mRNA_P-wetherbeei_contig6656.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6656.2.1
Unique NamemRNA_P-wetherbeei_contig6656.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6656.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6656contigP-wetherbeei_contig6656:2072..3335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1124
Hectar predicted targeting categoryother localisation
Exons2
Cds size867
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186928.216122-UTR-P-wetherbeei_contig6656:2071..22211683186928.216122-UTR-P-wetherbeei_contig6656:2071..2221Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6656 2072..2221 +
1683186928.2255995-UTR-P-wetherbeei_contig6656:2363..24681683186928.2255995-UTR-P-wetherbeei_contig6656:2363..2468Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6656 2364..2468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186928.2347782-CDS-P-wetherbeei_contig6656:2468..33351683186928.2347782-CDS-P-wetherbeei_contig6656:2468..3335Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6656 2469..3335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6656.2.1prot_P-wetherbeei_contig6656.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6656 2469..3335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6656.2.1

>prot_P-wetherbeei_contig6656.2.1 ID=prot_P-wetherbeei_contig6656.2.1|Name=mRNA_P-wetherbeei_contig6656.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=289bp
MMSNEGAAGDDLAVASPHAAGLTTVRLEENEPAAATAVADAEARGGQLTG
TEIGDLTAELARLSGTGPLNAARRHDVRQQLVALLKERRTAADGEDQGAP
GSGSSNGAGADDSVSRLDQLPPPLVQAVAAALDPPSFARLGVACKDAATM
LSSSRAPVVARCGAFRALFRRFHGDLPAAMPRRLHLLNAMAALVPPSAGD
PGFAAACDVIEARIMNMRPGSSLDAELAAMAAAARRYRLVPPPPPQRQPQ
TVDGAASEGTVAAAAAAASVAAAAAMVAPASIAGTAASA
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mRNA from alignment at P-wetherbeei_contig6656:2072..3335+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6656.2.1 ID=mRNA_P-wetherbeei_contig6656.2.1|Name=mRNA_P-wetherbeei_contig6656.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1264bp|location=Sequence derived from alignment at P-wetherbeei_contig6656:2072..3335+ (Phaeothamnion wetherbeei SAG_119_79)
AAGAACGAGAACGGAGAAGGGAGGCTTTTCCGTTTTCGCGCTTAGAATTT
TTAGGGGACAGAGGGGTAGAGAGATCAAATCAGGAGCCTGGGAAAGTTGC
CGTCACAGAAGTATGCTGCCGTGAGCACGTCGTCGGACCTCCGGAGAAAT
GTGAGAGTTGCTCTTTTGTCTTTCTGTCTCGACGCCTTGTCGGGGACCAG
AAACAGTTTGCAGATAGCGCTTGAGCAAACGGCGTTTTTCATCGTTCGTG
CTATTCTGCTTTCGACGCTGCGTTTGCTCGCCACCTCTCCAGGCGTCTGG
GGTTGCGTCCTTCAACTTTTCGCCAAAGGGACGAAGGACAAAAGAGAAAG
GACTTTCTTTCCCCGTCGATGCAGCTCACGCTTCTTTTCTCTACAAGATG
ATGAGCAACGAAGGTGCGGCAGGCGACGACCTGGCCGTCGCGTCGCCTCA
CGCGGCTGGGCTGACCACGGTGCGGCTCGAGGAAAACGAGCCTGCTGCCG
CCACCGCCGTCGCCGACGCCGAGGCGCGAGGCGGTCAGCTCACCGGGACA
GAGATTGGCGATCTCACCGCAGAGCTGGCCCGCCTCTCCGGCACCGGCCC
TTTGAACGCGGCGCGTCGGCACGACGTGAGGCAGCAGCTCGTCGCGCTGC
TCAAGGAGCGCCGCACCGCCGCCGACGGGGAAGACCAAGGCGCCCCTGGC
AGCGGCAGCAGCAACGGCGCCGGCGCCGACGACAGCGTCAGCCGTCTCGA
CCAGTTGCCGCCGCCGCTGGTGCAAGCCGTTGCCGCTGCGCTCGACCCGC
CGTCCTTCGCACGCCTCGGCGTCGCCTGTAAGGACGCCGCCACCATGCTT
TCGTCGTCCCGCGCCCCGGTCGTCGCTCGCTGTGGCGCGTTCAGAGCGCT
CTTCCGGCGGTTCCACGGAGACCTCCCCGCCGCGATGCCCCGCCGCCTCC
ATCTGCTCAACGCCATGGCGGCGCTGGTGCCGCCGTCGGCCGGTGACCCG
GGATTCGCCGCCGCCTGCGACGTCATCGAAGCCCGTATCATGAACATGCG
TCCCGGTTCGTCGCTCGATGCGGAGCTGGCGGCTATGGCTGCCGCGGCCC
GGCGTTACCGCCTCGTGCCGCCGCCACCGCCGCAGCGGCAACCACAGACG
GTGGACGGGGCAGCATCAGAAGGGACGGTGGCAGCCGCGGCCGCAGCGGC
GTCTGTGGCCGCTGCGGCGGCAATGGTGGCACCAGCGTCCATCGCGGGGA
CTGCAGCGTCCGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6656:2072..3335+

>mRNA_P-wetherbeei_contig6656.2.1 ID=mRNA_P-wetherbeei_contig6656.2.1|Name=mRNA_P-wetherbeei_contig6656.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=867bp|location=Sequence derived from alignment at P-wetherbeei_contig6656:2072..3335+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATGAGCAACGAAGGTGCGGCAGGCGACGACCTGGCCGTCGCGTCGCC
TCACGCGGCTGGGCTGACCACGGTGCGGCTCGAGGAAAACGAGCCTGCTG
CCGCCACCGCCGTCGCCGACGCCGAGGCGCGAGGCGGTCAGCTCACCGGG
ACAGAGATTGGCGATCTCACCGCAGAGCTGGCCCGCCTCTCCGGCACCGG
CCCTTTGAACGCGGCGCGTCGGCACGACGTGAGGCAGCAGCTCGTCGCGC
TGCTCAAGGAGCGCCGCACCGCCGCCGACGGGGAAGACCAAGGCGCCCCT
GGCAGCGGCAGCAGCAACGGCGCCGGCGCCGACGACAGCGTCAGCCGTCT
CGACCAGTTGCCGCCGCCGCTGGTGCAAGCCGTTGCCGCTGCGCTCGACC
CGCCGTCCTTCGCACGCCTCGGCGTCGCCTGTAAGGACGCCGCCACCATG
CTTTCGTCGTCCCGCGCCCCGGTCGTCGCTCGCTGTGGCGCGTTCAGAGC
GCTCTTCCGGCGGTTCCACGGAGACCTCCCCGCCGCGATGCCCCGCCGCC
TCCATCTGCTCAACGCCATGGCGGCGCTGGTGCCGCCGTCGGCCGGTGAC
CCGGGATTCGCCGCCGCCTGCGACGTCATCGAAGCCCGTATCATGAACAT
GCGTCCCGGTTCGTCGCTCGATGCGGAGCTGGCGGCTATGGCTGCCGCGG
CCCGGCGTTACCGCCTCGTGCCGCCGCCACCGCCGCAGCGGCAACCACAG
ACGGTGGACGGGGCAGCATCAGAAGGGACGGTGGCAGCCGCGGCCGCAGC
GGCGTCTGTGGCCGCTGCGGCGGCAATGGTGGCACCAGCGTCCATCGCGG
GGACTGCAGCGTCCGCT
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