGRVE DG+LMCAYHAWRF   +G+CV IPQS  +  + K+ S P +CA +YP    QG+++VW E+GP A+  S  ++P ++PEL+D
Sbjct:   26 FQWTKQWYPVAVVGFLDSSRPHAMQLLGKNLVLWRDGSGKWRCFEDFCPHRLAPLSEGRVESDGTLMCAYHAWRFDS-EGKCVSIPQSKDQQTEAKNCSNPKSCAVAYPTQERQGLLWVWAEAGPQAQVESQLRTPRIVPELED 168          
BLAST of mRNA_P-wetherbeei_contig6684.1.1 vs. uniprot
Match: A0A1J1LET3_9CYAN (Rieske (2Fe-2S) region n=3 Tax=Planktothrix TaxID=54304 RepID=A0A1J1LET3_9CYAN)

HSP 1 Score: 184 bits (467), Expect = 2.830e-53
Identity = 84/147 (57.14%), Postives = 110/147 (74.83%), Query Frame = 1
Query:    1 ERFEWFRQWYPLRAVDFLDVSRPHAVQLLGRELVLWNDGAA-WRCYEDACPHRMAPLSEGRVERDGSLMCAYHAWRFAGPDGRCVDIPQSPP-EVKQKHQSMPSACARSYPVNVAQGIIFVWPESGPAAEAASAEQSPPLIPELDDS 435
            E+F+W +QWYP+ AV+F+D +RPH VQLLG+++VLW D +  WRC+ DACPHR+ PLSEGRVE DG+L+CAYHAWRF G +G CV IPQS   E + KH S P +CA  YP    QG+++VW ESG  A+  S  +SP LIPEL+++
Sbjct:   21 EQFQWTKQWYPVAAVEFIDPTRPHPVQLLGKDVVLWRDASGQWRCFADACPHRLVPLSEGRVESDGTLLCAYHAWRFDG-EGNCVSIPQSQDSETEAKHCSNPKSCAVVYPTQERQGLLWVWGESGSEAQQESLLKSPRLIPELEEN 166          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6684.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A846FN29_9CYAN2.100e-5560.69Rieske 2Fe-2S domain-containing protein n=1 Tax=Cy... [more]
A0A352AHJ1_9CYAN3.400e-5558.90(2Fe-2S)-binding protein n=1 Tax=Cyanobacteria bac... [more]
A0A3B8Y4E0_9CYAN3.110e-5456.85(2Fe-2S)-binding protein (Fragment) n=1 Tax=Cyanot... [more]
A0A6P0S377_9CYAN5.150e-5455.10Rieske 2Fe-2S domain-containing protein n=2 Tax=un... [more]
A0A7C3VRV4_9CYAN6.050e-5456.55(2Fe-2S)-binding protein n=1 Tax=Planktothricoides... [more]
K9UMA3_CHAP61.890e-5358.04Ring-hydroxylating dioxygenase, large terminal sub... [more]
A0A856MM91_9CYAN1.940e-5357.34(2Fe-2S)-binding protein n=1 Tax=Brasilonema senna... [more]
A0A3S0ZK62_CHLFR2.550e-5357.14Rieske domain-containing protein n=3 Tax=Chloroglo... [more]
UPI00047934FE2.820e-5357.64Rieske 2Fe-2S domain-containing protein n=1 Tax=Fi... [more]
A0A1J1LET3_9CYAN2.830e-5357.14Rieske (2Fe-2S) region n=3 Tax=Planktothrix TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6684contigP-wetherbeei_contig6684:228..920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1173020.Cha6605_5052
PFAMsPaO,Rieske
Model size462
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.1e-54
EggNOG OGsCOG4638@1|root,COG4638@2|Bacteria,1G43Y@1117|Cyanobacteria
DescriptionRieske (2Fe-2S) domain
Cds size462
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186929.671828-CDS-P-wetherbeei_contig6684:227..4251683186929.671828-CDS-P-wetherbeei_contig6684:227..425Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6684 228..425 -
1683186929.680785-CDS-P-wetherbeei_contig6684:656..9201683186929.680785-CDS-P-wetherbeei_contig6684:656..920Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6684 657..920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6684.1.1prot_P-wetherbeei_contig6684.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6684 228..920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6684.1.1

>prot_P-wetherbeei_contig6684.1.1 ID=prot_P-wetherbeei_contig6684.1.1|Name=mRNA_P-wetherbeei_contig6684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
ERFEWFRQWYPLRAVDFLDVSRPHAVQLLGRELVLWNDGAAWRCYEDACP
HRMAPLSEGRVERDGSLMCAYHAWRFAGPDGRCVDIPQSPPEVKQKHQSM
PSACARSYPVNVAQGIIFVWPESGPAAEAASAEQSPPLIPELDDSELLAA
GRCV
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mRNA from alignment at P-wetherbeei_contig6684:228..920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6684.1.1 ID=mRNA_P-wetherbeei_contig6684.1.1|Name=mRNA_P-wetherbeei_contig6684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=693bp|location=Sequence derived from alignment at P-wetherbeei_contig6684:228..920- (Phaeothamnion wetherbeei SAG_119_79)
GAGCGTTTCGAGTGGTTCAGGCAGTGGTACCCGCTTCGTGCAGTTGATTT TCTGGATGTGTCTCGCCCCCACGCAGTGCAGCTGCTGGGTCGCGAGCTGG TGCTGTGGAACGACGGCGCCGCATGGCGGTGCTACGAAGATGCCTGCCCG CACCGCATGGCGCCGCTGAGCGAAGGGCGGGTGGAGCGCGACGGCTCCCT CATGTGCGCCTATCATGCATGGCGGTTCGCCGGACCTGACGGACGCTGCG TCGACATCCCCCAGGTACGCGCTGCATTTCCGTCTATCTTGAATACATTT GCCACGTGAGGTGCAGAAAGGCGGCCTTTTCGGGATGGACAGTAGGACAG CACTGGTGACAAAAGCAATACGAGGCGACTTCGTGCCATCTTCTCTCTCT GTGTTTGCTTCTCCATAAGTGCTACACACATATGCAAATTTCCGGCCATT CATTCAACTGTCGTGTTTATGATACGTTTCGCCTGGCTACTGCAGAGTCC GCCGGAGGTCAAACAGAAGCACCAGTCGATGCCTTCAGCGTGCGCCAGGA GCTACCCCGTCAATGTGGCTCAGGGAATCATATTCGTGTGGCCCGAGTCC GGACCAGCAGCCGAGGCGGCGTCGGCAGAACAAAGCCCGCCCTTGATACC GGAGCTTGACGATTCTGAGCTACTCGCTGCGGGCAGGTGCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6684:228..920-

>mRNA_P-wetherbeei_contig6684.1.1 ID=mRNA_P-wetherbeei_contig6684.1.1|Name=mRNA_P-wetherbeei_contig6684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig6684:228..920- (Phaeothamnion wetherbeei SAG_119_79)
GAGCGTTTCGAGTGGTTCAGGCAGTGGTACCCGCTTCGTGCAGTTGATTT
TCTGGATGTGTCTCGCCCCCACGCAGTGCAGCTGCTGGGTCGCGAGCTGG
TGCTGTGGAACGACGGCGCCGCATGGCGGTGCTACGAAGATGCCTGCCCG
CACCGCATGGCGCCGCTGAGCGAAGGGCGGGTGGAGCGCGACGGCTCCCT
CATGTGCGCCTATCATGCATGGCGGTTCGCCGGACCTGACGGACGCTGCG
TCGACATCCCCCAGAGTCCGCCGGAGGTCAAACAGAAGCACCAGTCGATG
CCTTCAGCGTGCGCCAGGAGCTACCCCGTCAATGTGGCTCAGGGAATCAT
ATTCGTGTGGCCCGAGTCCGGACCAGCAGCCGAGGCGGCGTCGGCAGAAC
AAAGCCCGCCCTTGATACCGGAGCTTGACGATTCTGAGCTACTCGCTGCG
GGCAGGTGCGTG
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