mRNA_P-wetherbeei_contig12759.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12759.1.1
Unique NamemRNA_P-wetherbeei_contig12759.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12759.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12759contigP-wetherbeei_contig12759:251..1935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1677
Hectar predicted targeting categoryother localisation
Exons2
Cds size1674
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185960.1527755-CDS-P-wetherbeei_contig12759:250..6501683185960.1527755-CDS-P-wetherbeei_contig12759:250..650Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12759 251..650 +
1683185960.1618931-CDS-P-wetherbeei_contig12759:659..19331683185960.1618931-CDS-P-wetherbeei_contig12759:659..1933Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12759 660..1933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12759.1.1prot_P-wetherbeei_contig12759.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12759 251..1933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12759.1.1

>prot_P-wetherbeei_contig12759.1.1 ID=prot_P-wetherbeei_contig12759.1.1|Name=mRNA_P-wetherbeei_contig12759.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=558bp
RTSPGRSARGDGVASIGRRRTPATPEAAGNNWRRASGGGGVSGVGGIAGG
AGEHGSVGTVERGSVGAGEHGSVGSIGGFSYRGASISPSRRSSIAGDNTD
AEDDAFPSREEVVCRTSWRIVAERHGDQHTPGGRGEVRSVQKLRAMFEAH
KSPAAAATALAAAVAAEAAVIAMAGVPSPTGKHGGSAGAGNHRAKSMPAI
KAYSTDDDGDDDDASAGGGRQFSGPGLTPALAAAFQRAASDKVRLSVSRA
EPLSQTASEPAAGGDSGGGGGASGGGAGHSRTAGSSWVGRGANVLRAGGA
SHGAVSPVSNAGSLPPSPAGPPPLRRTSLSPEPELSARALRALEGVEDDS
DVEEEEENRGRRPRNGNGGGGGSSGRGAAGGGGCSNRVIGGSSGKATFGG
TAPAVLASPPLDARRKSGGEALRNSIGSRAGTSGTSGTSARRGKLAFGSS
DGGNGSGSSRGGAGGRGAGSGTGIGGSAGGSGGSGSVRRPRARSMSPGLL
GVDGAPTAASPWGPSLSPKCVPRPAAEENSSATPLSWGSTTGGGGGGGGW
LDRPPSSS
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mRNA from alignment at P-wetherbeei_contig12759:251..1935+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12759.1.1 ID=mRNA_P-wetherbeei_contig12759.1.1|Name=mRNA_P-wetherbeei_contig12759.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1685bp|location=Sequence derived from alignment at P-wetherbeei_contig12759:251..1935+ (Phaeothamnion wetherbeei SAG_119_79)
CGAACGTCGCCAGGGAGAAGCGCCCGCGGCGATGGCGTGGCATCCATCGG
GCGCCGCAGGACGCCGGCTACGCCAGAGGCCGCAGGCAACAACTGGCGCC
GCGCCAGCGGCGGCGGAGGGGTGAGTGGCGTCGGTGGCATCGCAGGCGGC
GCCGGAGAGCACGGCAGTGTCGGCACCGTGGAGCGGGGCAGCGTCGGCGC
CGGCGAGCATGGCAGTGTCGGCAGCATCGGTGGGTTCAGCTACCGCGGGG
CGTCCATCTCGCCGTCGCGGCGCTCGTCGATCGCCGGCGATAACACCGAT
GCGGAGGATGACGCCTTTCCCAGTCGCGAGGAAGTGGTCTGCCGCACCAG
CTGGCGCATCGTGGCAGAACGACACGGCGACCAGCACACGCCAGGGGGAA
GCGTAGGAGGGGGAGAGGTGCGGAGCGTGCAGAAGCTGCGGGCGATGTTC
GAGGCGCACAAGTCGCCGGCGGCGGCGGCGACGGCGCTGGCGGCGGCGGT
GGCGGCGGAGGCGGCAGTCATCGCCATGGCGGGCGTGCCGTCGCCCACTG
GCAAGCATGGCGGCAGCGCCGGCGCCGGCAACCACCGCGCCAAGAGCATG
CCGGCGATAAAGGCGTACTCGACGGACGACGACGGCGACGACGACGACGC
CAGCGCTGGCGGCGGCCGCCAGTTCAGCGGGCCGGGCCTGACTCCGGCAC
TAGCCGCGGCGTTCCAGCGCGCCGCGTCAGATAAGGTGCGGCTGTCGGTT
TCCCGGGCGGAGCCACTGTCGCAAACCGCATCGGAGCCGGCGGCCGGCGG
CGATAGCGGTGGCGGCGGCGGCGCTAGCGGTGGCGGCGCTGGCCATTCAC
GCACTGCCGGTTCGTCGTGGGTCGGCCGCGGCGCCAACGTTCTGCGGGCG
GGCGGCGCTTCGCACGGCGCCGTGTCGCCCGTCTCAAATGCGGGGTCGCT
GCCGCCGTCGCCGGCAGGGCCGCCACCGCTGCGGCGGACGAGCCTGTCAC
CGGAGCCGGAGCTGTCGGCGCGGGCACTGAGGGCCTTAGAAGGGGTCGAA
GACGACAGCGACGTGGAGGAAGAGGAGGAAAACCGCGGGCGCCGCCCTAG
AAATGGTAACGGTGGCGGCGGCGGTAGTAGTGGTAGAGGTGCTGCTGGTG
GCGGCGGTTGCAGCAACAGGGTTATTGGTGGCAGTAGTGGCAAAGCCACG
TTCGGGGGCACGGCGCCGGCGGTTTTGGCGTCTCCGCCCCTTGACGCGCG
GCGGAAGAGCGGAGGAGAAGCTCTCCGCAACAGTATCGGTTCTCGTGCCG
GCACCAGTGGCACAAGCGGAACCAGCGCCAGAAGAGGGAAACTTGCCTTC
GGCTCCAGTGACGGCGGCAACGGCAGTGGCAGCAGTAGAGGAGGCGCCGG
CGGCCGCGGAGCGGGCAGTGGCACCGGCATTGGCGGCAGTGCTGGCGGCA
GCGGCGGCAGCGGCTCCGTGCGCCGGCCGCGGGCACGCTCCATGTCGCCG
GGCCTGCTCGGCGTCGACGGCGCGCCCACGGCGGCGAGCCCATGGGGTCC
GTCGCTTTCGCCGAAGTGCGTTCCGCGACCGGCGGCGGAGGAGAACAGCT
CTGCAACGCCGCTCTCATGGGGATCGACGACGGGCGGTGGCGGCGGCGGC
GGCGGGTGGCTCGACCGGCCGCCGTCATCCTCGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12759:251..1935+

>mRNA_P-wetherbeei_contig12759.1.1 ID=mRNA_P-wetherbeei_contig12759.1.1|Name=mRNA_P-wetherbeei_contig12759.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1674bp|location=Sequence derived from alignment at P-wetherbeei_contig12759:251..1935+ (Phaeothamnion wetherbeei SAG_119_79)
CGAACGTCGCCAGGGAGAAGCGCCCGCGGCGATGGCGTGGCATCCATCGG
GCGCCGCAGGACGCCGGCTACGCCAGAGGCCGCAGGCAACAACTGGCGCC
GCGCCAGCGGCGGCGGAGGGGTGAGTGGCGTCGGTGGCATCGCAGGCGGC
GCCGGAGAGCACGGCAGTGTCGGCACCGTGGAGCGGGGCAGCGTCGGCGC
CGGCGAGCATGGCAGTGTCGGCAGCATCGGTGGGTTCAGCTACCGCGGGG
CGTCCATCTCGCCGTCGCGGCGCTCGTCGATCGCCGGCGATAACACCGAT
GCGGAGGATGACGCCTTTCCCAGTCGCGAGGAAGTGGTCTGCCGCACCAG
CTGGCGCATCGTGGCAGAACGACACGGCGACCAGCACACGCCAGGGGGAA
GGGGAGAGGTGCGGAGCGTGCAGAAGCTGCGGGCGATGTTCGAGGCGCAC
AAGTCGCCGGCGGCGGCGGCGACGGCGCTGGCGGCGGCGGTGGCGGCGGA
GGCGGCAGTCATCGCCATGGCGGGCGTGCCGTCGCCCACTGGCAAGCATG
GCGGCAGCGCCGGCGCCGGCAACCACCGCGCCAAGAGCATGCCGGCGATA
AAGGCGTACTCGACGGACGACGACGGCGACGACGACGACGCCAGCGCTGG
CGGCGGCCGCCAGTTCAGCGGGCCGGGCCTGACTCCGGCACTAGCCGCGG
CGTTCCAGCGCGCCGCGTCAGATAAGGTGCGGCTGTCGGTTTCCCGGGCG
GAGCCACTGTCGCAAACCGCATCGGAGCCGGCGGCCGGCGGCGATAGCGG
TGGCGGCGGCGGCGCTAGCGGTGGCGGCGCTGGCCATTCACGCACTGCCG
GTTCGTCGTGGGTCGGCCGCGGCGCCAACGTTCTGCGGGCGGGCGGCGCT
TCGCACGGCGCCGTGTCGCCCGTCTCAAATGCGGGGTCGCTGCCGCCGTC
GCCGGCAGGGCCGCCACCGCTGCGGCGGACGAGCCTGTCACCGGAGCCGG
AGCTGTCGGCGCGGGCACTGAGGGCCTTAGAAGGGGTCGAAGACGACAGC
GACGTGGAGGAAGAGGAGGAAAACCGCGGGCGCCGCCCTAGAAATGGTAA
CGGTGGCGGCGGCGGTAGTAGTGGTAGAGGTGCTGCTGGTGGCGGCGGTT
GCAGCAACAGGGTTATTGGTGGCAGTAGTGGCAAAGCCACGTTCGGGGGC
ACGGCGCCGGCGGTTTTGGCGTCTCCGCCCCTTGACGCGCGGCGGAAGAG
CGGAGGAGAAGCTCTCCGCAACAGTATCGGTTCTCGTGCCGGCACCAGTG
GCACAAGCGGAACCAGCGCCAGAAGAGGGAAACTTGCCTTCGGCTCCAGT
GACGGCGGCAACGGCAGTGGCAGCAGTAGAGGAGGCGCCGGCGGCCGCGG
AGCGGGCAGTGGCACCGGCATTGGCGGCAGTGCTGGCGGCAGCGGCGGCA
GCGGCTCCGTGCGCCGGCCGCGGGCACGCTCCATGTCGCCGGGCCTGCTC
GGCGTCGACGGCGCGCCCACGGCGGCGAGCCCATGGGGTCCGTCGCTTTC
GCCGAAGTGCGTTCCGCGACCGGCGGCGGAGGAGAACAGCTCTGCAACGC
CGCTCTCATGGGGATCGACGACGGGCGGTGGCGGCGGCGGCGGCGGGTGG
CTCGACCGGCCGCCGTCATCCTCG
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