mRNA_P-wetherbeei_contig6641.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6641.1.1
Unique NamemRNA_P-wetherbeei_contig6641.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6641.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6641contigP-wetherbeei_contig6641:753..3346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1388
Hectar predicted targeting categoryother localisation
Exons5
Cds size1251
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6641.1.1prot_P-wetherbeei_contig6641.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6641 828..3284 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186927.09133-UTR-P-wetherbeei_contig6641:752..8271683186927.09133-UTR-P-wetherbeei_contig6641:752..827Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6641 753..827 +
1683186927.167845-UTR-P-wetherbeei_contig6641:3284..33461683186927.167845-UTR-P-wetherbeei_contig6641:3284..3346Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6641 3285..3346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186927.1024036-CDS-P-wetherbeei_contig6641:827..11991683186927.1024036-CDS-P-wetherbeei_contig6641:827..1199Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6641 828..1199 +
1683186927.1131747-CDS-P-wetherbeei_contig6641:1604..18161683186927.1131747-CDS-P-wetherbeei_contig6641:1604..1816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6641 1605..1816 +
1683186927.1311586-CDS-P-wetherbeei_contig6641:2057..21241683186927.1311586-CDS-P-wetherbeei_contig6641:2057..2124Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6641 2058..2124 +
1683186927.1426702-CDS-P-wetherbeei_contig6641:2343..25521683186927.1426702-CDS-P-wetherbeei_contig6641:2343..2552Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6641 2344..2552 +
1683186927.153908-CDS-P-wetherbeei_contig6641:2893..32841683186927.153908-CDS-P-wetherbeei_contig6641:2893..3284Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6641 2894..3284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6641.1.1

>prot_P-wetherbeei_contig6641.1.1 ID=prot_P-wetherbeei_contig6641.1.1|Name=mRNA_P-wetherbeei_contig6641.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=417bp
MLEARLSPSGLAGLAKSPWGGGGLFTRPPQPRVRSTHVVCQGIAASGSDG
DRLRLRRSAGKPPFQEPRRSDESLESRAQRIYKFAKAKNFAEVIATYEAF
SDPIGDTGLANLVCNAARATGNWEVASRVIDDLSANDAMPDVFTYNAAIA
ACAGSSASSSTSPSPQRPGSWRRAVQLLDIMRQRGVRPDVVSYNTCMHVC
GRAKQWQRVLHLLGDMKVHGPTPNVYTWNTALSALARGGQHAAALGLLDE
MRGAGQRPDAVTYRAAAAACEQGGLWEAALELLEQHRAELGSEPDVQMYT
SVVNACRRARQAGPALQLLDEMAAKGVEATDRIYNRWGIPASGTYLVGLA
PISFCFSLLLLHVCSYLNSRSFATAICPSGRDCSRCSVISGLLANPLVFL
SFLFSCRCTLALPLTA*
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mRNA from alignment at P-wetherbeei_contig6641:753..3346+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6641.1.1 ID=mRNA_P-wetherbeei_contig6641.1.1|Name=mRNA_P-wetherbeei_contig6641.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2594bp|location=Sequence derived from alignment at P-wetherbeei_contig6641:753..3346+ (Phaeothamnion wetherbeei SAG_119_79)
CAACTTTGGAACAATGCACGCGCTCTCGAAAACGAGCAAAAGAGCCGGTC
ATACCGACAAATCGTGAAATAAAGCATGCTGGAGGCCCGGCTTTCGCCGT
CGGGCCTGGCAGGCTTGGCAAAGTCGCCATGGGGCGGCGGTGGCCTCTTC
ACCCGCCCACCTCAACCTCGTGTTCGGTCTACGCACGTTGTGTGTCAAGG
AATCGCTGCTTCAGGGAGCGATGGTGATCGCCTCCGACTTCGCAGAAGTG
CCGGCAAACCGCCGTTTCAGGAGCCAAGGCGTTCCGATGAATCGCTGGAG
TCCCGCGCACAAAGAATCTACAAGTTTGCCAAGGCCAAGAATTTCGCTGA
GGTTATCGCCACATACGAAGCCTTTTCTGACCCGATCGGAGATACTGGCT
TGGCGAATCTCGTATGCAATGCGGCTCGAGCAACTGGAAACTGGGAGGTG
AGCTTTGTTGCTGGCCAAAACAGATGTGCTCCAACTTTCGTGTGTTACAT
GCGCTTAGGCTTTGGAAGCTAGAAATCTTTGGTTCCATGCCATGTGCAAA
TTGCATGCGCGACCAAGTGTTCACTCTGGCTGTATTTGTGCTCCATTGGC
CCGGGTTTTTATGAAAGACCAAGGAAGTGAGATGGGCAACGCTCATGACA
TCAACTTGCCTCCCTTTACACCTATGCTACTCTTTTTTACACTGCTGCCG
GTCTCGAGACCACTGAAATCAAAGAATAGTTTCATGGCGCCTGCCGTCTT
CGCTCCAAGCCTCATTTACCGCCGTTGCCGCCGACCCAATACCGCCACCA
CCTTTTGCTGTCCCACTCGCCCTTCGTTGCCCGCCGCTGCGACCACCCGC
AGGTCGCGTCGCGCGTCATCGACGACCTGTCAGCCAACGACGCCATGCCC
GACGTCTTCACGTACAACGCTGCGATTGCTGCCTGCGCTGGTTCTTCGGC
ATCGTCGTCGACGTCTCCTTCGCCGCAGCGGCCCGGGTCATGGCGACGGG
CGGTGCAGCTGCTGGACATCATGCGGCAGCGCGGCGTGCGCCCGGACGTC
GTCTCTTACAACACGTGAGCATGGAAATCGTGTGCCGTTATCCACGGGGA
TGCCGAAGGTTCTGATGGGATTTTAGACATCTCAAAGAAGCTGTTGAGCT
ATTGTTCGTTTGGATACCGAATCTGATGGCCGCAGCACGGGCGAACTAGA
TGAGGGCCGTGTATCCTTTTATTGCTGCTCTCTTTCTTGCCTTCTACCTC
TTGCATTCTGTTTATTGGCATGCCTCACCATGCGCCAATTTACTTCGTGT
CGCAGGTGCATGCACGTGTGCGGACGTGCCAAGCAGTGGCAGCGTGTCCT
CCATCTTCTTGGAGACATGAAGGTGTGAGCACCAAAGCATTCTCGCTCTG
ACCATCCATTCTTGAAAAATTCTTCCCCTTCTCGCAAACTGCTTGATTTC
TGGAGATTAAATGGCGACCCTCGTCTCTTCCCGTTGCCCCTTTTGTTTAC
GCTAATCAACCATCCGAGTTTTGCTTCGCATCTCCTCGCCAGTTGTTGTT
GCCCCCACCAGAATATCCGCCTTTTCCTCTCCCCTGCGCAGGTGCACGGG
CCGACGCCCAACGTGTACACGTGGAATACGGCGCTTTCGGCGCTGGCCCG
CGGCGGGCAGCACGCGGCAGCGCTGGGCTTGCTGGATGAGATGCGTGGGG
CGGGGCAGCGGCCGGATGCTGTCACCTACCGCGCGGCGGCGGCGGCGTGC
GAGCAGGGCGGCCTGTGGGAGGCGGCGCTCGAGCTGTTGGAGCAGCACAG
GTGTGTGAGGAAAAGGGAAGGAGACGATTCCACCGTTGGACTAGGGAAAG
CGTTGAAAGAACAGGTGTCCAGAAGAGTTGAAAGGAGAGTCCCTGCTCCC
AACCTTTCGCGAAGCTCGCGCACCGATGCTCTAAACAGTGCGGATGCTGC
TGTCAACGAGGAGTTGCCCGCTTGAGGCACCATTTTGGTGAAGGGTGCTT
GAATTTACCCGTTCTTGGACCGAAAGCCAGTCAAGTCAGAGCTGCCGCAC
CATCGTTGCTTCTCTTTTGGTCATCTCTGTGTCATTGTTGTATGCTTCTC
CTTTGGTCACCTTTGTCATCATGCGTCCATCGTCTTTGCAGGGCAGAACT
GGGGTCAGAGCCAGATGTCCAAATGTACACATCGGTGGTTAACGCGTGCC
GGCGGGCACGGCAGGCGGGGCCCGCGCTGCAGCTGCTGGATGAGATGGCT
GCGAAGGGCGTCGAGGCCACAGACCGCATCTACAACAGGTGGGGCATTCC
AGCCAGCGGCACTTATCTGGTCGGGCTAGCTCCTATTTCCTTCTGTTTCT
CCTTATTGCTGCTTCACGTCTGCAGTTATTTAAATTCGAGATCCTTCGCT
ACTGCGATTTGTCCTTCAGGACGTGACTGCTCTCGTTGCTCGGTTATCAG
CGGGCTTCTTGCAAACCCCCTCGTGTTTCTCTCATTCCTCTTCTCCTGTC
GATGTACGCTTGCGCTTCCCCTTACAGCGTAATCGAGACTTGCGGGGATG
CGGGCCAGTGGGAAGATGCGGTGGACCTCCTCGATCGCATGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6641:753..3346+

>mRNA_P-wetherbeei_contig6641.1.1 ID=mRNA_P-wetherbeei_contig6641.1.1|Name=mRNA_P-wetherbeei_contig6641.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1251bp|location=Sequence derived from alignment at P-wetherbeei_contig6641:753..3346+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGAGGCCCGGCTTTCGCCGTCGGGCCTGGCAGGCTTGGCAAAGTC
GCCATGGGGCGGCGGTGGCCTCTTCACCCGCCCACCTCAACCTCGTGTTC
GGTCTACGCACGTTGTGTGTCAAGGAATCGCTGCTTCAGGGAGCGATGGT
GATCGCCTCCGACTTCGCAGAAGTGCCGGCAAACCGCCGTTTCAGGAGCC
AAGGCGTTCCGATGAATCGCTGGAGTCCCGCGCACAAAGAATCTACAAGT
TTGCCAAGGCCAAGAATTTCGCTGAGGTTATCGCCACATACGAAGCCTTT
TCTGACCCGATCGGAGATACTGGCTTGGCGAATCTCGTATGCAATGCGGC
TCGAGCAACTGGAAACTGGGAGGTCGCGTCGCGCGTCATCGACGACCTGT
CAGCCAACGACGCCATGCCCGACGTCTTCACGTACAACGCTGCGATTGCT
GCCTGCGCTGGTTCTTCGGCATCGTCGTCGACGTCTCCTTCGCCGCAGCG
GCCCGGGTCATGGCGACGGGCGGTGCAGCTGCTGGACATCATGCGGCAGC
GCGGCGTGCGCCCGGACGTCGTCTCTTACAACACGTGCATGCACGTGTGC
GGACGTGCCAAGCAGTGGCAGCGTGTCCTCCATCTTCTTGGAGACATGAA
GGTGCACGGGCCGACGCCCAACGTGTACACGTGGAATACGGCGCTTTCGG
CGCTGGCCCGCGGCGGGCAGCACGCGGCAGCGCTGGGCTTGCTGGATGAG
ATGCGTGGGGCGGGGCAGCGGCCGGATGCTGTCACCTACCGCGCGGCGGC
GGCGGCGTGCGAGCAGGGCGGCCTGTGGGAGGCGGCGCTCGAGCTGTTGG
AGCAGCACAGGGCAGAACTGGGGTCAGAGCCAGATGTCCAAATGTACACA
TCGGTGGTTAACGCGTGCCGGCGGGCACGGCAGGCGGGGCCCGCGCTGCA
GCTGCTGGATGAGATGGCTGCGAAGGGCGTCGAGGCCACAGACCGCATCT
ACAACAGGTGGGGCATTCCAGCCAGCGGCACTTATCTGGTCGGGCTAGCT
CCTATTTCCTTCTGTTTCTCCTTATTGCTGCTTCACGTCTGCAGTTATTT
AAATTCGAGATCCTTCGCTACTGCGATTTGTCCTTCAGGACGTGACTGCT
CTCGTTGCTCGGTTATCAGCGGGCTTCTTGCAAACCCCCTCGTGTTTCTC
TCATTCCTCTTCTCCTGTCGATGTACGCTTGCGCTTCCCCTTACAGCGTA
A
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