mRNA_P-wetherbeei_contig6676.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6676.1.1
Unique NamemRNA_P-wetherbeei_contig6676.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6676.1.1 vs. uniprot
Match: A0A6H5KH38_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH38_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.390e-5
Identity = 33/79 (41.77%), Postives = 44/79 (55.70%), Query Frame = 2 
Query:  917 VRLPMGSSLSCAMSPDDTLASVLEALDVASVLGS---SRELELRCPVPLPGRVYCREELAAVTLAAAGLVPRGTLIVQF 1144
            +RLP G+S + +     TL  VL  L           S+EL+LRCP P PGR    +EL + T+ + GL PRG L+VQF
Sbjct:  156 MRLPDGTSTTHSFGTAATLREVLTWLQSTEPTAGKLRSKELQLRCPFPPPGRAIAGDELDSSTVESVGLFPRGRLMVQF 234
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6676.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH38_9PHAE4.390e-541.77UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6676contigP-wetherbeei_contig6676:3..1149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1148
Hectar predicted targeting categoryother localisation
Exons1
Cds size795
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186929.143012-CDS-P-wetherbeei_contig6676:2..7971683186929.143012-CDS-P-wetherbeei_contig6676:2..797Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6676 3..797 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186929.1516626-UTR-P-wetherbeei_contig6676:797..11491683186929.1516626-UTR-P-wetherbeei_contig6676:797..1149Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6676 798..1149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6676.1.1prot_P-wetherbeei_contig6676.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6676 3..797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6676.1.1

>prot_P-wetherbeei_contig6676.1.1 ID=prot_P-wetherbeei_contig6676.1.1|Name=mRNA_P-wetherbeei_contig6676.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=265bp
MEALLEAGFSQAEAESAMQSTSSVELAAELILARRAAAQRPGDGTLRLSV
PSAAATTSAAAPLPSPSAAAPPATPSKHSEEVAARQVLLEKAEAARRRTE
AVFRAEAKARKTRELAIFREQHEESKAKKSLKAAAAACTSTGDATPTGWS
TAPKPPSTPASTPTAAPPLTAAAAAATAAAAAPRVQLHVRLPMGSSLSCA
MSPDDTLASVLEALDVASVLGSSRELELRCPVPLPGRVYCREELAAVTLA
AAGLVPRGTLIVQFV
back to top

mRNA from alignment at P-wetherbeei_contig6676:3..1149-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6676.1.1 ID=mRNA_P-wetherbeei_contig6676.1.1|Name=mRNA_P-wetherbeei_contig6676.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1147bp|location=Sequence derived from alignment at P-wetherbeei_contig6676:3..1149- (Phaeothamnion wetherbeei SAG_119_79)
TTTGTCTCCACATTGCTTCCGTGCATTCCGGACTATTCGGTCGCTGGGGC
AAAGTAAAACGAGGGGAGCGAGAAGTAGCTGTCAACGCCACACACACGCA
TTCAAACCAGCCAGAGGAAACCCAAGCCATCATCTCGTGCCGTGATCGCT
CGATTTTACTTTTGTCGAAGGTCTCAAGAGTGCGGCCTGACCCGATGCGA
GATCGAGGCGAAAGGAGCGTAGCTTGACCGCGAGAGCAAGAACGGAGATT
AAGCTTTCCTTCTCTCTTGATCCGGCGACAGGAAGGGTGGCGAAAGGATC
GCGGCTTGATTCCAAACAGGAAAGAGTCTCCTTCCACCCCTTTTCGCTCC
TGATGGAGGCGCTACTGGAAGCCGGCTTCTCGCAAGCGGAGGCCGAAAGT
GCGATGCAATCAACTTCTTCGGTCGAATTGGCAGCGGAGCTTATCTTGGC
GCGGCGGGCCGCGGCGCAACGACCGGGCGACGGCACTCTCCGGCTTTCCG
TTCCGTCGGCGGCGGCTACAACCTCCGCCGCCGCGCCACTTCCGTCCCCT
TCCGCTGCAGCGCCGCCGGCGACCCCTTCGAAGCACTCGGAGGAAGTGGC
AGCGCGGCAGGTCCTGCTCGAGAAGGCCGAGGCAGCCCGCCGCCGCACCG
AGGCTGTCTTCCGGGCCGAGGCGAAGGCGCGAAAGACGCGGGAGCTCGCC
ATCTTTCGCGAGCAGCACGAGGAAAGCAAAGCAAAGAAAAGCCTCAAAGC
CGCCGCCGCTGCCTGCACCAGCACTGGCGACGCCACCCCTACTGGATGGT
CGACGGCACCAAAGCCGCCATCGACGCCGGCGTCGACGCCCACGGCGGCA
CCGCCGCTGACAGCGGCGGCGGCCGCGGCAACGGCAGCAGCGGCGGCCCC
CCGTGTCCAGCTTCACGTTCGGCTCCCTATGGGCAGCTCGCTCTCTTGCG
CCATGTCGCCAGATGACACGTTAGCGTCGGTCCTGGAGGCGCTGGACGTG
GCGTCGGTGCTCGGCAGCTCCCGGGAGCTGGAGCTGCGGTGCCCCGTGCC
GCTGCCGGGACGCGTCTACTGCAGGGAGGAGCTGGCGGCCGTCACACTAG
CGGCGGCCGGCCTCGTGCCGCGCGGGACGCTTATCGTACAGTTTGTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6676:3..1149-

>mRNA_P-wetherbeei_contig6676.1.1 ID=mRNA_P-wetherbeei_contig6676.1.1|Name=mRNA_P-wetherbeei_contig6676.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=795bp|location=Sequence derived from alignment at P-wetherbeei_contig6676:3..1149- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCGCTACTGGAAGCCGGCTTCTCGCAAGCGGAGGCCGAAAGTGC
GATGCAATCAACTTCTTCGGTCGAATTGGCAGCGGAGCTTATCTTGGCGC
GGCGGGCCGCGGCGCAACGACCGGGCGACGGCACTCTCCGGCTTTCCGTT
CCGTCGGCGGCGGCTACAACCTCCGCCGCCGCGCCACTTCCGTCCCCTTC
CGCTGCAGCGCCGCCGGCGACCCCTTCGAAGCACTCGGAGGAAGTGGCAG
CGCGGCAGGTCCTGCTCGAGAAGGCCGAGGCAGCCCGCCGCCGCACCGAG
GCTGTCTTCCGGGCCGAGGCGAAGGCGCGAAAGACGCGGGAGCTCGCCAT
CTTTCGCGAGCAGCACGAGGAAAGCAAAGCAAAGAAAAGCCTCAAAGCCG
CCGCCGCTGCCTGCACCAGCACTGGCGACGCCACCCCTACTGGATGGTCG
ACGGCACCAAAGCCGCCATCGACGCCGGCGTCGACGCCCACGGCGGCACC
GCCGCTGACAGCGGCGGCGGCCGCGGCAACGGCAGCAGCGGCGGCCCCCC
GTGTCCAGCTTCACGTTCGGCTCCCTATGGGCAGCTCGCTCTCTTGCGCC
ATGTCGCCAGATGACACGTTAGCGTCGGTCCTGGAGGCGCTGGACGTGGC
GTCGGTGCTCGGCAGCTCCCGGGAGCTGGAGCTGCGGTGCCCCGTGCCGC
TGCCGGGACGCGTCTACTGCAGGGAGGAGCTGGCGGCCGTCACACTAGCG
GCGGCCGGCCTCGTGCCGCGCGGGACGCTTATCGTACAGTTTGTG
back to top