mRNA_P-wetherbeei_contig666.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig666.2.1
Unique NamemRNA_P-wetherbeei_contig666.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig666.2.1 vs. uniprot
Match: UPI001886F651 (uncharacterized protein LOC119179842 n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI001886F651)

HSP 1 Score: 92.4 bits (228), Expect = 2.710e-19
Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1 
Query:    1 GQLTVQMARPVAIDAVTLQHVSRLIALDSGGGGGGVAKSAPRDFEVYGRQGADDATPELLVTGRFDAAGPDVQTFAVPAEPGSGGSRVGTGSGRRRKFPMVTLKILSNHGQQEYTCLYRLRIHG 372
            G L V++A+P+ + A +++H+SRL+A      G G   SAPR+FE++G     D+   LL T  +DA G  +Q F V                ++  +  V +KILSNHG  EYTCLYRLR+HG
Sbjct:  684 GHLVVRLAQPIRVTAFSVEHISRLLA------GSGHTSSAPREFEMWGLDSETDSAGRLLGTYAYDAEGDTLQYFIVQ-------------DAKQAVYEYVEMKILSNHGNLEYTCLYRLRVHG 788
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BLAST of mRNA_P-wetherbeei_contig666.2.1 vs. uniprot
Match: A0A835ZD47_9STRA (UNC-like C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD47_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.700e-17
Identity = 48/124 (38.71%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:    1 GQLTVQMARPVAIDAVTLQHVSRLIALDSGGGGGGVAKSAPRDFEVYGRQGADDATPELLVTGRFDAAGPDVQTFAVPAEPGSGGSRVGTGSGRRRKFPMVTLKILSNHGQQEYTCLYRLRIHG 372
            GQLTV++A  + +DA+TL+H S  I+ D          SAP+ F + G    + A P  L+ G +D +    Q F VP  P S           +  F MVTLK+L N+G+ EYTC+YRL++HG
Sbjct:  119 GQLTVKLATAIRVDAITLEHASAQISPDR--------SSAPKTFHLLGLVD-ESAQPVPLLQGEYDLSASPQQLFRVPVGPYS-----------QTAFSMVTLKVLDNYGKPEYTCIYRLQLHG 222
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BLAST of mRNA_P-wetherbeei_contig666.2.1 vs. uniprot
Match: L7LUZ9_RHIPC (Putative spindle pole body protein n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7LUZ9_RHIPC)

HSP 1 Score: 86.7 bits (213), Expect = 2.850e-17
Identity = 49/125 (39.20%), Postives = 68/125 (54.40%), Query Frame = 1 
Query:    1 GQLTVQMARPVAIDAVTLQHVSRLIALDSGGGGGGVAKSAPRDFEVYGRQGADDATPELLVTGRFDAAGPDVQTFAVP-AEPGSGGSRVGTGSGRRRKFPMVTLKILSNHGQQEYTCLYRLRIHG 372
            G L V++A+P+ + A +++H+SR +       G G   SAPR+FE++G     D+   LL T  +DA G  +Q F V   EP                +  V +KILSNHG  EYTCLYRLR+HG
Sbjct:  692 GHLVVKLAQPIKVTAFSVEHISRSLV------GSGHTSSAPREFEMWGLDSETDSPGRLLGTYTYDAEGDTLQYFIVQDTEPAV--------------YEYVEMKILSNHGNLEYTCLYRLRVHG 796
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BLAST of mRNA_P-wetherbeei_contig666.2.1 vs. uniprot
Match: A0A6H5J860_9PHAE (SUN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J860_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 9.250e-17
Identity = 46/124 (37.10%), Postives = 70/124 (56.45%), Query Frame = 1 
Query:    1 GQLTVQMARPVAIDAVTLQHVSRLIALDSGGGGGGVAKSAPRDFEVYGRQGADDATPELLVTGRFDAAGPDVQTFAVPAEPGSGGSRVGTGSGRRRKFPMVTLKILSNHGQQEYTCLYRLRIHG 372
            G +T+Q+   + +D V+++HVSR++  +SG        SAP++ EV+G +   D  P  L +  +D  G  +QTF  P EP      +G       +F ++  KILSN G  +YTCLYRLR+HG
Sbjct:  430 GLVTIQLPEKITVDGVSVEHVSRMVTTESG--------SAPKEIEVWGMRNKKDNNPAKLGSAVYDVDGRPIQTF--PIEP------LGV------QFKLIQFKILSNWGNPDYTCLYRLRVHG 531
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BLAST of mRNA_P-wetherbeei_contig666.2.1 vs. uniprot
Match: UPI0010BDDC7E (SUN domain-containing protein 1 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0010BDDC7E)

HSP 1 Score: 84.0 bits (206), Expect = 1.110e-16
Identity = 47/124 (37.90%), Postives = 63/124 (50.81%), Query Frame = 1 
Query:    1 GQLTVQMARPVAIDAVTLQHVSRLIALDSGGGGGGVAKSAPRDFEVYGRQGADDATPELLVTGRFDAAGPDVQTFAVPAEPGSGGSRVGTGSGRRRKFPMVTLKILSNHGQQEYTCLYRLRIHG 372
            G L +Q++R + ++A TL+H+   +AL+      G   SAP DFEVYG   A+D    LL    +   G  +Q F V  +               R F  V LKIL+NHG   YTCLYR R+HG
Sbjct:  226 GYLVLQLSRRIHVEAFTLEHIPASLALN------GNIDSAPNDFEVYGMDSAEDKAGFLLGRYNYSITGEPLQNFKVQHQ-------------TERTFEFVELKILTNHGNIHYTCLYRFRVHG 330
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BLAST of mRNA_P-wetherbeei_contig666.2.1 vs. uniprot
Match: D7FIC3_ECTSI (SUN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC3_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.480e-16
Identity = 43/124 (34.68%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:    1 GQLTVQMARPVAIDAVTLQHVSRLIALDSGGGGGGVAKSAPRDFEVYGRQGADDATPELLVTGRFDAAGPDVQTFAVPAEPGSGGSRVGTGSGRRRKFPMVTLKILSNHGQQEYTCLYRLRIHG 372
            G +T+Q+ + + +D V+++HVSR++  +SG        SAP++ EV+G +   D  P  L +  +D  G  +QTF +   PG              +  ++  KILSN G  +YTCLYRLR+HG
Sbjct:  310 GLVTIQLPKKITVDGVSVEHVSRMVTTESG--------SAPKELEVWGMKNKKDKKPAKLGSAVYDVDGRPIQTFRIEP-PGE-------------QIELIQFKILSNWGNPDYTCLYRLRVHG 411
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BLAST of mRNA_P-wetherbeei_contig666.2.1 vs. uniprot
Match: UPI001893E75E (uncharacterized protein LOC119399330 n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI001893E75E)

HSP 1 Score: 83.6 bits (205), Expect = 3.410e-16
Identity = 47/125 (37.60%), Postives = 68/125 (54.40%), Query Frame = 1 
Query:    1 GQLTVQMARPVAIDAVTLQHVSRLIALDSGGGGGGVAKSAPRDFEVYGRQGADDATPELLVTGRFDAAGPDVQTFAVP-AEPGSGGSRVGTGSGRRRKFPMVTLKILSNHGQQEYTCLYRLRIHG 372
            G L V++A+P+ + A +++H+SR +         G   SAPR+F+++G     D+   LL +  +DA G  +Q F V   EP               K+  V +KILSNHG  EYTCLYRLR+HG
Sbjct:  688 GHLVVRLAQPIKVTAFSIEHISRSLVSS------GHTSSAPREFQMWGLDSETDSPGRLLGSYTYDADGDTLQYFIVQDPEPD--------------KYEYVEMKILSNHGNLEYTCLYRLRVHG 792
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BLAST of mRNA_P-wetherbeei_contig666.2.1 vs. uniprot
Match: A0A0D2WKD5_CAPO3 (SUN domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WKD5_CAPO3)

HSP 1 Score: 83.6 bits (205), Expect = 3.480e-16
Identity = 47/124 (37.90%), Postives = 69/124 (55.65%), Query Frame = 1 
Query:    1 GQLTVQMARPVAIDAVTLQHVSRLIALDSGGGGGGVAKSAPRDFEVYGRQGADDATPELLVTGRFDAAGPDVQTFAVPAEPGSGGSRVGTGSGRRRKFPMVTLKILSNHGQQEYTCLYRLRIHG 372
            GQLTV++AR ++I   +++HV++ I+L++        KSAPR F V     A D    LL    +D  G  +Q FAV ++P              R F  V L+I SN+G+++YTCLYR R+HG
Sbjct:  914 GQLTVRLARSISITGFSVEHVAKSISLNT-------MKSAPRAFRVVALNAACDTEGTLLGQYSYDIDGTPLQQFAVQSKPS-------------RSFEYVRLEIASNYGEEDYTCLYRFRVHG 1017
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BLAST of mRNA_P-wetherbeei_contig666.2.1 vs. uniprot
Match: A0A154P7G3_DUFNO (SUN domain-containing protein 1 (Fragment) n=2 Tax=Dufourea novaeangliae TaxID=178035 RepID=A0A154P7G3_DUFNO)

HSP 1 Score: 80.9 bits (198), Expect = 5.080e-16
Identity = 40/125 (32.00%), Postives = 63/125 (50.40%), Query Frame = 1 
Query:    1 GQLTVQMARPVAIDAVTLQHVSRLIALDSGGGGGGVAKSAPRDFEVYGRQGADDATPELLVTGRFDAAGPDVQTFAVPAEPGSGGSRVGTGSGRRRKFPMVTLKILSNHGQQEYTCLYRLRIHGT 375
            G + +Q+  PV +  V+L+H+   I+        G   +AP+DF ++G    DD  P       +D  GP +Q F +  EP             ++ + +V LK+ SN G  EYTC+YR+R+HGT
Sbjct:  139 GSVVIQLLGPVHVSGVSLEHIPETISPT------GETSTAPKDFSLWGLDCVDDTHPFFFGDFMYDNTGPPIQYFEIQTEP-------------KKPYKIVELKVHSNSGNNEYTCIYRIRVHGT 244
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BLAST of mRNA_P-wetherbeei_contig666.2.1 vs. uniprot
Match: UPI00094F0B41 (SUN domain-containing protein 2 n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=UPI00094F0B41)

HSP 1 Score: 82.4 bits (202), Expect = 8.700e-16
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 1 
Query:    1 GQLTVQMARPVAIDAVTLQHVSRLIALDSGGGGGGVAKSAPRDFEVYGRQGADDATPELLVTGRFDAAGPDVQTFAVPAEPGSGGSRVGTGSGRRRKFPMVTLKILSNHGQQEYTCLYRLRIHG 372
            G + ++++  V IDA +++H+SRL+  +      G   SAP+DFEVYG +  +D  P LL + R++  G  +Q F V  +     S+V         F M+ ++ILSNHG   YTCLYR R+HG
Sbjct:  726 GFVVLKLSGNVKIDAFSMEHISRLLLPE------GKIDSAPKDFEVYGLKIENDREPVLLGSYRYEYDGDTLQFFLVEKD-----SQV---------FDMIEIRILSNHGNPNYTCLYRFRVHG 829
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig666.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001886F6512.710e-1939.52uncharacterized protein LOC119179842 n=1 Tax=Rhipi... [more]
A0A835ZD47_9STRA1.700e-1738.71UNC-like C-terminal-domain-containing protein n=1 ... [more]
L7LUZ9_RHIPC2.850e-1739.20Putative spindle pole body protein n=1 Tax=Rhipice... [more]
A0A6H5J860_9PHAE9.250e-1737.10SUN domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI0010BDDC7E1.110e-1637.90SUN domain-containing protein 1 n=1 Tax=Galendromu... [more]
D7FIC3_ECTSI2.480e-1634.68SUN domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI001893E75E3.410e-1637.60uncharacterized protein LOC119399330 n=1 Tax=Rhipi... [more]
A0A0D2WKD5_CAPO33.480e-1637.90SUN domain-containing protein n=1 Tax=Capsaspora o... [more]
A0A154P7G3_DUFNO5.080e-1632.00SUN domain-containing protein 1 (Fragment) n=2 Tax... [more]
UPI00094F0B418.700e-1637.90SUN domain-containing protein 2 n=1 Tax=Dendrocton... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig666contigP-wetherbeei_contig666:7725..8105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog144197.XP_008297345.1
Preferred nameSUN1
PFAMsMRP,Sad1_UNC
Model size381
Max annot lvl33208|Metazoa
KEGG koko:K19347
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000280,GO:0000724,GO:0000725,GO:0001669,GO:0002080,GO:0002119,GO:0002164,GO:0003674,GO:0005488,GO:0005515,GO:0005521,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005639,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006810,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007097,GO:0007127,GO:0007129,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007610,GO:0008104,GO:0008150,GO:0008152,GO:0008347,GO:0009791,GO:0009987,GO:0010256,GO:0010970,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016043,GO:0016477,GO:0018991,GO:0019098,GO:0019866,GO:0021537,GO:0021543,GO:0021795,GO:0021799,GO:0021801,GO:0021814,GO:0021815,GO:0021817,GO:0021885,GO:0021987,GO:0022008,GO:0022029,GO:0022030,GO:0022402,GO:0022414,GO:0030141,GO:0030154,GO:0030334,GO:0030473,GO:0030659,GO:0030667,GO:0030705,GO:0030900,GO:0031090,GO:0031224,GO:0031229,GO:0031300,GO:0031301,GO:0031410,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034397,GO:0034398,GO:0034399,GO:0034504,GO:0034613,GO:0034641,GO:0034992,GO:0034993,GO:0040011,GO:0040012,GO:0040025,GO:0042063,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043495,GO:0043578,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044453,GO:0044464,GO:0044821,GO:0045132,GO:0045141,GO:0045143,GO:0045185,GO:0046483,GO:0046907,GO:0048285,GO:0048471,GO:0048513,GO:0048569,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051270,GO:0051276,GO:0051303,GO:0051321,GO:0051457,GO:0051640,GO:0051641,GO:0051642,GO:0051647,GO:0051649,GO:0051651,GO:0051656,GO:0051674,GO:0051716,GO:0060322,GO:0061024,GO:0061842,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070197,GO:0070727,GO:0071704,GO:0071840,GO:0072384,GO:0072595,GO:0090220,GO:0090286,GO:0090292,GO:0090304,GO:0097223,GO:0097240,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0099111,GO:0099503,GO:0106083,GO:0106094,GO:0140013,GO:1901360,GO:1903046,GO:2000145
Exons1
Evalue6.56e-15
EggNOG OGsKOG2687@1|root,KOG2687@2759|Eukaryota,38G26@33154|Opisthokonta,3BJMT@33208|Metazoa,3CYV6@33213|Bilateria,487QD@7711|Chordata,497FP@7742|Vertebrata
Ec32 ortholog descriptionSUN domain
Ec32 orthologEc-11_001360.1
DescriptionSad1 and UNC84 domain containing 1
Cds size363
COG categoryD
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186928.3376842-UTR-P-wetherbeei_contig666:7724..77421683186928.3376842-UTR-P-wetherbeei_contig666:7724..7742Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig666 7725..7742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186928.3503046-CDS-P-wetherbeei_contig666:7742..81051683186928.3503046-CDS-P-wetherbeei_contig666:7742..8105Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig666 7743..8105 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig666.2.1prot_P-wetherbeei_contig666.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig666 7743..8105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig666.2.1

>prot_P-wetherbeei_contig666.2.1 ID=prot_P-wetherbeei_contig666.2.1|Name=mRNA_P-wetherbeei_contig666.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MARPVAIDAVTLQHVSRLIALDSGGGGGGVAKSAPRDFEVYGRQGADDAT
PELLVTGRFDAAGPDVQTFAVPAEPGSGGSRVGTGSGRRRKFPMVTLKIL
SNHGQQEYTCLYRLRIHGTT*
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mRNA from alignment at P-wetherbeei_contig666:7725..8105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig666.2.1 ID=mRNA_P-wetherbeei_contig666.2.1|Name=mRNA_P-wetherbeei_contig666.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig666:7725..8105+ (Phaeothamnion wetherbeei SAG_119_79)
GGACAGCTGACGGTGCAGATGGCGCGGCCAGTGGCGATAGATGCGGTGAC
GCTGCAGCACGTTAGCCGCCTCATCGCCCTCGACAGCGGCGGCGGCGGTG
GCGGCGTCGCTAAATCGGCGCCGCGGGACTTTGAGGTGTACGGGCGGCAG
GGAGCCGACGACGCGACGCCGGAGCTGCTGGTCACCGGGCGCTTTGACGC
TGCAGGGCCCGACGTTCAGACGTTCGCTGTGCCGGCAGAGCCTGGGTCCG
GCGGCAGCCGCGTGGGAACAGGCAGCGGACGGCGCCGGAAGTTTCCGATG
GTGACCCTCAAGATTTTGAGCAACCATGGCCAGCAGGAGTACACGTGTTT
GTACCGGTTGCGGATCCACGGCACGACATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig666:7725..8105+

>mRNA_P-wetherbeei_contig666.2.1 ID=mRNA_P-wetherbeei_contig666.2.1|Name=mRNA_P-wetherbeei_contig666.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig666:7725..8105+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGGCCAGTGGCGATAGATGCGGTGACGCTGCAGCACGTTAGCCG
CCTCATCGCCCTCGACAGCGGCGGCGGCGGTGGCGGCGTCGCTAAATCGG
CGCCGCGGGACTTTGAGGTGTACGGGCGGCAGGGAGCCGACGACGCGACG
CCGGAGCTGCTGGTCACCGGGCGCTTTGACGCTGCAGGGCCCGACGTTCA
GACGTTCGCTGTGCCGGCAGAGCCTGGGTCCGGCGGCAGCCGCGTGGGAA
CAGGCAGCGGACGGCGCCGGAAGTTTCCGATGGTGACCCTCAAGATTTTG
AGCAACCATGGCCAGCAGGAGTACACGTGTTTGTACCGGTTGCGGATCCA
CGGCACGACATGA
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