mRNA_P-wetherbeei_contig667.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig667.6.1
Unique NamemRNA_P-wetherbeei_contig667.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig667.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig667contigP-wetherbeei_contig667:6935..8374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog40149.OMERI01G04860.1
PFAMsAnk_2,Ank_3,Ank_4,TPR_2,TPR_8
Model size1344
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000779
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota,389AM@33090|Viridiplantae,3GYBP@35493|Streptophyta,3KYVM@4447|Liliopsida,3I4ER@38820|Poales
DescriptionAnkyrin repeats (3 copies)
Cds size1284
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186928.8244429-CDS-P-wetherbeei_contig667:6934..80081683186928.8244429-CDS-P-wetherbeei_contig667:6934..8008Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig667 6935..8008 -
1683186928.8366172-CDS-P-wetherbeei_contig667:8104..83141683186928.8366172-CDS-P-wetherbeei_contig667:8104..8314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig667 8105..8314 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186928.8554556-UTR-P-wetherbeei_contig667:8314..83741683186928.8554556-UTR-P-wetherbeei_contig667:8314..8374Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig667 8315..8374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig667.6.1prot_P-wetherbeei_contig667.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig667 6935..8314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig667.6.1

>prot_P-wetherbeei_contig667.6.1 ID=prot_P-wetherbeei_contig667.6.1|Name=mRNA_P-wetherbeei_contig667.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=428bp
MTSFDAISSVHNDDVKALSSFVDSGGDVNSRDEDGCTLLHHAAFGGSVET
TKFLLDRNADVFAKNVSGNQATHYAANGGFSGVLRLLLERGGRADVANHH
DTRPLKAAIFKGHTACVRILMEHGAGAATESSSASPLPPLRFHLSVGHET
QAEITRLLAEAVMTGTSAAGVVGAAAGATASSLLVPAAGGEGADDAKHEG
PSQAPEGDTATRVDGTAAASGVGRRSRTRGGRPSQPLPPALAATAAGTGG
AAGMPAAAAVTASSGAERTTAGSQHAPPEAEVAMEVGGAAAAVPAPCSLA
SALQPRAASGAMDTETVVDEAPASPFEAADRAESEADTNSANRYIDDNAR
VGLLLNVPPAAAERAVPEPSLPHPIAQSSMPSPAATVVPPPPPTPVAVPP
GALAAVPGDDGRADGNVEVEREISSLLA
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mRNA from alignment at P-wetherbeei_contig667:6935..8374-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig667.6.1 ID=mRNA_P-wetherbeei_contig667.6.1|Name=mRNA_P-wetherbeei_contig667.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1440bp|location=Sequence derived from alignment at P-wetherbeei_contig667:6935..8374- (Phaeothamnion wetherbeei SAG_119_79)
TAGGCGTTGCAGCCCGATAAGGCCTTTTTCTCTCTCATCTTGTTCGCATC
CTTGTCTCACATGACATCCTTCGACGCGATTTCGAGCGTCCACAACGACG
ACGTCAAGGCCCTTTCTTCCTTTGTGGACTCCGGAGGCGATGTCAACTCA
AGAGATGAGGATGGATGTACCCTTCTCCACCACGCTGCGTTCGGGGGCTC
GGTTGAAACAACGAAGTTTCTCCTTGATCGTAATGCCGACGTTTTTGCGA
AGAACGTCTCCGGGAATCAGGTGCGAGTCAAGCTTTCGTTCGATTAGAAG
CTTGTGGAAATCTTGGCTTGAAAGAAAGTTCCCTTCCAAATACGACGACT
CGTTCGATGGCCGCAGGCGACGCACTACGCGGCGAACGGCGGATTCTCTG
GCGTCCTCCGTCTGCTCCTGGAGCGCGGCGGGCGAGCCGATGTGGCGAAT
CATCACGATACGCGCCCCCTCAAGGCGGCTATCTTCAAGGGCCATACCGC
CTGCGTCCGCATCCTCATGGAACACGGCGCTGGCGCGGCCACGGAGTCGT
CTTCGGCGTCGCCGTTGCCACCCCTGCGATTCCATCTGTCTGTCGGCCAT
GAGACGCAGGCTGAAATTACCAGGCTTCTTGCTGAAGCCGTTATGACAGG
AACATCGGCGGCGGGGGTGGTGGGGGCAGCGGCGGGGGCGACGGCATCAT
CGTTGCTTGTGCCAGCCGCTGGCGGAGAAGGTGCCGACGATGCGAAACAT
GAAGGGCCGTCGCAGGCGCCCGAGGGCGACACTGCGACGAGAGTTGATGG
CACCGCTGCAGCCAGCGGCGTCGGCAGGCGGAGTCGCACTCGAGGCGGGC
GGCCCTCCCAGCCACTGCCACCGGCATTGGCAGCGACCGCCGCTGGTACA
GGCGGTGCGGCGGGCATGCCAGCGGCGGCAGCTGTGACTGCCTCCAGCGG
CGCCGAAAGAACTACGGCAGGATCGCAGCACGCGCCGCCGGAAGCGGAAG
TGGCCATGGAGGTGGGAGGAGCGGCAGCAGCAGTCCCAGCGCCGTGCTCA
CTGGCATCGGCCTTGCAGCCGCGAGCAGCATCTGGGGCAATGGATACAGA
AACTGTGGTGGACGAGGCTCCAGCATCGCCATTCGAAGCCGCCGACAGGG
CCGAAAGCGAAGCGGATACGAACTCTGCGAACCGCTACATCGACGACAAC
GCTCGTGTCGGCTTATTGCTGAACGTACCTCCAGCCGCAGCGGAACGCGC
TGTGCCAGAGCCATCGCTGCCTCATCCGATTGCTCAGTCGTCGATGCCGT
CGCCGGCCGCTACCGTTGTGCCACCACCGCCGCCGACCCCGGTAGCTGTC
CCGCCAGGCGCGCTTGCTGCGGTTCCTGGCGACGACGGGCGTGCCGACGG
CAACGTCGAAGTGGAGCGGGAGATCTCCAGCCTCTTAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig667:6935..8374-

>mRNA_P-wetherbeei_contig667.6.1 ID=mRNA_P-wetherbeei_contig667.6.1|Name=mRNA_P-wetherbeei_contig667.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1284bp|location=Sequence derived from alignment at P-wetherbeei_contig667:6935..8374- (Phaeothamnion wetherbeei SAG_119_79)
ATGACATCCTTCGACGCGATTTCGAGCGTCCACAACGACGACGTCAAGGC
CCTTTCTTCCTTTGTGGACTCCGGAGGCGATGTCAACTCAAGAGATGAGG
ATGGATGTACCCTTCTCCACCACGCTGCGTTCGGGGGCTCGGTTGAAACA
ACGAAGTTTCTCCTTGATCGTAATGCCGACGTTTTTGCGAAGAACGTCTC
CGGGAATCAGGCGACGCACTACGCGGCGAACGGCGGATTCTCTGGCGTCC
TCCGTCTGCTCCTGGAGCGCGGCGGGCGAGCCGATGTGGCGAATCATCAC
GATACGCGCCCCCTCAAGGCGGCTATCTTCAAGGGCCATACCGCCTGCGT
CCGCATCCTCATGGAACACGGCGCTGGCGCGGCCACGGAGTCGTCTTCGG
CGTCGCCGTTGCCACCCCTGCGATTCCATCTGTCTGTCGGCCATGAGACG
CAGGCTGAAATTACCAGGCTTCTTGCTGAAGCCGTTATGACAGGAACATC
GGCGGCGGGGGTGGTGGGGGCAGCGGCGGGGGCGACGGCATCATCGTTGC
TTGTGCCAGCCGCTGGCGGAGAAGGTGCCGACGATGCGAAACATGAAGGG
CCGTCGCAGGCGCCCGAGGGCGACACTGCGACGAGAGTTGATGGCACCGC
TGCAGCCAGCGGCGTCGGCAGGCGGAGTCGCACTCGAGGCGGGCGGCCCT
CCCAGCCACTGCCACCGGCATTGGCAGCGACCGCCGCTGGTACAGGCGGT
GCGGCGGGCATGCCAGCGGCGGCAGCTGTGACTGCCTCCAGCGGCGCCGA
AAGAACTACGGCAGGATCGCAGCACGCGCCGCCGGAAGCGGAAGTGGCCA
TGGAGGTGGGAGGAGCGGCAGCAGCAGTCCCAGCGCCGTGCTCACTGGCA
TCGGCCTTGCAGCCGCGAGCAGCATCTGGGGCAATGGATACAGAAACTGT
GGTGGACGAGGCTCCAGCATCGCCATTCGAAGCCGCCGACAGGGCCGAAA
GCGAAGCGGATACGAACTCTGCGAACCGCTACATCGACGACAACGCTCGT
GTCGGCTTATTGCTGAACGTACCTCCAGCCGCAGCGGAACGCGCTGTGCC
AGAGCCATCGCTGCCTCATCCGATTGCTCAGTCGTCGATGCCGTCGCCGG
CCGCTACCGTTGTGCCACCACCGCCGCCGACCCCGGTAGCTGTCCCGCCA
GGCGCGCTTGCTGCGGTTCCTGGCGACGACGGGCGTGCCGACGGCAACGT
CGAAGTGGAGCGGGAGATCTCCAGCCTCTTAGCC
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