mRNA_P-wetherbeei_contig6654.1.10 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6654.1.10
Unique NamemRNA_P-wetherbeei_contig6654.1.10
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6654.1.10 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6654contigP-wetherbeei_contig6654:150..2721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo132189
PFAMsAAA
Model size1694
Max annot lvl4776|Peronosporales
KEGG koko:K06027
KEGG TC1.F.1.1
KEGG Pathwayko04138,ko04721,ko04727,ko04962,map04138,map04721,map04727,map04962
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.54e-05
EggNOG OGsCOG0464@1|root,KOG0741@2759|Eukaryota,3Q96E@4776|Peronosporales
EC3.6.4.6
DescriptionAAA domain (Cdc48 subfamily)
Cds size897
COG categoryO
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6654.1.10prot_P-wetherbeei_contig6654.1.10Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6654 898..2492 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186928.030443-UTR-P-wetherbeei_contig6654:149..5721683186928.030443-UTR-P-wetherbeei_contig6654:149..572Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6654 150..572 +
1683186928.0401385-UTR-P-wetherbeei_contig6654:752..8971683186928.0401385-UTR-P-wetherbeei_contig6654:752..897Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6654 753..897 +
1683186928.0889835-UTR-P-wetherbeei_contig6654:2492..27211683186928.0889835-UTR-P-wetherbeei_contig6654:2492..2721Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6654 2493..2721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186928.0480902-CDS-P-wetherbeei_contig6654:897..11771683186928.0480902-CDS-P-wetherbeei_contig6654:897..1177Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6654 898..1177 +
1683186928.0590782-CDS-P-wetherbeei_contig6654:1386..15181683186928.0590782-CDS-P-wetherbeei_contig6654:1386..1518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6654 1387..1518 +
1683186928.0692174-CDS-P-wetherbeei_contig6654:1825..22381683186928.0692174-CDS-P-wetherbeei_contig6654:1825..2238Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6654 1826..2238 +
1683186928.079373-CDS-P-wetherbeei_contig6654:2420..24921683186928.079373-CDS-P-wetherbeei_contig6654:2420..2492Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6654 2421..2492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6654.1.10

>prot_P-wetherbeei_contig6654.1.10 ID=prot_P-wetherbeei_contig6654.1.10|Name=mRNA_P-wetherbeei_contig6654.1.10|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=299bp
MCEICFAEFHPFTIFRPSFYLITLSCSMPRGRRRGMLRLPRTIIMAESPV
GGTVADSVVGAAHALEREMSRNALKHLLEQRPDVSELGKQGICHVNVAPV
LQAISVHLDRRLTGAVLSKKLRRRPSLHDMNDCGWFAAYLDDDAAPAGGA
GGYRGQSTEDDRGGYDRTCHGGRGSGSIIVGGSSDGIIGRVGCGGSSAVL
EDAGADADVEVEAEAEAPVDARTRYAIALKAAAHLAALEAISVEECGALK
DLILDDEKCIADAVSAFEASGDVVEMLDKFHEIVLQGIGRSQGLGSGR*
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mRNA from alignment at P-wetherbeei_contig6654:150..2721+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6654.1.10 ID=mRNA_P-wetherbeei_contig6654.1.10|Name=mRNA_P-wetherbeei_contig6654.1.10|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2572bp|location=Sequence derived from alignment at P-wetherbeei_contig6654:150..2721+ (Phaeothamnion wetherbeei SAG_119_79)
TTTCTGCCGATACCTCATGCGCAGCAAAAGTTGCAAACGAGCCAGACTCG
GAAATTCCCATGTCAGCGCCGCAAGAGCTTGATGGAGGTGCGGTATTTGG
GTTGCAGGTATAGCTTTGCATTCCAATTCCAGTCCTTTGTTGCTCGGAAT
TCCTCAAAATACACTGTTTCCAACCTCTCCACAATTCGGATGGATGTGGC
GCAGTTGGGCTGCAGGGGCGGCTGGAGCGGCGGCCCAGCGTCGCCGAGCT
GCAGAAGCGGCATGTGCTGGAGGGCCATGAGCTGGGTGCCGAGGCGCCCA
TCGTGTCCAACGGCAAGGCGAAGCTCGAGTACAAGCTGGTCGCCGACCGC
CTCAAGGAGCACCTGCTGACGCAGCCCGACGAGACGACGCTGCGCAGCTG
CGGGATCATGCCGGGAGGCGCAGGTGTCGCCGCGAGGCCAACCTGACCAC
CCGAAGCAGAATTATTGCTTTCAGCAAAGTGCCGCGATTTCCTCGTCTTG
CATCGTTGTCGGTCGGCTGGATCCTCGCGGTCCCCAAAAGCATTTGGTTT
GTATTCCTGCGTTCCCACGCCGTTTGGGTAAACCCTAACTTAATGTCTTA
CAGGCAAGGTGGCGCCGGCGCTGCAGGCGGCGCAGCGTATGCTGTCGCTC
AACTTGAAACGCTCGCGCGTCGATTCGATGCTGTCCCACCGCCCTTCGCG
GCGGCAGCTTCAGGAGGCCGGTGTTCATCTCGGTGAGAAAAGGCGTTTAT
GTGCGAGATCTGTTTCGCAGAATTCCACCCCTTTACCATTTTCCGTCCCT
CCTTCTACCTTATCACTCTAAGTTGCTCGATGCCTCGTGGCCGGCGGCGG
GGAATGCTGCGTTTGCCGCGCACCATCATCATGGCGGAATCTCCCGTAGG
CGGCACGGTGGCGGACAGCGTGGTGGGCGCGGCGCATGCCCTAGAACGGG
AGATGAGCCGGAATGCCCTCAAGCACCTGCTAGAACAGCGGCCCGATGTC
AGCGAGCTGGGCAAACAGGGCATATGCCGTGAGTTCGGAGGAGCGTCGCT
GCGCTCCGACAGTTTTCCCCCTCTCTTTCCGCTGTTCACCTCGCTTCGCT
TCTCTCAGGATGCATTTGGAGGGCCAATGGCAGTGAAGTGGGTTGTTTGC
ACCGCGGAAAAAATGCACCGCGCAGCTCGCAAGTGAGCTCTTAAGCACGA
CTTATGCCTGTTTATTCCGTCTCCACCCGAATTGCAGACGTCAATGTGGC
GCCAGTACTTCAGGCGATTTCGGTGCATCTCGACCGCCGCCTCACCGGCG
CCGTGCTCTCGAAGAAGCTACGGAGGCGGCCGTCGCTGCATGACATGAAC
GACTGTGGATGGTTTGCAGGTGAGAGAGCTATTTCTGGGGGGTTGCAGCA
GTCACTGCTCCAAATCGCTGTTATCGACGTTGCCGCCGCTTATTCCGCCT
CTACCGCCCATCCGACGCTTTTGTCCTCAGAGCCAATGTTTACCAGTATC
GCTATTGCAGTGCGGTATGTGAGTCACCCTGATTTCAGTGGGCACTTCCT
AAGGGATTTTGTTGGCTGCATTTACTCCTCTATCTTACCGTTGGTCCTCA
TATCCCGCTGCTTTATTGCAAGCCTTTCGCCTCCCTTCCCTCCCCGCCAA
TGATGCGCTTTTAACATCGTTTGCAGCCTACTTGGACGACGATGCCGCAC
CAGCAGGCGGTGCTGGCGGCTACCGCGGGCAGTCTACCGAGGATGATCGC
GGTGGTTACGACAGAACCTGCCACGGAGGCCGTGGCAGTGGCAGCATCAT
CGTTGGCGGCAGCAGCGACGGTATCATTGGCCGCGTCGGCTGCGGGGGCA
GCAGCGCCGTCTTGGAAGACGCCGGGGCCGACGCTGACGTCGAGGTGGAG
GCGGAAGCCGAGGCGCCGGTGGATGCCCGTACGCGGTACGCCATCGCGCT
GAAGGCGGCGGCCCACCTGGCGGCGCTGGAGGCCATCAGCGTGGAGGAGT
GTGGCGCTCTGAAGGACCTGATTCTGGACGACGAAAAGTGCATCGCGGAC
GCCGTATCCGCCTTCGAGGCCAGCGGGGACGTCGTCGAGGTGCGGAGAGG
GTATCCGGGGGCAGGGGGCGGGGGCGTCGGGTGTATGTAGTCTTTTACGC
TGTAGATTTGATCCTTCCGTTTGGTGCTCCGTCTACGATGCGGACAAGAC
CTTCGTTGTGTCGTCTGACCTTCCTCGTGCCGCCTGTGCCGGTCGCGGCT
GAAATTCTCTCCTGCGTGCAGATGCTCGACAAGTTCCATGAAATAGTCCT
TCAAGGCATCGGGCGATCCCAGGGGCTAGGAAGCGGACGGTAAAAAGATG
GTGCTACGGTGCTTGGAAGTGAACGTCTTCAGGATGGTTCTTGTGCTGGC
GTAGCGAGATGAAACAGGAAAAGATTTTTGGCTGCTGTCGGGAGCTGCGT
GCCCGGCATTCCACCGACGCGCCCATTGCCAAAGACACACCGGTGGGCGG
TGGGCTGCCTCGCGATTCCCTCCTTTTCAGCTCTTCGCGCAGAGGTGTAA
TGTTTCATATTGTTGACTGTCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6654:150..2721+

>mRNA_P-wetherbeei_contig6654.1.10 ID=mRNA_P-wetherbeei_contig6654.1.10|Name=mRNA_P-wetherbeei_contig6654.1.10|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=897bp|location=Sequence derived from alignment at P-wetherbeei_contig6654:150..2721+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCGAGATCTGTTTCGCAGAATTCCACCCCTTTACCATTTTCCGTCC
CTCCTTCTACCTTATCACTCTAAGTTGCTCGATGCCTCGTGGCCGGCGGC
GGGGAATGCTGCGTTTGCCGCGCACCATCATCATGGCGGAATCTCCCGTA
GGCGGCACGGTGGCGGACAGCGTGGTGGGCGCGGCGCATGCCCTAGAACG
GGAGATGAGCCGGAATGCCCTCAAGCACCTGCTAGAACAGCGGCCCGATG
TCAGCGAGCTGGGCAAACAGGGCATATGCCACGTCAATGTGGCGCCAGTA
CTTCAGGCGATTTCGGTGCATCTCGACCGCCGCCTCACCGGCGCCGTGCT
CTCGAAGAAGCTACGGAGGCGGCCGTCGCTGCATGACATGAACGACTGTG
GATGGTTTGCAGCCTACTTGGACGACGATGCCGCACCAGCAGGCGGTGCT
GGCGGCTACCGCGGGCAGTCTACCGAGGATGATCGCGGTGGTTACGACAG
AACCTGCCACGGAGGCCGTGGCAGTGGCAGCATCATCGTTGGCGGCAGCA
GCGACGGTATCATTGGCCGCGTCGGCTGCGGGGGCAGCAGCGCCGTCTTG
GAAGACGCCGGGGCCGACGCTGACGTCGAGGTGGAGGCGGAAGCCGAGGC
GCCGGTGGATGCCCGTACGCGGTACGCCATCGCGCTGAAGGCGGCGGCCC
ACCTGGCGGCGCTGGAGGCCATCAGCGTGGAGGAGTGTGGCGCTCTGAAG
GACCTGATTCTGGACGACGAAAAGTGCATCGCGGACGCCGTATCCGCCTT
CGAGGCCAGCGGGGACGTCGTCGAGATGCTCGACAAGTTCCATGAAATAG
TCCTTCAAGGCATCGGGCGATCCCAGGGGCTAGGAAGCGGACGGTAA
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