mRNA_P-wetherbeei_contig665.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig665.2.1
Unique NamemRNA_P-wetherbeei_contig665.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig665.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig665contigP-wetherbeei_contig665:2222..3091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog157072.XP_008867698.1
Model size870
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000502
EggNOG OGs2DXZQ@1|root,2S516@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_005870.1
Cds size480
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186927.6412966-UTR-P-wetherbeei_contig665:2221..26111683186927.6412966-UTR-P-wetherbeei_contig665:2221..2611Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig665 2222..2611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186927.651734-CDS-P-wetherbeei_contig665:2611..30911683186927.651734-CDS-P-wetherbeei_contig665:2611..3091Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig665 2612..3091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig665.2.1prot_P-wetherbeei_contig665.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig665 2612..3091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig665.2.1

>prot_P-wetherbeei_contig665.2.1 ID=prot_P-wetherbeei_contig665.2.1|Name=mRNA_P-wetherbeei_contig665.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
EAQRRLEALLRGGHFSRHRHTNSRSIDITAGRDRVVLKLCNDATAVEWSV
LPPHPAAAAVALPSVAGPKRGNVDLAAVAAVVPTGEAGLVILGDSGTKLL
EVDAESVEVRASVFLLFRFCCLRSVFLHSVSPWGFSCTVPVSFRSPLLVD
LLFFLRLSM*
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mRNA from alignment at P-wetherbeei_contig665:2222..3091-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig665.2.1 ID=mRNA_P-wetherbeei_contig665.2.1|Name=mRNA_P-wetherbeei_contig665.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=870bp|location=Sequence derived from alignment at P-wetherbeei_contig665:2222..3091- (Phaeothamnion wetherbeei SAG_119_79)
GAGGCGCAGAGGCGGCTCGAGGCGCTGCTGCGCGGGGGCCACTTCAGCCG
CCACCGCCACACCAACAGCCGGAGCATTGACATAACCGCCGGCCGCGACC
GCGTCGTCCTCAAACTCTGTAACGACGCCACTGCCGTTGAGTGGAGTGTG
CTGCCGCCGCACCCGGCGGCAGCGGCGGTGGCGCTGCCGTCCGTGGCGGG
CCCGAAACGTGGGAACGTGGACCTGGCAGCCGTGGCGGCGGTGGTGCCGA
CGGGGGAGGCAGGCCTGGTGATACTCGGCGACAGCGGTACTAAGCTTCTG
GAGGTCGACGCGGAGTCCGTAGAGGTGCGTGCGAGTGTTTTTCTGCTTTT
CCGTTTTTGTTGTTTACGTTCTGTTTTCTTGCATTCTGTTTCTCCTTGGG
GGTTTTCGTGTACTGTCCCGGTTTCGTTTCGTTCACCCCTGTTGGTCGAT
TTGCTGTTCTTCTTACGTTTGTCAATGTAGTCGTTGTCAGCAGGGGGGAG
GGCCGAATCTTTTGCTTGTCGCGGGCAGCAGTGGCGGCGGCTGATAGTTG
CGGCGGCGGCGCCGTGACGCTGCTTAGTTGTTCGGCATCGGCCGTTGTGT
GATCTCCGATGTGCGATCTGTCTCGGTTCGGGTAACTTGCGAGTCGTCTT
TTGTCTTTGTTCAGGAGTTCCCTCCCTTCTTTCGTTGCCGTGTACAATTT
CTCGTTTTCCTGGGCCGTCTGCTCTCTTCATTCTCTCCATTTGACTGCTA
CATCTCGCAGCGGTCGGAAAGAGGCCCTACCTCTTCCCTTGTAATGTGTG
GCGACGGGGACTTTAACCGAAGCTTTACGTTCTTCGATTCTTGTTGTGTT
GATTAGTGCTCTGCGCCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig665:2222..3091-

>mRNA_P-wetherbeei_contig665.2.1 ID=mRNA_P-wetherbeei_contig665.2.1|Name=mRNA_P-wetherbeei_contig665.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig665:2222..3091- (Phaeothamnion wetherbeei SAG_119_79)
GAGGCGCAGAGGCGGCTCGAGGCGCTGCTGCGCGGGGGCCACTTCAGCCG
CCACCGCCACACCAACAGCCGGAGCATTGACATAACCGCCGGCCGCGACC
GCGTCGTCCTCAAACTCTGTAACGACGCCACTGCCGTTGAGTGGAGTGTG
CTGCCGCCGCACCCGGCGGCAGCGGCGGTGGCGCTGCCGTCCGTGGCGGG
CCCGAAACGTGGGAACGTGGACCTGGCAGCCGTGGCGGCGGTGGTGCCGA
CGGGGGAGGCAGGCCTGGTGATACTCGGCGACAGCGGTACTAAGCTTCTG
GAGGTCGACGCGGAGTCCGTAGAGGTGCGTGCGAGTGTTTTTCTGCTTTT
CCGTTTTTGTTGTTTACGTTCTGTTTTCTTGCATTCTGTTTCTCCTTGGG
GGTTTTCGTGTACTGTCCCGGTTTCGTTTCGTTCACCCCTGTTGGTCGAT
TTGCTGTTCTTCTTACGTTTGTCAATGTAG
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