mRNA_P-wetherbeei_contig6648.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6648.2.1
Unique NamemRNA_P-wetherbeei_contig6648.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6648.2.1 vs. uniprot
Match: A0A484L5U9_9ASTE (MULE domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484L5U9_9ASTE)

HSP 1 Score: 58.5 bits (140), Expect = 3.130e-6
Identity = 31/103 (30.10%), Postives = 59/103 (57.28%), Query Frame = 3 
Query:  615 LLMMDGFFLKGSWNGTGLVFTVGSANGELSEVCLVICDLKIEDNYLYGINNVLRHPDLAKTLQDSEWAVMSDRAEGLIWAVLEGIPKAVQQYCVKHLHRNAPG 923
            +L++DG F+K  + GT L      AN ++  +   ICD +  +++L+ ++NV +H      ++ S+  ++SDR +G+++AV +  P     YC +H+ RN  G
Sbjct:   18 ILIIDGTFMKAYFRGTLLAACTQDANRQIIPLAFGICDAENNESWLWFLSNV-KH----SLIERSDMCIISDRHDGILFAVDKVFPSIPHCYCTEHILRNLKG 115
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BLAST of mRNA_P-wetherbeei_contig6648.2.1 vs. uniprot
Match: A0A484M245_9ASTE (Beta-galactosidase n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484M245_9ASTE)

HSP 1 Score: 58.2 bits (139), Expect = 8.040e-6
Identity = 31/103 (30.10%), Postives = 59/103 (57.28%), Query Frame = 3 
Query:  615 LLMMDGFFLKGSWNGTGLVFTVGSANGELSEVCLVICDLKIEDNYLYGINNVLRHPDLAKTLQDSEWAVMSDRAEGLIWAVLEGIPKAVQQYCVKHLHRNAPG 923
            +L++DG F+K  + GT L      AN ++  +   ICD +  +++L+ ++NV +H      ++ S+  ++SDR +G+++AV +  P     YC +H+ RN  G
Sbjct:  209 ILIIDGTFMKAYFRGTLLTACTQDANRQIVPLAFGICDAENNESWLWFLSNV-KH----SLIERSDMCIISDRHDGILFAVDKLFPSIPHCYCTEHILRNLKG 306
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BLAST of mRNA_P-wetherbeei_contig6648.2.1 vs. uniprot
Match: A0A484KGU2_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KGU2_9ASTE)

HSP 1 Score: 57.8 bits (138), Expect = 9.160e-6
Identity = 31/103 (30.10%), Postives = 59/103 (57.28%), Query Frame = 3 
Query:  615 LLMMDGFFLKGSWNGTGLVFTVGSANGELSEVCLVICDLKIEDNYLYGINNVLRHPDLAKTLQDSEWAVMSDRAEGLIWAVLEGIPKAVQQYCVKHLHRNAPG 923
            +L++DG F+K  + GT L      AN ++  +   ICD +  +++L+ ++NV +H      ++ S+  ++SDR +G+++AV +  P     YC +H+ RN  G
Sbjct:  212 ILIIDGAFMKAYFRGTLLTACTQDANRQIVPLAFGICDAENNESWLWFLSNV-KH----SLIERSDICIISDRHDGILFAVDKVFPSIPHCYCTEHILRNLKG 309
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BLAST of mRNA_P-wetherbeei_contig6648.2.1 vs. uniprot
Match: A0A484LTE2_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484LTE2_9ASTE)

HSP 1 Score: 57.0 bits (136), Expect = 2.070e-5
Identity = 31/103 (30.10%), Postives = 59/103 (57.28%), Query Frame = 3 
Query:  615 LLMMDGFFLKGSWNGTGLVFTVGSANGELSEVCLVICDLKIEDNYLYGINNVLRHPDLAKTLQDSEWAVMSDRAEGLIWAVLEGIPKAVQQYCVKHLHRNAPG 923
            +L++DG F+K  + GT L      AN ++  +   ICD +  +++L+ ++NV +H      ++ S+  ++SDR +G+++AV +  P     YC +H+ RN  G
Sbjct:  334 ILIIDGTFMKAYFRGTLLTACTQDANRQIVPLEFGICDAENNESWLWFLSNV-KH----SLIERSDMCIISDRHDGILFAVDKVFPSIPHCYCTEHILRNLKG 431
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BLAST of mRNA_P-wetherbeei_contig6648.2.1 vs. uniprot
Match: A0A484N447_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N447_9ASTE)

HSP 1 Score: 56.6 bits (135), Expect = 3.430e-5
Identity = 32/100 (32.00%), Postives = 53/100 (53.00%), Query Frame = 3 
Query:  615 LLMMDGFFLKGSWNGTGLVFTVGSANGELSEVCLVICDLKIEDNYLYGINNVLRHPDLAKTLQDSEWAVMSDRAEGLIWAVLEGIPKAVQQYCVKHLHRN 914
            +L++DG FLK  + GT L      AN ++  +   ICD + ++  ++ + NV R        + S   ++SDR EG+I+AV +  P     YC +H+ RN
Sbjct: 1126 ILIVDGTFLKAYFRGTLLTACTQDANRQIVPLAFGICDTESKETRMWFLTNVKR-----ALTERSNLYIISDRHEGIIYAVEQVFPSVSHGYCSEHILRN 1220
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BLAST of mRNA_P-wetherbeei_contig6648.2.1 vs. uniprot
Match: UPI000C1CCE58 (uncharacterized protein LOC111405123 isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CCE58)

HSP 1 Score: 55.5 bits (132), Expect = 6.190e-5
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = 3 
Query:  585 CGRGLQDG-KQLLMMDGFFLKGSWNGTGLVFTVGSANGELSEVCLVICDLKIEDNYLYGINNVLRHPDLAKTLQDSEWAVMSDRAEGLIWAVLEGI-PKAVQQYCVKHLHRN 914
            C RG  +G +QLL +DG FLKG++ G  LV  V  AN  +  V   I + +    + + I ++    DL K +  +EW  M+DR + L   V++G+ PK   ++CV+H++ N
Sbjct:  301 CKRGFFEGCRQLLGLDGCFLKGTFEGQMLVAVVLDANDCIYPVAYAIVERENATTWRWFIGHL--GEDL-KIMNSNEWTFMTDRQKDL-QNVIKGLYPKVEHRFCVRHMYTN 408
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6648.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A484L5U9_9ASTE3.130e-630.10MULE domain-containing protein n=1 Tax=Cuscuta cam... [more]
A0A484M245_9ASTE8.040e-630.10Beta-galactosidase n=1 Tax=Cuscuta campestris TaxI... [more]
A0A484KGU2_9ASTE9.160e-630.10Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A484LTE2_9ASTE2.070e-530.10Uncharacterized protein n=2 Tax=Cuscuta campestris... [more]
A0A484N447_9ASTE3.430e-532.00Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
UPI000C1CCE586.190e-534.82uncharacterized protein LOC111405123 isoform X1 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6648contigP-wetherbeei_contig6648:2171..3356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T003534
Model size933
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.56e-08
EggNOG OGs292NT@1|root,2RWF6@2759|Eukaryota,1MJTS@121069|Pythiales
Cds size621
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186927.5419269-CDS-P-wetherbeei_contig6648:2170..26711683186927.5419269-CDS-P-wetherbeei_contig6648:2170..2671Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6648 2171..2671 +
1683186927.5539432-CDS-P-wetherbeei_contig6648:2924..30441683186927.5539432-CDS-P-wetherbeei_contig6648:2924..3044Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6648 2925..3044 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186927.5651102-UTR-P-wetherbeei_contig6648:3044..33561683186927.5651102-UTR-P-wetherbeei_contig6648:3044..3356Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6648 3045..3356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6648.2.1prot_P-wetherbeei_contig6648.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6648 2171..3044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6648.2.1

>prot_P-wetherbeei_contig6648.2.1 ID=prot_P-wetherbeei_contig6648.2.1|Name=mRNA_P-wetherbeei_contig6648.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=207bp
METAESANAQGEATVSVGQHYNTSEDVRYYVEDYLLAGRRGLTSISSAGR
QTKYDCTGYNTKDRTGYTFRAYATQQAKGEWKISKVVDEHENCAAVPKAS
SAAIAAMLESHARQQEREVHAGPGIAQAAGFEADRRHVNNAKLRVKDMAL
GEDDSYQLMEPFLKAFAEKNPGSVSSVDKDEEWRFKRCYIVPNACAVGAC
RTESSS*
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mRNA from alignment at P-wetherbeei_contig6648:2171..3356+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6648.2.1 ID=mRNA_P-wetherbeei_contig6648.2.1|Name=mRNA_P-wetherbeei_contig6648.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1186bp|location=Sequence derived from alignment at P-wetherbeei_contig6648:2171..3356+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGACAGCTGAGTCTGCAAACGCGCAAGGGGAGGCTACAGTAAGCGT
AGGGCAGCATTATAATACCTCAGAGGACGTGCGCTACTATGTTGAGGACT
ATTTGCTCGCTGGAAGGCGCGGGCTGACCTCAATCTCTTCGGCTGGGCGG
CAGACGAAGTACGATTGTACAGGGTACAACACCAAGGACAGAACTGGCTA
CACCTTTCGTGCATATGCAACGCAGCAGGCGAAAGGCGAATGGAAGATAT
CCAAAGTAGTAGACGAGCACGAGAACTGCGCCGCTGTCCCGAAGGCGAGT
TCCGCGGCGATCGCGGCGATGCTGGAGTCGCATGCGCGCCAACAAGAACG
TGAAGTCCACGCAGGTCCAGGCATCGCTCAGGCAGCTGGGTTTGAGGCAG
ACCGGCGCCACGTCAACAACGCGAAGCTGCGCGTGAAGGACATGGCCCTG
GGCGAGGATGACTCATACCAGCTCATGGAGCCGTTCTTGAAGGCATTCGC
GGTTAGTTGCGACCCATTTTGTGTACCGGGTGTACCGCCTTTGCTCTTTC
CGTTTTTACGAGTGGAGTTTTCCAAACACTGCTGCGACTGCCGCATCGTT
GTTACTGTCGAGGTAGTGTCTTATCGTATTCACCCTTTCCTGCAATTGCT
AGCTCGTTTTGAATATTTGAATTTCTGCCTCCAATTCTCATTTAGTTTGC
GCCTTCTTTTGCGGATTCTGCCGGGATTAATGCCACTCCCCCCGCATTTA
TTAGGAGAAGAACCCCGGAAGCGTTTCGTCGGTGGACAAGGACGAGGAGT
GGCGCTTCAAGCGGTGCTACATCGTGCCGAATGCCTGTGCGGTCGGGGCC
TGCAGGACGGAAAGCAGCTCCTGATGATGGATGGTTTCTTCCTCAAGGGG
TCATGGAACGGGACGGGACTCGTGTTCACCGTCGGCTCGGCAAACGGCGA
GCTCTCCGAGGTCTGCCTAGTGATATGCGACCTCAAGATCGAGGACAACT
ACCTGTACGGCATCAACAACGTGCTCCGGCACCCTGACCTCGCCAAGACG
CTGCAGGACAGCGAGTGGGCCGTGATGTCCGACCGCGCGGAGGGCCTCAT
CTGGGCGGTGCTCGAGGGGATCCCAAAGGCAGTCCAGCAATACTGCGTCA
AGCACCTTCACCGGAATGCTCCGGGGGCAAGCCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6648:2171..3356+

>mRNA_P-wetherbeei_contig6648.2.1 ID=mRNA_P-wetherbeei_contig6648.2.1|Name=mRNA_P-wetherbeei_contig6648.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=621bp|location=Sequence derived from alignment at P-wetherbeei_contig6648:2171..3356+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGACAGCTGAGTCTGCAAACGCGCAAGGGGAGGCTACAGTAAGCGT
AGGGCAGCATTATAATACCTCAGAGGACGTGCGCTACTATGTTGAGGACT
ATTTGCTCGCTGGAAGGCGCGGGCTGACCTCAATCTCTTCGGCTGGGCGG
CAGACGAAGTACGATTGTACAGGGTACAACACCAAGGACAGAACTGGCTA
CACCTTTCGTGCATATGCAACGCAGCAGGCGAAAGGCGAATGGAAGATAT
CCAAAGTAGTAGACGAGCACGAGAACTGCGCCGCTGTCCCGAAGGCGAGT
TCCGCGGCGATCGCGGCGATGCTGGAGTCGCATGCGCGCCAACAAGAACG
TGAAGTCCACGCAGGTCCAGGCATCGCTCAGGCAGCTGGGTTTGAGGCAG
ACCGGCGCCACGTCAACAACGCGAAGCTGCGCGTGAAGGACATGGCCCTG
GGCGAGGATGACTCATACCAGCTCATGGAGCCGTTCTTGAAGGCATTCGC
GGAGAAGAACCCCGGAAGCGTTTCGTCGGTGGACAAGGACGAGGAGTGGC
GCTTCAAGCGGTGCTACATCGTGCCGAATGCCTGTGCGGTCGGGGCCTGC
AGGACGGAAAGCAGCTCCTGA
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