mRNA_P-wetherbeei_contig6649.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6649.1.1
Unique NamemRNA_P-wetherbeei_contig6649.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6649.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6649contigP-wetherbeei_contig6649:1871..2976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size834
Hectar predicted targeting categoryother localisation
Exons2
Cds size819
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186927.5981498-CDS-P-wetherbeei_contig6649:1870..19091683186927.5981498-CDS-P-wetherbeei_contig6649:1870..1909Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6649 1871..1909 -
1683186927.6077936-CDS-P-wetherbeei_contig6649:2182..29621683186927.6077936-CDS-P-wetherbeei_contig6649:2182..2962Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6649 2183..2962 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186927.6166446-UTR-P-wetherbeei_contig6649:2962..29761683186927.6166446-UTR-P-wetherbeei_contig6649:2962..2976Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6649 2963..2976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6649.1.1prot_P-wetherbeei_contig6649.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6649 1871..2962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6649.1.1

>prot_P-wetherbeei_contig6649.1.1 ID=prot_P-wetherbeei_contig6649.1.1|Name=mRNA_P-wetherbeei_contig6649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=273bp
MEVASPGGSSPRYTNDGQPPLMRLKIRAMTAPNRPDGAVEPADFELEGEY
PPAADGEPSDQFQEAGPEEGVPLQEQHQQQQQQVPQEPPQMPPAPPLMPP
TPPLMPPAPPLMPPAPPLMPPALPQMPSAQSHVPPVLQEVPLQMSQAPPQ
VPPPQAPQTPSQVWQSAAPVPLGLVQRSPEQIPLPPPAVPQPRRRPWSAT
ADYRKPSAEVRQKYIGQEVVKVLDGCNSGSDSAQVRGQVVSFHGKTRHFV
VEYQDGTMEEASFSRLNGLLNAA
back to top

mRNA from alignment at P-wetherbeei_contig6649:1871..2976-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6649.1.1 ID=mRNA_P-wetherbeei_contig6649.1.1|Name=mRNA_P-wetherbeei_contig6649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1106bp|location=Sequence derived from alignment at P-wetherbeei_contig6649:1871..2976- (Phaeothamnion wetherbeei SAG_119_79)
AGGTGGCTTCGCCAATGGAAGTGGCGTCGCCCGGGGGATCGTCTCCTCGC
TACACCAACGATGGGCAGCCGCCCCTCATGCGTCTGAAGATAAGGGCTAT
GACGGCTCCGAACCGCCCAGATGGGGCGGTCGAACCGGCAGACTTTGAGC
TTGAAGGGGAGTACCCACCCGCTGCCGATGGCGAGCCGTCCGACCAGTTT
CAGGAGGCGGGGCCGGAGGAAGGGGTGCCTCTGCAGGAGCAGCACCAGCA
GCAGCAGCAGCAGGTGCCGCAGGAGCCGCCGCAGATGCCGCCGGCGCCGC
CACTAATGCCGCCGACGCCGCCACTAATGCCGCCGGCGCCGCCACTAATG
CCGCCGGCGCCGCCACTAATGCCGCCGGCGCTCCCGCAAATGCCATCGGC
GCAGTCGCATGTGCCACCGGTGCTGCAGGAGGTTCCGCTGCAGATGTCGC
AGGCTCCGCCGCAGGTGCCGCCGCCTCAGGCGCCGCAGACGCCGTCGCAG
GTGTGGCAGTCGGCGGCGCCGGTCCCACTGGGGCTGGTCCAACGATCGCC
GGAACAGATACCGCTGCCGCCGCCGGCGGTACCTCAGCCGCGGCGCCGCC
CGTGGTCGGCCACAGCCGACTACCGCAAGCCGTCCGCCGAAGTCCGACAG
AAGTACATCGGGCAGGAAGTGGTGAAGGTCCTTGATGGCTGCAACAGCGG
CAGTGACAGCGCTCAAGTGCGCGGCCAGGTGGTCTCTTTCCACGGCAAGA
CGCGCCACTTCGTCGTCGAGTATCAGGACGGCACCATGGAGGAGGTTAGC
AGAGCCAGCTCTTCGCCGTGGGTTGGCCTTTGGTTTCTTTGTTTCTTCCA
GCAAAATTTTATCGCAAACATCTCCGTTTTCTTCGGCGCCGTTTCCCCCT
GTTCGGCGGCCATGATAAAGAGGTGAATGCTTGAAAGTTCCCCCGTAGGC
GTTCATTCTTTTATGGATTTTGCCTACCATGTTGACACGTGTGACAGGCC
ACCTCACCTGGGCGCTTCCGTTCGTTTACCATCTTTCGTATCTTCTTCTG
TGCGCGGCAACGGACAGGCGAGCTTTTCGCGGCTGAACGGACTGCTCAAC
GCGGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6649:1871..2976-

>mRNA_P-wetherbeei_contig6649.1.1 ID=mRNA_P-wetherbeei_contig6649.1.1|Name=mRNA_P-wetherbeei_contig6649.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=819bp|location=Sequence derived from alignment at P-wetherbeei_contig6649:1871..2976- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGTGGCGTCGCCCGGGGGATCGTCTCCTCGCTACACCAACGATGG
GCAGCCGCCCCTCATGCGTCTGAAGATAAGGGCTATGACGGCTCCGAACC
GCCCAGATGGGGCGGTCGAACCGGCAGACTTTGAGCTTGAAGGGGAGTAC
CCACCCGCTGCCGATGGCGAGCCGTCCGACCAGTTTCAGGAGGCGGGGCC
GGAGGAAGGGGTGCCTCTGCAGGAGCAGCACCAGCAGCAGCAGCAGCAGG
TGCCGCAGGAGCCGCCGCAGATGCCGCCGGCGCCGCCACTAATGCCGCCG
ACGCCGCCACTAATGCCGCCGGCGCCGCCACTAATGCCGCCGGCGCCGCC
ACTAATGCCGCCGGCGCTCCCGCAAATGCCATCGGCGCAGTCGCATGTGC
CACCGGTGCTGCAGGAGGTTCCGCTGCAGATGTCGCAGGCTCCGCCGCAG
GTGCCGCCGCCTCAGGCGCCGCAGACGCCGTCGCAGGTGTGGCAGTCGGC
GGCGCCGGTCCCACTGGGGCTGGTCCAACGATCGCCGGAACAGATACCGC
TGCCGCCGCCGGCGGTACCTCAGCCGCGGCGCCGCCCGTGGTCGGCCACA
GCCGACTACCGCAAGCCGTCCGCCGAAGTCCGACAGAAGTACATCGGGCA
GGAAGTGGTGAAGGTCCTTGATGGCTGCAACAGCGGCAGTGACAGCGCTC
AAGTGCGCGGCCAGGTGGTCTCTTTCCACGGCAAGACGCGCCACTTCGTC
GTCGAGTATCAGGACGGCACCATGGAGGAGGCGAGCTTTTCGCGGCTGAA
CGGACTGCTCAACGCGGCG
back to top