mRNA_P-wetherbeei_contig6630.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6630.2.1
Unique NamemRNA_P-wetherbeei_contig6630.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6630.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6630contigP-wetherbeei_contig6630:2438..3348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size700
Hectar predicted targeting categoryother localisation
Exons2
Cds size693
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186926.5701792-UTR-P-wetherbeei_contig6630:2437..24441683186926.5701792-UTR-P-wetherbeei_contig6630:2437..2444Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6630 2438..2444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186926.5799735-CDS-P-wetherbeei_contig6630:2444..26121683186926.5799735-CDS-P-wetherbeei_contig6630:2444..2612Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6630 2445..2612 +
1683186926.5893247-CDS-P-wetherbeei_contig6630:2823..33481683186926.5893247-CDS-P-wetherbeei_contig6630:2823..3348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6630 2824..3348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6630.2.1prot_P-wetherbeei_contig6630.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6630 2445..3348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6630.2.1

>prot_P-wetherbeei_contig6630.2.1 ID=prot_P-wetherbeei_contig6630.2.1|Name=mRNA_P-wetherbeei_contig6630.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=231bp
MEAYEEWQQPVYVTERIAYAAPTRPPSWLRDSDDSVMEDSTEKMRLSCVA
PCSSGEMPQMPELSASCCTSRRKGRRRGPRGVWERASSSDVVDLDWEAGS
PLVGNGHGRYGVLPGGGGGGGRGVSPESAQRMCAAPFFTASPDGSPGRGG
GAWRGGSSASAGFGSSFGAGGFSSGAGVGAGGGSGNTGAGKAAHGSEASD
FFGSRPGSNRWAQDVTDFKAILRAGIDVTKR
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mRNA from alignment at P-wetherbeei_contig6630:2438..3348+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6630.2.1 ID=mRNA_P-wetherbeei_contig6630.2.1|Name=mRNA_P-wetherbeei_contig6630.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=911bp|location=Sequence derived from alignment at P-wetherbeei_contig6630:2438..3348+ (Phaeothamnion wetherbeei SAG_119_79)
TGAAGTCATGGAGGCATACGAAGAGTGGCAGCAGCCCGTGTACGTCACCG
AGCGCATCGCGTACGCGGCGCCGACGCGCCCGCCGTCTTGGCTCCGCGAC
AGCGACGACTCGGTCATGGAGGACTCGACGGAGAAGATGCGCTTGAGCTG
CGTCGCCCCCTGCAGCAGCGGAGAGGTGAGCATGGCACGCCCCTGCGAAC
GAAGTGCTCCGGCGCTTATACCCAGACACCCGCGCTATAGTTAAACCTTT
CGATTGCCGACCCCACAACTGTCCATCTCCCCACAAACTAACATATTTTA
TTTCCAAAAATAACGTGAAAATGGTGGATATCCCCATTCGAACCTCCGCC
CTCCGCGCTCCGACCTCCCGTTGCCGCCCACCACAGATGCCGCAAATGCC
CGAACTCAGCGCAAGTTGTTGTACCTCGCGCCGTAAGGGCCGCCGCCGCG
GCCCGCGCGGCGTCTGGGAGCGCGCGTCCTCCTCCGACGTAGTGGACCTG
GATTGGGAGGCCGGCAGCCCGCTCGTCGGCAACGGCCACGGCCGCTACGG
CGTCCTTCCCGGCGGCGGCGGCGGCGGCGGCCGCGGCGTCAGCCCGGAGT
CGGCGCAGCGGATGTGCGCCGCCCCGTTCTTCACCGCGTCGCCCGATGGG
TCGCCAGGGAGGGGCGGCGGCGCGTGGCGGGGCGGCAGCAGCGCCAGCGC
TGGTTTTGGCTCCAGCTTTGGCGCCGGCGGCTTCAGCAGCGGCGCTGGTG
TTGGCGCGGGCGGCGGCAGTGGCAATACCGGCGCCGGGAAAGCAGCGCAC
GGCTCGGAAGCGTCGGACTTCTTCGGGTCGCGGCCTGGCTCCAATCGGTG
GGCGCAGGATGTGACCGACTTCAAGGCCATCCTTCGCGCCGGCATCGACG
TCACCAAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6630:2438..3348+

>mRNA_P-wetherbeei_contig6630.2.1 ID=mRNA_P-wetherbeei_contig6630.2.1|Name=mRNA_P-wetherbeei_contig6630.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=693bp|location=Sequence derived from alignment at P-wetherbeei_contig6630:2438..3348+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCATACGAAGAGTGGCAGCAGCCCGTGTACGTCACCGAGCGCAT
CGCGTACGCGGCGCCGACGCGCCCGCCGTCTTGGCTCCGCGACAGCGACG
ACTCGGTCATGGAGGACTCGACGGAGAAGATGCGCTTGAGCTGCGTCGCC
CCCTGCAGCAGCGGAGAGATGCCGCAAATGCCCGAACTCAGCGCAAGTTG
TTGTACCTCGCGCCGTAAGGGCCGCCGCCGCGGCCCGCGCGGCGTCTGGG
AGCGCGCGTCCTCCTCCGACGTAGTGGACCTGGATTGGGAGGCCGGCAGC
CCGCTCGTCGGCAACGGCCACGGCCGCTACGGCGTCCTTCCCGGCGGCGG
CGGCGGCGGCGGCCGCGGCGTCAGCCCGGAGTCGGCGCAGCGGATGTGCG
CCGCCCCGTTCTTCACCGCGTCGCCCGATGGGTCGCCAGGGAGGGGCGGC
GGCGCGTGGCGGGGCGGCAGCAGCGCCAGCGCTGGTTTTGGCTCCAGCTT
TGGCGCCGGCGGCTTCAGCAGCGGCGCTGGTGTTGGCGCGGGCGGCGGCA
GTGGCAATACCGGCGCCGGGAAAGCAGCGCACGGCTCGGAAGCGTCGGAC
TTCTTCGGGTCGCGGCCTGGCTCCAATCGGTGGGCGCAGGATGTGACCGA
CTTCAAGGCCATCCTTCGCGCCGGCATCGACGTCACCAAGCGG
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